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11 commits

Author SHA1 Message Date
Daniel
36cb742ce7 ci: fix the failing job, split deploy out, and drop the Android build
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Three things, one subject: making CI say the truth about this repo.

## The red on every run was ours, not the runners'

Every docker-build run came back success, success, failure — the same
shape for weeks. The failing job was `deploy`, and it was failing to
*not run*:

    if: ${{ github.event.inputs.deploy == 'true' }}

On a push there is no github.event.inputs at all. This Forgejo does not
treat that as false and skip; it dispatches the job, the runner cannot
resolve it, and the task ends in "Early termination". The runners were
never at fault, and nothing about them needed changing.

The `'runs-on' key not defined` line is a red herring: the `build` job
prints it too and succeeds. It names the job's *needs* target, not the
job, and the old android-apk workflow used `needs:` happily for months.

Deploy is now its own workflow with only workflow_dispatch — no
condition to evaluate, so nothing can be dispatched by mistake. No job
in either file now carries a job-level `if`. The one conditional left is
a *step* (push to registry), and step conditions are evaluated by the
runner once the job is already running, which is why that one has always
worked.

## dev and main

docker-build now runs on `dev` as well. Both branches prove the same two
things — tests pass, image builds — and only `main` publishes the image,
so nothing on `dev` can be mistaken for something deployable. Deploying
stays a person pressing a button after looking at the change.
CONTRIBUTING.md documents the flow.

## Android

Removed: the mobile/ Capacitor project, docs/mobile-build.md, and the
Android bits of scripts/release.sh. All of it is in git history — 4613a278
is the last commit that had it — for when it is rebuilt.

src/utils/platform.js stays. isMobileClient only decides token lifetime,
it is twelve lines, and it is the contract a future app would come back
to; deleting it would be a change to auth for no gain.

.github/workflows/ went too — all five. There is no GitHub remote on
this repository, so none of them has ever run, and two of them wrote
into mobile/ paths that no longer exist.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Dv6sqaY6Vq3ChZHMem3cnU
2026-09-12 23:30:52 +02:00
Daniel
60556aae28 config: the clinical assistant answers from 12 excerpts
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It asked for 8 while the reranker capped everything at 12, so 8 is what it ever
actually received — and its answers were judged good on that. Now that the cap
defers to the caller, 12 is the number worth asking for: it is what the corpus
has been tuned against, and the reranker still decides which 12.

Verified live: the assistant returns 12 sources.

Also records PubMed as a search source of its own rather than a provider option
under web search. It returns structured records — title, journal, year, PMID,
abstract — so a reference can be exact instead of reconstructed from a page
title, and a model should be able to reach for "the literature" distinctly from
"the web".

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Dv6sqaY6Vq3ChZHMem3cnU
2026-09-11 16:13:55 +02:00
Daniel
a3dee83ac2 docs: record the sign-in code and preview behaviour still to build
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Both came out of using the app: the preview works but is all-or-nothing, and
signing in should be possible without a password without replacing it.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Dv6sqaY6Vq3ChZHMem3cnU
2026-09-11 02:42:07 +02:00
Daniel
881534234d docs: correct the DeepL claim and refresh the renamed paths
CLINICAL_ASSISTANT.md described DeepL as an admin-configurable translation
provider with its own keys and a fallback between providers. There is no
DeepL client in the code: TRANSLATE_PROVIDERS is ['libretranslate'], and an
unrecognised setting silently falls back rather than being rejected — the
first wording I wrote claimed a rejection that does not happen either.

TODO.md now names clinical-storage-milvus and
personal-assistant-storage-milvus, and records the MinIO audio-backup work
as finished.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Dv6sqaY6Vq3ChZHMem3cnU
2026-09-10 18:47:49 +02:00
Daniel
596fd897f6 docs: record the mail fixes and the collection rename
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
2026-09-10 17:42:30 +02:00
Daniel
713ed830a3 chore: script to move audio backups onto MinIO; record where things stand
Same MinIO, its own bucket, as asked. The audio-backups bucket is created;
what remains is a MinIO IAM change, which needs root credentials — my
permission layer blocked that call, so it is a script to run rather than
something I applied.

The script is additive and reversible: it attaches a second policy covering
only the new bucket and carries the existing generated-images grant over
rather than replacing it (attaching only the new one would break image
storage). It prints the AUDIO_BACKUPS_S3_* values to set, and how to undo.

A bucket policy alone does not work here: MinIO evaluates the user policy
first and it denies by default. Verified — the app key gets AccessDenied on
the new bucket until its own policy allows it.

TODO records that, and the indexer being repointed from Documents to
Personal assistant so mail is finally reached.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Dv6sqaY6Vq3ChZHMem3cnU
2026-09-10 17:00:02 +02:00
Daniel
dca1ebb6fe fix: admin routers authenticate themselves; track the audit in TODO
- adminMilestones was reached only because adminConfig is mounted on
  /api/admin ahead of it and guards the whole path. adminMiddleware checks
  req.user.role and nothing else, so it failed closed (403) rather than
  open — but on mount order, not intent. It now states the requirement,
  with a test covering all four admin routers.
- TODO.md records the whole audit: what was verified working (live
  transcription round trip, voice mode wiring), what was fixed, the two
  advisories that are unreachable and why, and the CI/CD and Kubernetes
  work worth doing before scaling out.

Security review found nothing else exploitable: parameterised SQL
throughout (the one interpolated table name is allowlisted), CORS refuses
to start open in production, JWT_SECRET refuses to start unset in
production, rate limits on /api and each auth route, a real CSP, and no
secrets in the repo.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Dv6sqaY6Vq3ChZHMem3cnU
2026-09-10 16:03:20 +02:00
Daniel
5cfd47ea66 docs: operator is built from source now
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01GmpYHPSLGmXGZMyLpn2Lbe
2026-09-10 04:31:12 +02:00
Daniel
7b07a1239d docs: storage stack is versioned; record what remains
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01GmpYHPSLGmXGZMyLpn2Lbe
2026-09-10 04:26:57 +02:00
Daniel
e1e23a99e6 docs: record the MinIO switch and the unversioned storage stack
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01GmpYHPSLGmXGZMyLpn2Lbe
2026-09-10 04:18:12 +02:00
Daniel
18cee14549 docs: track the open work in TODO.md
Records what is genuinely outstanding and the non-obvious infrastructure facts
found while fixing it, so the next session does not rediscover them.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01WjVc5oaAaYFNbZGLeJp6TX
2026-09-10 02:45:07 +02:00