The feature was removed; the docs still described it as live. Worst of
it was api-reference.md, which documented nine /api/learning endpoints
and fourteen /api/admin/learning CMS endpoints — routes that answer 404
— plus POST /api/user/webdav-path, whose column was dropped by
migration. Anyone reading them was reading fiction.
Checked against the running system rather than assumed: no learning
table exists, users.webdav_learning_path is gone, generated_image_links
is gone, and no route mounts /api/learning or /api/admin/learning.
Two things that look like Learning Hub and are not, so they stay:
- learningRetrieval.js is live — My Resources uses it. Its settings keep
the learning.* names because renaming them would orphan whatever an
administrator has already set. retrieval-tuning.md now says so instead
of listing the rows under two different feature names.
- the moderator role is still assignable. It gated the CMS and now
grants nothing; authentication.md says that rather than implying
powers it does not have. moderatorMiddleware has no callers left,
which is worth removing on its own.
auth-admin-learning.md is now auth-admin.md.
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Dv6sqaY6Vq3ChZHMem3cnU
Embeddings existed here for Learning Hub semantic search — the card said
so itself. Learning Hub was removed, and nothing took its place: the
clinical corpus is embedded by the indexing service, not by this app.
What was left was a settings page that configured a model, tested it,
reported its dimensions, and fed nothing.
src/utils/embeddings.js had exactly one importer, src/routes/adminConfig
.js, which used it for the three routes this deletes. Outside those, the
only mentions of embedding in the server were a comment and a settings
prefix.
Gone: the module, its three admin routes, the dimension probe, the
Discover & test kind and its two panels, the admin.js block behind them,
the embeddings. prefix from both the writable-settings allowlist and the
lockdown list (it can no longer be written at all, so locking it says
nothing), and docs/embeddings-setup.md, which documented Learning Hub
search end to end.
'embedding' stays in NON_CHAT_MODES — that is the filter keeping
embedding models out of the chat-model list, and the gateway still
serves them.
Docs still describe nine /api/learning endpoints that no longer exist,
left from the Learning Hub removal. Not touched here; that is its own
subject.
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Dv6sqaY6Vq3ChZHMem3cnU
My Resources generates better slides than Learning Hub ever did — a typed deck
the model fills in, rendered by python-pptx with fit-to-slide text, figures, a
vision review and themes, against Learning Hub's markdown-through-pandoc — and
the articles and quizzes now live in the quiz app. Keeping a second, weaker
generator and a whole CMS beside it was not earning its maintenance.
Removed: three routers, the Learning Hub and Content Manager tabs, their
components and frontend modules, the five database tables, the WebDAV browser,
the content embedding column and its vector index.
Content was exported first — every article as markdown plus a full SQL dump of
all five tables — to ops-backups/learning-hub-export-*. That export is the
restore path; the migration's down() can recreate the shape but never the rows,
and says so.
Two things this simplifies rather than merely deletes:
generated_image_links existed only to record which published content an image
appeared in, and it was the sole reason a generated image could be read by
someone who did not make it. Images are now owner-only — the visibility rule is
one WHERE clause instead of a join across two tables and a published flag.
embeddings.js keeps the model discovery the admin panel uses and loses
searchSimilar and generateContentEmbedding, which queried a table that no longer
exists.
Kept deliberately: Nextcloud connect, disconnect and export, which are how a
generated note reaches a real filesystem and have nothing to do with Learning
Hub; learningRetrieval, which despite its name is the clinical corpus search My
Resources depends on; and the pandoc reference deck, still the fallback when the
python renderer fails, moved from assets/learning to assets/deck now that the
old name misleads.
Tests: four Learning-Hub-only files removed, and the individual cases inside
shared files that asserted its behaviour. Where a test used a Learning endpoint
only as a convenient example — the account-boundary token test, the policy
matrix — it now uses one that still exists, so the property it proves is
unchanged.
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Dv6sqaY6Vq3ChZHMem3cnU
Three pairs of docs described the same thing twice, and the copies had drifted
apart. Merged each into one file, keeping the unique content from both:
- ARCHITECTURE.md -> architecture.md (its operational map: ownership, request
flow, runtime boundaries, source of truth, deployment shape)
- DEVELOPMENT.md -> developer-guide.md (change workflow, Clinical Assistant
high-risk areas, frontend rendering rules, deployment checks)
- transcription-options.md -> speech.md (the clinic setup table, and the list
of browser-Whisper paths that must stay removed)
Then audited what remained against the code and the live database rather than
against the previous docs. Corrected:
- Google Vertex was still documented as a provider across nine files. The SDK
is gone; AI_PROVIDER=vertex now logs an advisory and falls back to
OpenRouter, and Gemini is reached through LiteLLM. Fixed the provider
selection order to match src/utils/ai.js, which starts from LITELLM_API_BASE.
- promptSafe was documented on 8 routes; it is on 13.
- Node 20 -> 24, "24 vanilla JS modules" -> no fixed count, and
transcribe.js/tts.js -> sttProvider.js/ttsProvider.js, which is what exists.
- STT/TTS are LiteLLM-only; README listed direct Google, AWS Transcribe and
ElevenLabs paths that are not in the runtime.
- Learning Hub PPTX export was documented as pptxgenjs, which is not a
dependency. It is pandoc against a reference deck.
- POST /api/admin/milestones/seed does not exist; it is /bulk-import.
- NEXTCLOUD_URL and NTFY_TOPIC are not read anywhere. Nextcloud is per-user in
the users table, and the ntfy topic is derived as pedscribe-{userId}.
- A prose paragraph sat inside the Clinical Assistant settings table, so half
the rows rendered as text.
Filled the gaps the audit exposed:
- database.md was missing 12 of 29 tables, including user_resources,
personal_notes, login_codes, registration_invites and generated_image_jobs.
- developer-guide.md was missing 11 routers and 10 frontend modules.
- api-reference.md detailed 121 of 244 endpoints and said so, but whole
features were absent. Added an endpoint index covering Clinical Assistant,
My Resources, Notes, Diagrams, ED Encounters, invites and sign-in codes.
- configuration.md was missing METRICS_TOKEN, REDIS_URL, API_RATE_LIMIT_MAX,
the LITELLM_* model variables, the DB_* ones maintenance.js reads, and the
per-purpose S3 resolution scheme.
- clinical-assistant.md documented 2 of its 17 environment variables.
- features-explained.md had no entry for My Resources or Clinical Assistant.
Renamed the three remaining SHOUTING filenames to kebab-case, which is what the
docs viewer's prettyName() was working around, and rewrote README's index,
which listed architecture.md twice and omitted nine files.
Noted but not changed: the Turnstile site key is hardcoded in index.html rather
than read from TURNSTILE_SITE_KEY, and /api/health/detailed can report
tts: 'elevenlabs' though no ElevenLabs path exists.
Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Dv6sqaY6Vq3ChZHMem3cnU
Three concurrent themes from this session:
═══════════════════════════════════════════════════════════════════
ED ENCOUNTERS — per-stage cards + consolidate→MDM finalize
═══════════════════════════════════════════════════════════════════
UX redesign per Daniel's feedback ("every stage note should be shown,
if AI is told to modify that particular note then the modified version
is used in final mdm"):
- Each generated stage stays on screen as its own editable card with
its own embedded "Don't Miss" panel. No more single rolling note
element that gets replaced on each generation.
- gatherCurrentNotes() reads contenteditable text from each stage card
before any operation (advance, finalize, persist) so inline edits
flow into the next AI call and the final consolidate.
- Stage badge is now state-accurate. "Stage N (recording)" with yellow
background after Add-more before generation; "Stage N" with gray
after generation. Fixes the bug where the badge flipped to Stage 2
the moment Add-more was clicked.
- Save & Done now runs TWO server-side AI calls in /finalize:
1. edConsolidate (new prompt) → polished single final note that
integrates every stage chronologically (HPI / ROS / PE / ED Course /
A&P with disposition).
2. edFinalize (rewritten with full inline 2023 AMA E/M element
rubric — problems / data / risk definitions, level mapping with
concrete examples) → MDM JSON.
- Two new cards render after finalize: blue-bordered Final Consolidated
Note + green-bordered MDM. Stage cards become read-only.
- partial_data on the saved row now stores {stages, finalNote, mdm,
finalized} so resume re-renders the full state.
Why two-call finalize: a single combined prompt makes the model cut
corners on one task. Two focused calls cost ~2× latency at the very end
of an encounter — acceptable since finalize is a one-time terminal
action, not a per-stage hot path.
Files: public/components/ed-encounter.html, public/js/ed-encounters.js,
src/routes/edEncounters.js, src/utils/prompts.js (edConsolidate added,
edFinalize rewritten).
═══════════════════════════════════════════════════════════════════
EXTENSIONS / PAGERS — visual polish
═══════════════════════════════════════════════════════════════════
Multiple iterations based on Daniel's feedback:
- Layout: align-items:flex-start so action buttons stay pinned top-right
when long numbers wrap (was align-items:center → buttons drifted into
the text area, causing visible overlap).
- Number: word-break:break-all + min-width:0 + font-feature-settings:tnum
so long numbers wrap within their column instead of pushing under the
buttons. Click-to-copy with a 0.55s green flash + ✓ copied badge.
- Phone/pager Font Awesome icon next to the number in the type color —
at-a-glance type signal (replacing an earlier 3px left stripe that
Daniel found visually bulky).
- Name: font-weight 700, font-size 14.5px, color g900, letter-spacing
-0.012em — scan-target headline typography for long lists.
- Alternating subtle backgrounds by index (white vs #fafbfc) so a long
list reads as distinct rows.
- Hover: card lifts 1px with a soft shadow; action buttons fade from
55% to 100% opacity. Cubic-bezier transition on transform.
- Entrance: staggered fade-up animation per card (35ms × index, capped
at 12). prefers-reduced-motion media query disables motion.
- Empty state: 48px FA icon + heading instead of plain gray text.
Files: public/js/extensions.js, public/css/styles.css.
═══════════════════════════════════════════════════════════════════
DOCS REORGANIZATION + APPLICATION-LOGIC DOCS + ADMIN VIEWER
═══════════════════════════════════════════════════════════════════
Document moves (preserving git history via git mv):
BROWSER_WHISPER_SETUP.md → docs/browser-whisper-setup.md
BROWSER_WHISPER_TROUBLESHOOTING.md → docs/browser-whisper-troubleshooting.md
DEVELOPER_GUIDE.md → docs/developer-guide-extended.md
EMBEDDINGS_SETUP.md → docs/embeddings-setup.md
FEATURES_EXPLAINED.md → docs/features-explained.md
IMPROVEMENTS.md → docs/improvements.md
OPENID_SETUP.md → docs/openid-setup.md
TRANSCRIPTION_OPTIONS.md → docs/transcription-options.md
README.md updated with the new paths + a Documentation section that
links to docs/logic/ at the top.
New application-logic doc series (~8,300 lines total) at docs/logic/.
Built with 5 parallel doc-writing agents per Daniel's "use multiple
agents" directive. Each doc explains how a part of the app actually
works — application logic, data flow, design decisions, sacred zones,
how-to-extend recipes — at a depth that lets a new dev (or an AI
assistant) modify the code confidently.
docs/logic/README.md — index + recommended reading order
docs/logic/architecture.md (2166 L) — frontend IIFE pattern, lazy tab
load, backend route convention,
schema, encryption, deployment
docs/logic/clinical-notes.md (1546L) — every note tab + helper trio
docs/logic/bedside-and-calculators.md (1373L) — bedside ES module
pocket + calculators + PE Guide
+ suture selector
docs/logic/auth-admin-learning.md (1281L) — auth (local+OIDC+2FA) +
admin panel + Learning Hub
(Quiz engine logic at sub-detail
only — TODO follow-up)
docs/logic/ai-and-voice.md (1128 L) — callAI 5-provider routing,
prompts, voice/STT, helper trio
docs/logic/ed-encounters.md (821 L) — multi-stage ED + MDM (this
session's worked example)
Admin-only docs viewer:
- New route /api/admin/docs/{tree,file}: recursively walks docs/, returns
the tree as JSON; /file?path=X validates path stays inside docs/ and
renders markdown via marked. Both gated by req.user.role==='admin'.
- New tab "Docs" (book icon) in the sidebar, hidden by default and
revealed in auth.js when user.role==='admin' (same pattern as the
existing Admin and CMS tabs).
- New component public/components/admin-docs.html: split-pane layout
with a tree sidebar + filter input + a markdown reader pane.
- New module public/js/admin-docs.js: lazy-loads the tree on first tab
activation, renders collapsible folders, persists expanded state and
last-opened path via UIState. Server-rendered HTML so no client
markdown parser needed.
- CSS for the viewer (responsive split-pane, code-block styling, table
scrolling, etc.).
- Mounted at /api/admin/docs (NOT /api) — important: mounting a router
with router.use(authMiddleware) at /api accidentally 401s every other
/api/* path (caught and fixed during testing — /api/health was 401'ing).
Files: docs/* (moved + new), README.md, public/components/admin-docs.html
(new), public/js/admin-docs.js (new), src/routes/adminDocs.js (new),
public/index.html (tab + section + script), public/js/auth.js (admin
gate + logout cleanup), public/css/styles.css (viewer styles), server.js
(mount).
═══════════════════════════════════════════════════════════════════
KNOWN GAPS (TODO follow-ups)
═══════════════════════════════════════════════════════════════════
- Learning Hub quiz engine (MCQ / multi-select / T-F scoring + attempt
tracking + progress dashboard) is covered at the architectural level
in docs/logic/auth-admin-learning.md but not drilled into the quiz
data model and scoring flow. Worth a focused follow-up doc.
- ED finalize: if MDM step JSON parse fails, server returns 502 with
the consolidated finalNote in the error payload, but client doesn't
surface the partial result. Add a "MDM failed, retry" affordance.
- No e2e Playwright coverage for ED encounters or the new docs viewer.
