Commit graph

110 commits

Author SHA1 Message Date
Daniel
39c1663334 feat: invite-only registration
registration_enabled was a single switch: open to anyone, or closed to
everyone. This adds the setting an operator actually wants in between — open
to people you invited.

A code is single-use, expires (7 days by default, 90 maximum), and can be
revoked or deleted. It is stored hashed with only its last four characters
kept, because an invite grants account creation and a database dump should
not hand someone a working one. The code is readable exactly once, in the
response that creates it.

The claim is a single conditional UPDATE carrying every condition, so two
registrations racing the same code cannot both succeed. It happens after the
account exists, so a code is never spent on a failed registration — and if
the race is lost, the just-created account is removed rather than left behind
as a free registration. The rejection never says which of the four reasons
applied; distinguishing them would tell someone probing codes which guesses
were closer.

Codes avoid I, L, O and U so they survive being read aloud or copied off a
screen, and matching ignores case and separators.

The sign-up field appears only when the server says a code is required. The
admin card creates, lists, revokes and deletes, and carries the toggle.

Verified against the live database: create, claim, second claim refused,
unknown code refused, revoking a used code refused, delete. 684 tests pass.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01Dv6sqaY6Vq3ChZHMem3cnU
2026-09-10 23:12:07 +02:00
Daniel
adcea2a0ca fix: image models can be added and offered; solid phone top bar on iOS
Image models
- The Clinical Assistant "Image models" list waited on an old
  #assistant-image-model dropdown that no longer exists, so discovery never
  reached it and only four hard-coded fallbacks appeared — with no way to
  add any of the gateway's 50 image models.
- Image Generation search rows now have + Add / Added. Added models are
  saved as clinical_assistant.image_model_roster (validated server-side:
  up to 100 ids) and appear in the Clinical Assistant list at once; ticking
  one there offers it to users. Anything already allowed or configured
  stays listed. Unsaved ticks survive an add.
- The roster notification is guarded, so it can never fail the settings load.

Phone top bar
- The page is drawn under the status bar (viewport-fit=cover) and its
  theme colour was the removed header's blue, so on an iPhone content showed
  scrolling at the top of the screen. The row is now a real fixed element
  that extends behind the status bar (env(safe-area-inset-top), 0 in a
  normal tab), the menu button, sources pill and drawers clear it, and the
  theme colour is white.

Verified in Chromium: + Add -> saved roster -> listed unticked; tick kept;
remove works. Top bar is the only thing in the top 48px on all 22 pages;
phone menu positions unchanged.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01W4rptBNvn6RYieQw54GXNS
2026-09-10 13:46:19 +02:00
Daniel
531996de1e feat: search finds what is inside a tab, and the menu head reads toggle, mark, search
Search now reaches sub-navigation, because people look for "bili" rather than
"Calculators". It reads whatever a loaded component exposes — data-calc,
data-subtab, data-section — so it covers every tab with sub-navigation instead of
one hard-coded list, and the relevant components are warmed when the palette
opens. Opening a result survives the component still loading, and reaching one
from the assistant navigates first and opens it after.

Menu head order is now show/hide menu, then the mark, then search. In the
collapsed rail every item is the same centred 52px box, so the icons finally
share one axis — the brand was a flex row with a gap and sat off-centre from the
buttons beneath it.

Settings, FAQ and Admin are no longer listed in the menu: they already have a
place in the account card, and listing them twice only made the tab list longer.
Their sections remain, and activateTab already tolerates a tab whose section
exists without a sidebar button.

The retry loops are named functions rather than IIFEs, which the module
entrypoint rules forbid.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01GmpYHPSLGmXGZMyLpn2Lbe
2026-09-10 05:16:05 +02:00
Daniel
2d6eaccd96 fix: collapse to an icon rail, keep the menu scrollable, and brand as PedAI
Collapsing hid the sidebar entirely, and the toggle had moved into .menu-head
while the hide rule still targeted direct children of .sidebar-nav — so the head
went, taking the toggle with it, and there was no way to reopen the menu.

Collapsed is now a 52px icon rail rather than a disappearance: the mark, the
toggle, search and the account avatar stay reachable in place, so nothing has to
be floated over the content and there is always a way back. The assistant rail
collapses to the same strip.

Scrolling. The workspace list in the assistant rail had no overflow rule, so its
list of every app tab ran off the bottom and scrolling only appeared once you
left for the app. In the app sidebar the opposite: the whole sidebar scrolled, so
the account card scrolled away with the list and Settings and Log out became
something to hunt for. Both now scroll only the list, with the head and the
account card pinned.

The toggle was also being styled twice — as a head-row icon button and by its own
older rule with a different size and margin. It is now only the behavioural hook
that flips the icon.

Brand is PedAI, which is short enough to sit in the head row without squeezing
the controls; the collapsed rail shows the mark alone.

The reachability test now walks the toggle's real ancestor chain and fails if any
collapse rule hides a branch it sits on, rather than asserting one rule's text —
this class of bug has broken twice by moving the toggle deeper.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01GmpYHPSLGmXGZMyLpn2Lbe
2026-09-10 05:06:23 +02:00
Daniel
c7820c5ae6 feat: one shell for every view, no header bar, and a search palette
The header bar is gone. Settings and Log out moved into the account card, so a
whole band of chrome had nothing left to hold. The brand now heads the menu
alongside the search and collapse controls, on one row rather than three stacked
full-width ones. btn-settings and btn-logout are retained hidden as the canonical
handlers other code already calls, rather than duplicating that logic.

One shell for every view. Each tab was a plain white page while the assistant and
the workspace launcher sat on a tiled card, so opening any menu item changed the
whole face of the app. The tiled ground and the card edge now belong to
.main-content, and only the contents differ. The assistant replaces the shell
card rather than nesting a second one inside it.

Search, in both views, from the same palette: the workspace searches the app
menu, the assistant searches saved chats. Both sources are already in memory, so
this needs no new endpoint. Cmd/Ctrl+K opens it, arrows and Enter work, and the
assistant publishes its chats rather than the palette reaching into its
internals.

The collapse icon is now directional angles that rotate when collapsed, so it
always states what the click will do; fa-table-columns said nothing.

Mobile: the sidebar slides in whole, so the in-sidebar collapse control is hidden
there, the account card sticks to the foot of a scrolling menu, and the palette
is full-bleed instead of a centred dialog on a small screen.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01GmpYHPSLGmXGZMyLpn2Lbe
2026-09-10 04:56:37 +02:00
Daniel
91699e45cb feat: one menu for both views, a slim top bar, and an account card
The view now decides only what the menu LISTS. Everything structural is shared,
so switching redraws the content and nothing else:

- One width. The app sidebar is 210px; the assistant rail was 260px, so every
  switch shifted the content sideways.
- One surface. The tiled ground belongs to the shared panel rather than to one
  view's empty state, so the transcript and the workspace launcher sit on the
  same background.
- One menu ending. An account card closes both menus with Settings, FAQ, Log out
  and — for admins only — Admin. These were unlabelled icon buttons in the old
  header; log out reuses the existing flow rather than a second implementation.

The blue gradient header is now a slim white bar. Being the loudest element on
screen, it made any view without it look like a different product. Everything
measured against it follows from 66px to 52px.

The composer has room around it and centres on an empty transcript instead of
sitting at the very top, and Create image joins take home, export and attach in
the + menu — it acts on the conversation, so it belongs with them rather than as
its own button on the rail.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01GmpYHPSLGmXGZMyLpn2Lbe
2026-09-10 04:45:51 +02:00
Daniel
b55a748361 fix: remove the assistant's second top bar and give the toggle a menu icon
The assistant carried its own bar above the layout, on top of the blue app
header that both pages now share. On desktop it held a visually-hidden title, a
mobile-only drawer button and a status pill — so it was mostly dead space, and it
made the assistant taller than the app page it is supposed to match.

The bar is gone. The ready/busy indicator moved into the composer footer, next to
the work it describes, and the drawer button floats on phones rather than
occupying a strip the desktop layout does not have. The rail now sticks to the
top of the layout instead of 52px below a bar that no longer exists.

The menu toggle used fa-table-columns, a split-pane glyph that does not read as
"menu". Both copies now use fa-bars and rotate when collapsed to show which way
they will act.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01GmpYHPSLGmXGZMyLpn2Lbe
2026-09-10 04:25:10 +02:00
Daniel
dd25e0edb7 feat: one Assistant/Workspace switch and one menu toggle, shared by both screens
The app IS workspace mode, so the switch belongs in both places and the only
difference between the two screens is which pill is highlighted:

- The app sidebar's "AI Assistant" nav entry is replaced by the switch, with
  Workspace highlighted. The assistant rail carries the same control with
  Assistant highlighted. Clicking Assistant from the app navigates to
  /assistant; inside the assistant, Workspace opens the launcher in place.
- Accent corrected: I had it backwards last round and turned the assistant
  purple. The app's accent is blue (.tab-btn.active in styles.css); the
  assistant now uses it throughout, so neither screen looks like a different
  product. Citation chips keep purple so evidence stays distinct from
  interactive blue.
- One menu toggle labelled "Hide menu", shared by the app sidebar and the
  assistant rail. It replaces three separate controls: a pin button, a floating
  expand button, and the assistant's own rail toggle. The toggle stays reachable
  when the rail it collapses is hidden, or there would be no way back.
- Workspace cards list clinical work only. Settings, FAQ, Admin, Docs and
  Content Manager stay in the app sidebar under Account, where they belong.
- Model availability is discovery-only again: a hand-typed id cannot be verified
  at that point, so the manual entry field is gone.

The in-page mode state machine is removed along with the whole class of
hidden-versus-display bugs it carried.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01WjVc5oaAaYFNbZGLeJp6TX
2026-09-10 02:39:42 +02:00
Daniel
750efc4106 feat: Assistant / Workspace mode switch in the rail, the way Home and Code swap the page
The rail's Workspace section was a collapsible extra sitting under the chats.
It is now the second of two modes, selected by a segmented switch at the top of
the rail:

- Assistant keeps the chat column, the saved-chat list, New chat and Create image.
- Workspace REPLACES the chat column and the Sources panel with the app's own
  menu — a card grid in the main column and the same list in the rail — so
  nothing from the assistant is left half-visible beside it.

Both the rail list and the cards are built from the app's real .tab-btn
elements, so a tab added, renamed or hidden in index.html follows automatically.

Learning Hub moved down from second place to sit immediately before Content
Manager, with the other content tools rather than above the clinical ones.

Also removed dead CSS for .assistant-view-switch, .assistant-learning-view and
#assistant-learning-root: that markup no longer exists anywhere in the app.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01BkfrkQwA4YGrGw9LZSpeAq
2026-09-09 23:47:41 +02:00
Daniel
1267d1b7fc fix: login screen — remove Download Android app (APK) link and About Pediatric Clinical Tools block
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2026-09-09 16:37:47 +02:00
Daniel
73955dd5f9 feat: model selection in chat (composer pill + popup image model), deterministic image dispatch when the model writes text instead of calling the tool, markdown-rendered email, OWUI stacked composer, left mobile drawer, Go back in topbar, DeepL removed, image history inside the Create image popup 2026-09-09 02:55:28 +02:00
Daniel
982a089fcb fix: authHeaders must include Content-Type — Express never parsed JSON bodies, causing empty "Question is required" on every chat send. Also: Learning Hub back in the main menu, sources-only right column, image gallery as the user library with poll+preview, queued job reference handling 2026-09-09 02:13:17 +02:00
Daniel
c8a9f934be feat: AI Assistant at the top of the main menu; warn-only conversation budget
All checks were successful
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Forgejo Android APK / Build signed APK (push) Successful in 2m3s
2026-09-09 01:25:46 +02:00
Daniel
68385c42f1 fix: iPhone keyboard handling — resizes-content viewport, in-flow pill composer on 100dvh, 16px input to stop auto-zoom 2026-09-08 23:30:35 +02:00
Daniel
8b072496e2 feat: Open WebUI-style assistant workspace — 3-column layout, markdown/math/code/tables, autosave with images, translation (LibreTranslate+DeepL), citation modal, Learning Hub moved in, handoff removed 2026-09-08 18:52:35 +02:00
Daniel
cfaf8e957b feat: ship reviewed prompt history, conversation limits and account protections 2026-09-07 04:01:01 +02:00
Daniel
3fb4c10f2b Point the APK download link at Forgejo
All checks were successful
Forgejo Android APK / Build signed APK (push) Successful in 2m48s
The login page linked to
github.com/ifedan-ed/pediatric-ai-scribe-v3/releases/latest, which returns
404 — releases are published to git.danvics.com by the Forgejo APK
workflow. Verified: the Forgejo URL returns 200, the GitHub one 404.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
2026-07-31 01:17:29 +02:00
Daniel
82ed46d01b Fix Turnstile in the mobile app; drop it from login
The Turnstile challenge failed reliably inside the Capacitor WebView,
which blocked login and registration from the Android app.

Three separate causes:

1. Android WebView blocks third-party cookies by default. Turnstile runs
   in a cross-origin iframe from challenges.cloudflare.com and needs its
   own storage, so the widget never emitted a token. MainActivity now
   calls setAcceptThirdPartyCookies on the app's own WebView.

2. The register handler read the Turnstile response with an unscoped
   document.querySelector, which matched the *login* widget's input (it
   comes first in the DOM). Registration therefore submitted the login
   widget's token — single-use with a 5 minute expiry, so any prior login
   attempt or slow signup made it fail server-side.

3. The register and forgot-password widgets auto-rendered inside forms
   that start at display:none, where Turnstile does not reliably complete
   a challenge, and nothing re-rendered them when the form was shown.

Widgets are now rendered explicitly when their form first becomes
visible, and tokens are captured from the render callback instead of
being read back out of the injected input — which makes the unscoped
lookup in (2) structurally impossible. Added error/expired/timeout
callbacks so a widget failure surfaces the Cloudflare error code instead
of failing silently behind a generic toast.

Login is no longer gated at all. It is the path mobile users hit
constantly, and it is already covered by a 10-per-15-min per-IP rate
limit, a constant-time credential check, and TOTP 2FA. Registration and
password reset — the endpoints that actually attract bots — stay gated.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
2026-07-30 17:22:03 +02:00
Daniel
2fec33dc4d convert learning hub to module 2026-05-08 09:01:34 +02:00
Daniel
9167532a14 use indexed assistant prompt examples 2026-05-08 08:44:34 +02:00
Daniel
db2ecca45d remove top bar model selector 2026-05-08 08:28:54 +02:00
Daniel
04e736eb2e convert speech helpers to modules 2026-05-08 08:09:38 +02:00
Daniel
9ca5365daf convert auth helpers to modules 2026-05-08 07:56:41 +02:00
Daniel
bc0b43151d convert settings helpers to modules 2026-05-08 07:54:08 +02:00
Daniel
b6ebca0e6f convert admin docs and drug loader to modules 2026-05-08 07:50:26 +02:00
Daniel
03ee07f92f clarify template-only AI memory context 2026-05-08 07:38:27 +02:00
Daniel
20fc6798a9 remove browser whisper transcription 2026-05-08 07:33:12 +02:00
Daniel
59fa229b59 convert settings loaders to modules 2026-05-08 07:17:29 +02:00
Daniel
38667608b1 convert encounter note entrypoints to modules 2026-05-08 07:15:11 +02:00
Daniel
02f348ddb3 convert clinical note entrypoints to modules 2026-05-08 07:13:08 +02:00
Daniel
c458c4b4ff convert chart review entrypoint to module 2026-05-08 06:49:46 +02:00
Daniel
e05720083a test clinical note entrypoints 2026-05-08 06:33:34 +02:00
Daniel
90938f8ec1 fix diagram delete confirmation 2026-05-08 06:28:12 +02:00
Daniel
0102c9cbc6 convert admin entrypoint to module 2026-05-08 06:19:51 +02:00
Daniel
34f198edc0 extract well visit schedule data 2026-05-08 05:11:29 +02:00
Daniel
e4ea553bee extract calculator shared modules 2026-05-08 02:58:58 +02:00
Daniel
1ed1a37161 convert notes scripts to modules 2026-05-08 01:37:41 +02:00
Daniel
116bd941e1 extract notes api client 2026-05-08 01:31:06 +02:00
Daniel
c8436d5e4c refactor clinical assistant prompt handling 2026-05-07 22:52:46 +02:00
Daniel
21fb631fb5 feat: improve clinical assistant export and citations 2026-05-07 17:15:26 +02:00
Daniel
e4a95ad72e refactor: move assistant examples to module 2026-05-06 23:39:41 +02:00
Daniel
6c25e8ff05 fix: polish clinical assistant citations 2026-05-06 23:04:40 +02:00
Daniel
2310c43aea fix: improve clinical assistant rendering 2026-05-06 08:03:28 +02:00
Daniel
96c4565b9c feat: add clinical assistant MCP search
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2026-05-06 07:31:32 +02:00
Daniel
0710c4de8e rebrand to Pediatric Clinical Tools, add diagrams tab, simplify litellm transcribe/tts 2026-05-02 18:23:06 +02:00
Daniel
b82db99ebc feat(mobile): biometric sign-in (Face ID / Touch ID / fingerprint)
Adds opt-in biometric login to the Capacitor app. Replaces the password
step on subsequent sign-ins; the 2FA step (if any) still applies — by
design, defense in depth.

How it works:
- After a successful password sign-in on a Capacitor build, prompt the
  user to enroll. If they accept, capacitor-native-biometric.setCredentials
  stores the (email, password) pair in the iOS Keychain / Android Keystore
  with biometric-protected access. The local flag ped_bio_enabled=1 is
  set so the next launch knows to probe.
- On the login form, if isNativeApp() + bioStored() + bioAvailable.ok,
  reveal the "Sign in with Face ID / Touch ID / fingerprint" button at
  the top. Label is set from the actual biometryType returned by the
  plugin so users see what their device supports.
- Tap → verifyIdentity (OS prompt) → getCredentials → fill the email +
  password fields → fire the existing form submit so all the regular
  flow runs (turnstile, 2FA prompt, error handling, session storage).
- Explicit logout deletes credentials AND clears the local flag,
  hiding the button on the next visit. Auto-logout (token expiry,
  network) does NOT come through that path, so biometric persists
  across silent session resets.

Storage choice — password not JWT:
- JWTs expire and the storage would constantly need refresh.
- Storing the password lets the standard /api/auth/login flow run,
  which already handles password-rotation (a stale stored password
  just fails 401 → user falls back to typing the new one → re-enrolls).
- The password sits in OS-level secure storage, accessible only after
  successful biometric verification — same security posture as a
  password manager autofill.

Files:
- mobile/package.json: add capacitor-native-biometric@^5.0.0 (Capacitor 6
  compat)
- mobile/android/app/src/main/AndroidManifest.xml: add USE_BIOMETRIC
  uses-permission
- mobile/ios/App/App/Info.plist: add NSFaceIDUsageDescription string
- public/js/auth.js: bioPlugin/bioAvailable/bioStored/bioEnroll/
  bioRetrieve/bioForget helpers; window.PedBio surface; reveal-on-load;
  click handler; post-login enrollment prompt; logout cleanup
- public/index.html: hidden #btn-bio-login + #bio-divider above the
  email field on the login form
- public/css/styles.css: themed gradient button + hover lift
- mobile/README.md: feature list updated

Build steps for Daniel:
  cd mobile && npm install        # picks up capacitor-native-biometric
  npx cap sync                    # ports the plugin into android/ + ios/
  # then build APK / IPA as usual
2026-04-28 03:09:38 +02:00
Daniel
b53aa34248 feat: ED multi-stage UX, extensions polish, docs viewer + application-logic docs
Three concurrent themes from this session:

═══════════════════════════════════════════════════════════════════
ED ENCOUNTERS — per-stage cards + consolidate→MDM finalize
═══════════════════════════════════════════════════════════════════

UX redesign per Daniel's feedback ("every stage note should be shown,
if AI is told to modify that particular note then the modified version
is used in final mdm"):

- Each generated stage stays on screen as its own editable card with
  its own embedded "Don't Miss" panel. No more single rolling note
  element that gets replaced on each generation.
- gatherCurrentNotes() reads contenteditable text from each stage card
  before any operation (advance, finalize, persist) so inline edits
  flow into the next AI call and the final consolidate.
- Stage badge is now state-accurate. "Stage N (recording)" with yellow
  background after Add-more before generation; "Stage N" with gray
  after generation. Fixes the bug where the badge flipped to Stage 2
  the moment Add-more was clicked.
- Save & Done now runs TWO server-side AI calls in /finalize:
  1. edConsolidate (new prompt) → polished single final note that
     integrates every stage chronologically (HPI / ROS / PE / ED Course /
     A&P with disposition).
  2. edFinalize (rewritten with full inline 2023 AMA E/M element
     rubric — problems / data / risk definitions, level mapping with
     concrete examples) → MDM JSON.
- Two new cards render after finalize: blue-bordered Final Consolidated
  Note + green-bordered MDM. Stage cards become read-only.
- partial_data on the saved row now stores {stages, finalNote, mdm,
  finalized} so resume re-renders the full state.

Why two-call finalize: a single combined prompt makes the model cut
corners on one task. Two focused calls cost ~2× latency at the very end
of an encounter — acceptable since finalize is a one-time terminal
action, not a per-stage hot path.

Files: public/components/ed-encounter.html, public/js/ed-encounters.js,
src/routes/edEncounters.js, src/utils/prompts.js (edConsolidate added,
edFinalize rewritten).

═══════════════════════════════════════════════════════════════════
EXTENSIONS / PAGERS — visual polish
═══════════════════════════════════════════════════════════════════

Multiple iterations based on Daniel's feedback:

- Layout: align-items:flex-start so action buttons stay pinned top-right
  when long numbers wrap (was align-items:center → buttons drifted into
  the text area, causing visible overlap).
- Number: word-break:break-all + min-width:0 + font-feature-settings:tnum
  so long numbers wrap within their column instead of pushing under the
  buttons. Click-to-copy with a 0.55s green flash + ✓ copied badge.
- Phone/pager Font Awesome icon next to the number in the type color —
  at-a-glance type signal (replacing an earlier 3px left stripe that
  Daniel found visually bulky).
- Name: font-weight 700, font-size 14.5px, color g900, letter-spacing
  -0.012em — scan-target headline typography for long lists.
- Alternating subtle backgrounds by index (white vs #fafbfc) so a long
  list reads as distinct rows.
- Hover: card lifts 1px with a soft shadow; action buttons fade from
  55% to 100% opacity. Cubic-bezier transition on transform.
- Entrance: staggered fade-up animation per card (35ms × index, capped
  at 12). prefers-reduced-motion media query disables motion.
- Empty state: 48px FA icon + heading instead of plain gray text.

Files: public/js/extensions.js, public/css/styles.css.

═══════════════════════════════════════════════════════════════════
DOCS REORGANIZATION + APPLICATION-LOGIC DOCS + ADMIN VIEWER
═══════════════════════════════════════════════════════════════════

Document moves (preserving git history via git mv):
  BROWSER_WHISPER_SETUP.md          → docs/browser-whisper-setup.md
  BROWSER_WHISPER_TROUBLESHOOTING.md → docs/browser-whisper-troubleshooting.md
  DEVELOPER_GUIDE.md                → docs/developer-guide-extended.md
  EMBEDDINGS_SETUP.md               → docs/embeddings-setup.md
  FEATURES_EXPLAINED.md             → docs/features-explained.md
  IMPROVEMENTS.md                   → docs/improvements.md
  OPENID_SETUP.md                   → docs/openid-setup.md
  TRANSCRIPTION_OPTIONS.md          → docs/transcription-options.md
README.md updated with the new paths + a Documentation section that
links to docs/logic/ at the top.

New application-logic doc series (~8,300 lines total) at docs/logic/.
Built with 5 parallel doc-writing agents per Daniel's "use multiple
agents" directive. Each doc explains how a part of the app actually
works — application logic, data flow, design decisions, sacred zones,
how-to-extend recipes — at a depth that lets a new dev (or an AI
assistant) modify the code confidently.

  docs/logic/README.md                — index + recommended reading order
  docs/logic/architecture.md (2166 L) — frontend IIFE pattern, lazy tab
                                         load, backend route convention,
                                         schema, encryption, deployment
  docs/logic/clinical-notes.md (1546L) — every note tab + helper trio
  docs/logic/bedside-and-calculators.md (1373L) — bedside ES module
                                         pocket + calculators + PE Guide
                                         + suture selector
  docs/logic/auth-admin-learning.md (1281L) — auth (local+OIDC+2FA) +
                                         admin panel + Learning Hub
                                         (Quiz engine logic at sub-detail
                                         only — TODO follow-up)
  docs/logic/ai-and-voice.md (1128 L) — callAI 5-provider routing,
                                         prompts, voice/STT, helper trio
  docs/logic/ed-encounters.md (821 L) — multi-stage ED + MDM (this
                                         session's worked example)

Admin-only docs viewer:
- New route /api/admin/docs/{tree,file}: recursively walks docs/, returns
  the tree as JSON; /file?path=X validates path stays inside docs/ and
  renders markdown via marked. Both gated by req.user.role==='admin'.
- New tab "Docs" (book icon) in the sidebar, hidden by default and
  revealed in auth.js when user.role==='admin' (same pattern as the
  existing Admin and CMS tabs).
- New component public/components/admin-docs.html: split-pane layout
  with a tree sidebar + filter input + a markdown reader pane.
- New module public/js/admin-docs.js: lazy-loads the tree on first tab
  activation, renders collapsible folders, persists expanded state and
  last-opened path via UIState. Server-rendered HTML so no client
  markdown parser needed.
- CSS for the viewer (responsive split-pane, code-block styling, table
  scrolling, etc.).
- Mounted at /api/admin/docs (NOT /api) — important: mounting a router
  with router.use(authMiddleware) at /api accidentally 401s every other
  /api/* path (caught and fixed during testing — /api/health was 401'ing).

Files: docs/* (moved + new), README.md, public/components/admin-docs.html
(new), public/js/admin-docs.js (new), src/routes/adminDocs.js (new),
public/index.html (tab + section + script), public/js/auth.js (admin
gate + logout cleanup), public/css/styles.css (viewer styles), server.js
(mount).

═══════════════════════════════════════════════════════════════════
KNOWN GAPS (TODO follow-ups)
═══════════════════════════════════════════════════════════════════

- Learning Hub quiz engine (MCQ / multi-select / T-F scoring + attempt
  tracking + progress dashboard) is covered at the architectural level
  in docs/logic/auth-admin-learning.md but not drilled into the quiz
  data model and scoring flow. Worth a focused follow-up doc.
- ED finalize: if MDM step JSON parse fails, server returns 502 with
  the consolidated finalNote in the error payload, but client doesn't
  surface the partial result. Add a "MDM failed, retry" affordance.
- No e2e Playwright coverage for ED encounters or the new docs viewer.
2026-04-28 03:09:38 +02:00
Daniel
67b7667e04 feat: ED encounters + notes model selector; remove AI corrections; fix notes framing
Four changes batched:

1. ED Encounters tab (new) — multi-stage emergency note with don't-miss
   tooltips and 2023 E/M MDM finalize. New route /api/ed-encounters
   (generate per-stage + finalize MDM), new ed-encounters.js owning all
   client logic, new ed-encounter.html component, new template_ed memory
   category. Persists draft to localStorage every keystroke and to
   saved_encounters on stage advance. encounters.js touched only to
   register the new tab in sessionStorage restore + tabMap (save and
   idempotency code untouched).

2. Notes model selector — /notes/from-voice now accepts a client-supplied
   model (validated by the existing callAI allow-list); falls back to the
   admin default. Added <select class="tab-model-select"> to notes.html
   so the existing app.js populator handles options + default.

3. Remove AI-learning-from-corrections — deleted correctionTracker.js,
   POST /memories/correction, the corrections branch in
   /memories/context, the settings UI section, the FAQ entry, and all
   dead trackAIOutput/saveCorrection guards in callers. Legacy
   correction_* DB rows are filtered (NOT LIKE) rather than dropped, so
   no destructive migration.

4. Fix notes AI framing — /notes/from-voice prompt no longer assumes
   "physician dictation". Plain notes (shopping lists, reminders,
   ideas) now match the dictation tone instead of being forced into
   clinical structure.

All 46 tests pass.
2026-04-28 03:09:38 +02:00
Daniel
3c0de624fc feat(notes): personal notes with rich-text editor + voice dictation
New "Notes" tab under Clinical Tools — a per-user scratchpad that's
explicitly NOT fed into AI prompts (distinct from user_memories).
Two-pane layout: searchable list on the left, rich-text editor with
title + save/edit/delete on the right.

Backend:
  migrations/…_add-personal-notes.js  — personal_notes table
    (id, user_id → users ON DELETE CASCADE, title, body, created_at,
    updated_at) with indexes on user_id + (user_id, updated_at).
  src/routes/notes.js — CRUD + one AI endpoint:
    GET    /api/notes           list, newest-updated first
    GET    /api/notes/:id       fetch one
    POST   /api/notes           create (title + body required)
    PUT    /api/notes/:id       update
    DELETE /api/notes/:id       remove
    POST   /api/notes/from-voice  transcript → { title, body }
                                   via callAI (admin-controlled
                                   provider — never selectable by
                                   the clinician).
    Body + title encrypted at rest via the same cryptoUtil used for
    user_memories; 500-note per-user cap; 200-char title / 50 KB
    body limits.

Frontend:
  public/components/notes.html — empty-state card ("Hello 👋"),
    sidebar list with search, editor head with voice-bar (Dictate /
    Pause / Resume / Stop + live timer + pulse indicator), Tiptap
    body, metadata footer. Uses existing .tp-* toolbar classes.
  public/js/notes.js — lazy-init on first tab activation; Tiptap
    editor built from window.Tiptap (same bundle the Content
    Manager uses); delegated list clicks; Ctrl/Cmd+S to save;
    uses app.js's AudioRecorder + transcribeAudio so the STT
    pipeline is shared. On stop → transcribe → /api/notes/from-
    voice → drop the AI-structured title + body into the editor;
    clinician reviews then saves.
  public/css/styles.css — 70 lines of .notes-* styles (card
    layout, warm empty-state with gradient icon + tips, pulse
    animation for the recording indicator, focus states, hover
    nudges).
  public/sw.js — bump cache from pedscribe-v12 → pedscribe-v12-
    notes1 so clients pick up the new module/component.

Admin-controlled STT provider: the recorder posts its audio blob
to the existing /api/transcribe (Google / LiteLLM / ElevenLabs /
Browser Whisper — whatever admin wired up in Settings). Users
cannot pick the provider from this UI.
2026-04-24 06:18:41 +02:00
Daniel
d71714b65d test(lint): static reference linter — catches dead-code + orphan refs
You were right that Playwright has been catching the easy bugs while
the high-signal bugs (lightbox stranded after the Bedside reorg, PVC
clinically wrong, prod not rebuilt) all had to be caught by you as
the user. Adding a static linter so the class of bug that produced
the lightbox regression fails CI next time instead of the app.

scripts/lint-references.js walks public/js and validates every
getElementById('X') and querySelector('#X') resolves to an id that
is defined SOMEWHERE in the repo — either a static HTML attribute,
a .id = 'X' assignment, or an id="X" substring inside a JS template
string. It also walks HTML for asset references (data-img-src,
<img src>, <audio src>, <link href>) and verifies each root-absolute
path maps to a real file on disk.

Running it on the current tree surfaced two real problems:

1. shadess.js:917 reached for #wv-note-transcript when collecting
   refine source context. The actual id is #wv-transcript (no -note-
   infix — the transcript element is shared across well-visit sub-
   panels). The bug meant a generated well-visit note's Refine call
   silently missed the original transcript as source context; the AI
   still "worked" but with less signal and no error. Fixed.

2. public/js/adminMilestones.js (221 lines) referenced 17 ids that
   were removed a year+ ago in commit 3173ce6 ("Remove milestone
   admin UI, add CMS content refresh button"). That commit dropped
   the HTML but forgot the JS, which has been dead-loaded on every
   page view since. All its addEventListener calls are guarded with
   optional chaining, so nothing errored — just silent cruft.
   Deleted the file and dropped the <script defer> tag from
   index.html.

scripts/e2e.sh runs the linter as a preflight before the Playwright
container starts; a broken reference now fails the suite before any
test even boots.

Allowlist is kept small and prefix-based for the handful of id families
that are built dynamically by JS (bedside em-* sections, BP chart
elements, etc.). When a new component is added, its ids get picked up
automatically by the repo-wide collect() pass; the allowlist rarely
needs to grow.

Suite: 294 passed / 0 failed.
2026-04-23 18:58:38 +02:00