haiku.rag/docs/cli.md
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# Command Line Interface
The `haiku-rag` CLI provides complete document management functionality.
!!! note
Global options (must be specified before the command):
- `--config` - Specify custom configuration file
- `--version` / `-v` - Show version and exit
Per-command options:
- `--db` - Specify custom database path
- `-h` - Show help for specific command
Example:
```bash
haiku-rag --config /path/to/config.yaml list
haiku-rag --config /path/to/config.yaml list --db /path/to/custom.db
haiku-rag add -h
```
## Document Management
### List Documents
```bash
haiku-rag list
```
Filter documents by properties:
```bash
# Filter by URI pattern
haiku-rag list --filter "uri LIKE '%arxiv%'"
# Filter by exact title
haiku-rag list --filter "title = 'My Document'"
# Combine multiple conditions
haiku-rag list --filter "uri LIKE '%.pdf' AND title LIKE '%paper%'"
```
### Add Documents
From text:
```bash
haiku-rag add "Your document content here"
# Attach metadata (repeat --meta for multiple entries)
haiku-rag add "Your document content here" --meta author=alice --meta topic=notes
```
From file or URL:
```bash
haiku-rag add-src /path/to/document.pdf
haiku-rag add-src https://example.com/article.html
# Optionally set a humanreadable title stored in the DB schema
haiku-rag add-src /mnt/data/doc1.pdf --title "Q3 Financial Report"
# Optionally attach metadata (repeat --meta). Values use JSON parsing if possible:
# numbers, booleans, null, arrays/objects; otherwise kept as strings.
haiku-rag add-src /mnt/data/doc1.pdf --meta source=manual --meta page_count=12 --meta published=true
```
From directory (recursively adds all supported files):
```bash
haiku-rag add-src /path/to/documents/
```
!!! note
When adding a directory, the same content filters configured for [file monitoring](configuration.md#filtering-monitored-files) are applied. This means `ignore_patterns` and `include_patterns` from your configuration will be used to filter which files are added.
!!! note
As you add documents to `haiku.rag` the database keeps growing. By default, LanceDB supports versioning
of your data. Create/update operations are atomicfeeling: if anything fails during chunking or embedding,
the database rolls back to the preoperation snapshot using LanceDB table versioning. You can optimize and
compact the database by running the [vacuum](#vacuum-optimize-and-cleanup) command.
### Get Document
```bash
haiku-rag get 3f4a... # document ID
```
### Delete Document
```bash
haiku-rag delete 3f4a... # document ID
haiku-rag rm 3f4a... # alias
```
Use this when you want to change things like the embedding model or chunk size for example.
## Search
Basic search:
```bash
haiku-rag search "machine learning"
```
With options:
```bash
haiku-rag search "python programming" --limit 10
```
With filters (filter by document properties):
```bash
# Filter by URI pattern
haiku-rag search "neural networks" --filter "uri LIKE '%arxiv%'"
# Filter by exact title
haiku-rag search "transformers" --filter "title = 'Deep Learning Guide'"
# Combine multiple conditions
haiku-rag search "AI" --filter "uri LIKE '%.pdf' AND title LIKE '%paper%'"
```
## Question Answering
Ask questions about your documents:
```bash
haiku-rag ask "Who is the author of haiku.rag?"
```
Ask questions with citations showing source documents:
```bash
haiku-rag ask "Who is the author of haiku.rag?" --cite
```
Use deep QA for complex questions (multi-agent decomposition):
```bash
haiku-rag ask "What are the main features and architecture of haiku.rag?" --deep --cite
```
Show verbose output with deep QA:
```bash
haiku-rag ask "What are the main features and architecture of haiku.rag?" --deep --verbose
```
The QA agent will search your documents for relevant information and provide a comprehensive answer. With `--cite`, responses include citations showing which documents were used. With `--deep`, the question is decomposed into sub-questions that are answered in parallel before synthesizing a final answer. With `--verbose` (only with `--deep`), you'll see the planning, searching, evaluation, and synthesis steps as they happen.
When available, citations use the document title; otherwise they fall back to the URI.
## Research
Run the multi-step research graph:
```bash
haiku-rag research "How does haiku.rag organize and query documents?" \
--max-iterations 2 \
--confidence-threshold 0.8 \
--max-concurrency 3 \
--verbose
```
Flags:
- `--max-iterations, -n`: maximum search/evaluate cycles (default: 3)
- `--confidence-threshold`: stop once evaluation confidence meets/exceeds this (default: 0.8)
- `--max-concurrency`: number of sub-questions searched in parallel each iteration (default: 3)
- `--verbose`: show planning, searching previews, evaluation summary, and stop reason
When `--verbose` is set the CLI also consumes the internal research stream, printing every `log` event as agents progress through planning, search, evaluation, and synthesis. If you build your own integration, call `stream_research_graph` to access the same `log`, `report`, and `error` events and render them however you like while the graph is running.
## Server
Start services (requires at least one flag):
```bash
# MCP server only (HTTP transport)
haiku-rag serve --mcp
# MCP server (stdio transport)
haiku-rag serve --mcp --stdio
# File monitoring only
haiku-rag serve --monitor
# Both services
haiku-rag serve --monitor --mcp
# Custom port
haiku-rag serve --mcp --mcp-port 9000
```
See [Server Mode](server.md) for details on available services.
## Settings
View current configuration settings:
```bash
haiku-rag settings
```
## Maintenance
### Info (Read-only)
Display database metadata without upgrading or modifying it:
```bash
haiku-rag info [--db /path/to/your.lancedb]
```
Shows:
- path to the database
- stored haiku.rag version (from settings)
- embeddings provider/model and vector dimension
- number of documents
- table versions per table (documents, chunks)
At the end, a separate “Versions” section lists runtime package versions:
- haiku.rag
- lancedb
- docling
### Vacuum (Optimize and Cleanup)
Reduce disk usage by optimizing and pruning old table versions across all tables:
```bash
haiku-rag vacuum
```
**Automatic Cleanup:** Vacuum runs automatically in the background after document operations. By default, it removes versions older than 60 seconds (configurable via `storage.vacuum_retention_seconds`), preserving recent versions for concurrent connections. Manual vacuum can be useful for cleanup after bulk operations or to free disk space immediately.
### Rebuild Database
Rebuild the database by deleting all chunks & embeddings and re-indexing all documents. This is useful
when want to switch embeddings provider or model:
```bash
haiku-rag rebuild
```
### Download Models
Download required runtime models:
```bash
haiku-rag download-models
```
This command:
- Downloads Docling OCR/conversion models (no-op if already present).
- Pulls Ollama models referenced in your configuration (embeddings, QA, research, rerank).