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1076 commits

Author SHA1 Message Date
Yiorgis Gozadinos
d2b2acef2c
Merge pull request #590 from icearia0219/codex/fix-vector-metric-consistency
Honor configured vector metric during search
2026-08-31 10:39:35 -05:00
icearia0219
b93270adce Honor configured vector metric during search 2026-08-31 21:38:00 +08:00
Yiorgis Gozadinos
22a5b7d17c
Add --full-citations to ask and analyze 2026-08-31 16:31:09 +03:00
Yiorgis Gozadinos
e0bde9d59a
Test the 0.20.0 and 0.25.0 migrations
Both were exempt from coverage, which is how the 0.38.0 blob-encoding bug
reached a release: nothing exercised the chain that produced it.

Move the historical `documents` shapes into tests/store/legacy_documents.py
so each migration's tests can seed the table as its predecessor left it.
2026-08-31 12:13:12 +03:00
Yiorgis Gozadinos
6133e5ff4a
Accept zstd docling blobs in the 0.38.0 migration
v0.25.0 compresses through compress_json, which switched from gzip to
zstd in 0.38.0 — the same release that added this migration. v0.38.0
decompressed with gzip and fell back to a raw UTF-8 decode, and both
fail on a zstd frame, so upgrading any database older than 0.25.0 has
died with UnicodeDecodeError since the migration shipped.

Reported with a fix by @omaer0 in #586.
2026-08-31 12:13:10 +03:00
Yiorgis Gozadinos
0c67db4459
Accept a /v1 suffix on the vLLM reranker base_url
vllm_base_url moves to utils.py and is shared with the embedder, so the same
endpoint works written either way. Writing /v1 posted to /v1/v1/rerank.
2026-08-28 15:46:42 +03:00
Yiorgis Gozadinos
ad100ecd4d
Reject unknown chat model providers and rename gemini to google 2026-08-28 15:46:20 +03:00
Yiorgis Gozadinos
afdef92b5b
Finish the comment pass, and escape document fields everywhere Rich renders
`_rich_print_document` escapes uri, title and metadata, the sibling of
the escaped search-result renderer. The remaining comments and
docstrings that narrated rejected alternatives, consequences or history
now state the current invariant. The Sandbox class docstring names the
held connection close() releases, and wrapped docs paragraphs join to
one line.
2026-08-28 15:34:47 +03:00
Yiorgis Gozadinos
09a7076b7e
State what the code does, not what it replaced
Comments and docstrings across the branch narrated rejected
alternatives, consequences and history; each now states the current
contract. Renames test_a_legacy_uri_client_keeps_its_error to
test_an_unnamed_database_keeps_its_error. Documents the Sandbox
connection paths, the citation header's database segment, both
AmbiguousDatabaseError conditions on create_app, and run_inspector's
scope parameter. Doc paragraphs added by the branch in python.md,
storage.md and cli.md are one physical line each.
2026-08-28 15:13:52 +03:00
Yiorgis Gozadinos
d0df382ce8
Release every sandbox resource, whichever teardown fails
Sandbox.close released the pool and the held federated client only when
the monty session's __aexit__ returned. Each release now runs under
suppress(Exception), matching _discard_session and aclose_quietly, so a
raising step neither masks an unwinding error nor leaks the databases a
federated `_opened` holds.
2026-08-28 15:13:28 +03:00
Yiorgis Gozadinos
ee835b77c2
Select a filtered document from the database that holds it
The chat filter modal keys a selection by (database, id): copies of a
database share document ids, and checking one copy left the other
reading as selected. Applying the filter narrows the question's
`sources` to the databases the selection names. A twin id inside
another selected database still matches there: a serialized id filter
cannot carry a source.
2026-08-28 15:12:55 +03:00
Yiorgis Gozadinos
b601489896
Render titles and database names as text, not markup
A database name, document title, uri or heading containing Rich markup
crashed search output, chat citations and the chat document filter with
MarkupError. Every interpolation into markup-parsed text now escapes.
2026-08-28 15:12:19 +03:00
Yiorgis Gozadinos
2bfb661c10
Pin the over-fetch rule, and assert the type a lookup raises
`_fetch_limit` had no test: a text query over-fetches `limit * 10` only with a
reranker, and an image query keeps its vector ranking either way. The sandbox
test asserted `KeyError`, which `UnknownDatabaseError` subclasses, so it could
not tell the contract from a bare one.

`uses_configured_databases` documents a mapping of one as covered; the test
named for it passed no mapping at all. Its `config` parameter is an `AppConfig`.

`test_an_analysis_capability_mounts_the_configured_set` carried a VCR marker and
no cassette, making no HTTP calls.
2026-08-28 14:03:13 +03:00
Yiorgis Gozadinos
81e05cba7a
Name what a command calls its database, and whether it exists
`tag_restore` reached into `HaikuRAGApp._display_path` and `_path`, and seven
places spelled out `self._is_local and not self._path.exists()`. `display_path`
and `database_missing` say both, and `database_missing` is False for a database
behind a URI, which has no path to check.

`init` keeps its own check: it asks the opposite question.
2026-08-28 14:02:56 +03:00
Yiorgis Gozadinos
1de1b662ae
Render database names and failures verbatim in the inspector
A database name, a location and an exception message all reach the info modal
as configuration-derived text, and Rich reads `[...]` in any of them as markup:
a name like `beta [prod]` disappeared, and a message carrying `[Errno 2]` or a
stray closing tag could break the line it sat in.
2026-08-28 14:02:50 +03:00
Yiorgis Gozadinos
7dc853606f
Name the collection a chat citation came from
Two collections can hold documents with the same title, and the collapsed
citation carried only that title, so the two read as one source repeated. The
name is appended when the client covers a set, the decision already made for
search results and retrieved images.
2026-08-28 13:30:11 +03:00
Yiorgis Gozadinos
590719fca7
Read a document, chunk or picture from the database that names it
`resolve_document` and `find_document` selected a document through a listing,
then dropped its source and looked the id up across the set. Ids repeat between
copies of a database, so a title that matched in one could be answered by
another's document.

`get_document_by_id` and `get_chunk_by_id` join `get_picture_bytes` in taking an
optional `source`, and all three route it through `clients_covering`, so a name
the client does not cover raises `UnknownDatabaseError` rather than being
answered by the database it does cover. Without a source the reads are as they
were, answering from the first database in configured order that holds the id.
2026-08-28 13:30:05 +03:00
Yiorgis Gozadinos
2325f187b5
Fix a client's coverage when it is first entered
`_resolve_scope` returned a scope without keeping it, so a client re-entered
after its configuration was edited covered whatever the configuration then said.
Resolving once is what the rest of the design rests on: the scope is what names
results, citations and errors.

A configuration is still free to change before first entry.
2026-08-28 13:29:16 +03:00
Yiorgis Gozadinos
fa319596cc
Name the collection on a retrieved image, not only in the text
Search results and capsule entries name the collection they came from; the
images attached beside them carried only the chunk id and reference. Two
collections can return the same picture of the same document, so the two
labels were identical and the model could place neither.

The decision is the one already made for the text: `covers_multiple` at the
generic search tool, and the flag `search_corpus` computed for the capability
tools, which it now returns.
2026-08-28 12:02:16 +03:00
Yiorgis Gozadinos
bfd09f6880
Leave no database reading when a federated fan-out fails
`asyncio.gather` propagates the first failure while its siblings run on, and the
caller unwinding from that closes the set through `async with` — so a sibling
still reading reads through a closed session. Seven fan-outs were affected:
lookup, search, image enrichment, multimodal picture loading, context expansion,
document listing and counting, and the sandbox's document load.

`gather_all` cancels and drains the rest, then re-raises the original exception.
A `TaskGroup` would drain them too but raise an `ExceptionGroup`, which every
caller and both CLIs' exception handlers would have to unwrap. The two
`return_exceptions=True` gathers in session opening and teardown already drain
their children and are left alone.
2026-08-28 12:02:07 +03:00
Yiorgis Gozadinos
225a37ca73
Tell one collection's pictures from another's
Three places identified a picture by document and reference alone, and one
identified a citation's images by chunk id alone. Both repeat between copies of
a database, so a search returning a figure from two collections sent one, a
capsule retained one, and a citation rendered the other collection's figures.

Keyed on the source as well: `(source, document_id, self_ref)` for search
pictures, the capability and source for retained ones, and `qualified_id` for
the chat's citation images.
2026-08-28 10:35:46 +03:00
Yiorgis Gozadinos
9dc79e7fda
Name the collection each piece of cited evidence came from
A capsule replaces earlier questions' evidence with what they cited, so the
searches that carried a `Collection:` line are gone by the time the model reads
it. Cited content survived; which collection it came from did not, and a
follow-up question attributed it to whichever the model guessed.

Named the same way a search result names it: the capsule decides, and only when
it spans more than one.
2026-08-28 10:35:38 +03:00
Yiorgis Gozadinos
dafc15978e
Translate every database-opening failure in haiku-ingester
`ConfigMismatchError` and `SourceUnavailableError` escaped the entry point as
tracebacks rather than a message and exit code 1. The entry-point test is
parametrized over the translated types, so the two CLIs' lists cannot drift
apart silently again.
2026-08-28 09:59:37 +03:00
Yiorgis Gozadinos
5e81054a1e
Apply the filter modal's search on enter, not as you type
Typing narrowed the mounted checkboxes without touching the search the listing
was built from, so a term matching more than one page hid rows from whichever
page the user happened to be on, left the rest of the matches a page away, and
paged on the previous search while the term still sat in the box. The term now
applies on enter, and the footer says so until it does.
2026-08-28 09:59:33 +03:00
Yiorgis Gozadinos
bee67e736a
Say what a federated client owns, and trim four comments
The set shares the reranker its facades borrow, not an embedder: each covered
database builds and closes its own. Sharing one needs the lender pattern inside
`Store`, since a store's embedder also serves writes and is closed with the
session, so it is left as follow-up rather than done here.

`reported_location` returned `client.location` and nothing else; its test
asserted that a mock returns what it was given. `list_documents` names its
results through `name_all`.
2026-08-28 09:15:26 +03:00
Yiorgis Gozadinos
b5aa0e7122
Serialize the sandbox's shared connection, not its owners
The lock was applied to an owner as well, so every owner-backed file read queued
behind the capability's tool calls to guard state it does not touch. An owner is
a session of its own and is yielded straight through, which is what the
docstring already claimed.
2026-08-28 08:47:37 +03:00
Yiorgis Gozadinos
bd8c1a6d15
Render a citation whose pictures no database claims
Chat asked the covering client for a picture with the citation's source, which
raises when there is none, losing the answer to one figure. It resolves the
reader first and omits the bytes when the database cannot be placed, as the rich
formatter already did.
2026-08-28 08:47:36 +03:00
Yiorgis Gozadinos
202cbd2d3f
Name the database a write wrote to
Reads tagged the document they returned and writes did not, so creating in
`alpha` came back with `source=None` while reading the same document came back
with `"alpha"`. Every outward write result goes through the owning session.
2026-08-28 08:47:36 +03:00
Yiorgis Gozadinos
cad472e999
Let a config-only command work on no database
`settings` and `download-models` read the configuration and open nothing, but
resolved a scope to be constructed, so `--db-name nope` failed them over a
selection they never use. `HaikuRAGApp` takes no scope for those, and asking it
for one is an error rather than a silent default.
2026-08-27 18:04:28 +03:00
Yiorgis Gozadinos
0dec3d4e63
Make three tests assert what they are about
`test_an_image_query_builds_no_reranker` never submitted an image query: it
opened clients and found nothing built, which is lazy construction. It sends one
now, so consulting the reranker before the query type fails it.

`TestComparingEmbedders` called `_require_one_embedder` and asserted nothing.
It rejects a disagreement and accepts an absent record, and searches through.

Three `ModelRetry` tests took any reason where the reason is the subject.
2026-08-27 18:04:28 +03:00
Yiorgis Gozadinos
95c02addd7
Name a remedy the command being used has
`haiku-ingester` reached the client's refusal, which names `sources=[name]`, a
Python argument no CLI user can pass. It refuses a configured set itself, with
`--db PATH` and the one-ingester-per-database layout.

`haiku-rag`'s own refusal now says where each option goes: `--db-name` is global
and precedes the command, `--db` follows it.
2026-08-27 18:04:28 +03:00
Yiorgis Gozadinos
5ecffdedf2
Read a created database's embedder with its settings
Creating re-read the settings blob and left `stored_embedding` at None, so a
client that created a database compared as though it recorded no embedder.
`_remember_settings` takes both, and the comment no longer says one follows the
other.
2026-08-27 18:04:27 +03:00
Yiorgis Gozadinos
b6bc54c69e
Answer for an unknown database name with one type
A name nothing covers raised `KeyError` in four places and
`AmbiguousDatabaseError` in a fifth, so a caller had to catch both and neither
name said what happened. `UnknownDatabaseError` is all of them, exported from
`haiku.rag.store` beside the other errors.

It subclasses `KeyError`, since selecting by name is a lookup, and prints its
message plainly rather than quoted as a missing key. Both CLIs turn it into the
same clean exit they already gave the others.
2026-08-27 18:04:27 +03:00
Yiorgis Gozadinos
cb9f945c79
Give every client shape a way to be released
`close()` refused a client covering a set, which left one with no method to
call: `async with` was the only lifecycle it had. `aclose()` runs that teardown
for a caller that owns the client some other way, whatever it covers, and
nothing to release is not an error, so it is safe before entering and after
closing.

`close()` stays what it is, one connection and nothing else, and says so:
draining the background vacuum and releasing the embedder and reranker are
awaitable.
2026-08-27 18:04:27 +03:00
Yiorgis Gozadinos
105b2628de
Page the filter modal, and list the selected
A selection outside the page stayed applied while its checkbox was gone, so
there was no way to remove it. Appending those documents to the page instead
loses the bound the page exists to keep, since selections accumulate across
searches.

Both listings page at `DOCUMENT_PAGE`, and `Selected` switches between them, so
the mounted widgets stay bounded whichever is showing and every selection is a
page away rather than unreachable.

The count reads the checkboxes on screen, so narrowing as the user types reports
what is visible. A listing with nothing in it says so, instead of leaving an
empty box that reads as still loading.
2026-08-27 18:04:27 +03:00
Yiorgis Gozadinos
2fef67d9fd
Name the databases before the model runs
`ask(sources=["typo"])` reached the model, which discovered the name only if it
searched: requests spent on a selection that could never answer, and a run that
never searched answered anyway.

Checked by name, not by opening: a client covering a set opens a database when a
query reaches it, and validating by opening would open every one of them before
any search, letting a database nobody asked about fail the run.
2026-08-27 17:07:41 +03:00
Yiorgis Gozadinos
8791f12c37
Build one reranker for the databases searched together
Every client covering a database built its own, so a set of five loaded the same
local model weights five times over, beside the federator's. A client covering a
database for another borrows that one's, and only its owner closes it.
2026-08-27 17:07:41 +03:00
Yiorgis Gozadinos
64b1096865
Mark a picture no database claims
`format_citations_rich` asked a client covering a set for a picture whose
citation named no database, which raises, losing the whole answer to one figure.
Citations recorded before databases could be named carry no source, so the
figure marker the caller already renders stands in.
2026-08-27 16:01:30 +03:00
Yiorgis Gozadinos
de6da8b375
Pin what reciprocal rank fusion produces
`_fuse` ran in tests without anything asserting its output, so reversing the
sort or dropping the truncation changed nothing. Databases interleave by rank,
the score is the reciprocal of it, ties keep configured order, and the limit
cuts the fused list.

Every native score in one database beats every one in the other, so ranking by
score rather than position fails all four.
2026-08-27 16:01:28 +03:00
Yiorgis Gozadinos
5f795cb0cb
Let the MCP server be told which database once
`create_mcp_server` promised one database and accepted a scope covering a set,
where the write tools exist and fail on use. It refuses that now.

Resolving is the public factory's job, as it is `HaikuRAG`'s: `_covering` takes
a scope someone already resolved, so the configured name survives without a
`DatabaseScope` reaching the public signature.

The test that a scope decides the database asserted `all(...)` over a search
that could return nothing, which held whatever the server read. It reads the
listing instead, so alpha's documents being present and beta's absent both have
to be true.
2026-08-27 15:41:03 +03:00
Yiorgis Gozadinos
acea8cbaac
Prove the lend without reaching the embedder
The test searched through the capability, which embeds the query, so it passed
against a local Ollama and failed CI where there is none. What it exists to show
is that a lent client is what the capability reads through: `_ensure_rag`
returns it, and a full-text search through it names its results.
2026-08-27 15:26:09 +03:00
Yiorgis Gozadinos
c778fbf527
Refuse a path and sources together
`sources` was ignored beside a database path, so `sources=["nope"]` opened the
path and read as though the selection had been honoured. A path and a name
already conflict inside `DatabaseScope.resolve`; this is the same rule where a
caller can reach it.
2026-08-27 15:12:22 +03:00
Yiorgis Gozadinos
db7f0e0af6
Give the MCP server the database, not a description of it
`run_mcp` derived a path and a configuration for the server, and deriving drops
the configured name: MCP results and citations carried `source=None` where the
same database named through any other path carried "alpha".

`create_mcp_server` takes the resolved scope and opens through it, so the name
survives. Passing a path and configuration still works and resolves to the same
place.
2026-08-27 15:12:13 +03:00
Yiorgis Gozadinos
d93cb5c891
Refuse a name the client does not cover, however many it covers
`reader_for` returned itself before looking at the name, so an "alpha" client
answered `reader_for("beta")` with alpha's reader. A citation naming another
database would have been read from the wrong one.

Both paths decide through `clients_covering` now, so one database refuses a
wrong name the way a set already did.

The chat citation test said mounting lends the client without showing it; a
chat test shows it and the docstring points there.
2026-08-27 14:49:40 +03:00
Yiorgis Gozadinos
45a5e68da5
Say what reader_for and an empty sources mean
`reader_for` documented None as covering any database it could not place, but a
name outside the set raises `KeyError` like `clients_for` does: provenance
naming a database this client does not cover is wrong rather than absent. None
means one thing, a federated client given no name.

`sources=[]` means two things. On a search it selects nothing to search; on the
constructor it raises, since a client over no database can do nothing. Both are
written down now.

A capability reads through a lent client, so what a citation records is that
client's database and not the scope the capability was built with. Chat lends
one, and had no test saying so.
2026-08-27 14:41:26 +03:00
Yiorgis Gozadinos
474245ab59
Serve the database the MCP command selected
`run_mcp` passed `_path`, the local stand-in a URI-backed ref resolves to for
display. A path overrides `lancedb.uri`, so `--db-name` on an S3 database
served the local default. It passes the ref's own path now, None where a URI
placed the database, and `create_mcp_server` accepts that.

The client opened around the server is gone. It never served a request, and it
opened the scope rather than the derived path, so startup validated the remote
database while the server read the local one.
2026-08-27 14:41:16 +03:00
Yiorgis Gozadinos
9ed66e3a06
Search one database the ordinary way, however it was selected
`sources=["alpha"]` on a client covering a set went through fusion, which
scores position: a result the database ranked at 0.6549 was reported as
1/(60+rank). Embedding also moved ahead of the repository, so a filter matching
no document embedded the query anyway.

A selection of one now runs the single-database search. Fusion reconciles
rankings from separate indexes, and one ranking has nothing to reconcile.

A reranker that returns chunks it built rather than the ones it was given loses
which database each came from, since ownership is by identity. That is named
now instead of surfacing as a KeyError, and stated on `RerankerBase._rerank`.
2026-08-27 14:41:10 +03:00
Yiorgis Gozadinos
87367759f9
Say what makes a cited chunk id ambiguous
The documented rule was existence in more than one selected database. The rule
is narrower and does not need to be wider: a copy the search never returned
grounded nothing, so the retrieved result is the citation and its database is
recorded rather than guessed.

The page now states the whole rule, including the fallback's own check for an
id no search returned. Two retrieved copies are refused, and so is an id
already cited from another database in the conversation. The case between them
had no test.
2026-08-27 14:09:01 +03:00
Yiorgis Gozadinos
206d29b74a
Let the configuration place the ingester's database
The ingester manufactured `data_dir / haiku.rag.lancedb` whenever `--db` was
absent and passed it to HaikuRAG. A path is now an explicit override that
clears the configured URI, so a `lancedb.uri` deployment wrote to local disk
while the control plane reported on the remote.

`IngesterApp` resolves the databases it works on once, in its constructor, and
both the client it opens and the control plane read that scope. `--db` names
one directly and nothing stands in for it, so a configured set is refused
rather than guessed, and `AmbiguousDatabaseError` joins the errors `cli()`
turns into a clean exit.
2026-08-27 14:00:21 +03:00
Yiorgis Gozadinos
b8bf846bb7
Cite a repeated chunk from its last occurrence
Collision detection replaced the lookup's dict comprehension with
`setdefault`, which also flipped a chunk found by several searches from its
last occurrence to its first. The copies differ in everything the expansion
window decides, figures included, so that silently changed what a citation
renders.

The rules are separate now: a repeated (source, chunk_id) takes the later
result, a chunk_id under two sources is still refused.
2026-08-27 13:25:06 +03:00