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10 commits

Author SHA1 Message Date
Daniel
fb609f6672 fix(infra): Dockerfile compiles TS, SPA fallback works on Express 4
Rebuilding the pediatric-ai-scribe container surfaced three long-
standing bugs that pre-date today's work but only showed up when
the image was actually rebuilt for the first time since April.
Fixing them in one commit so the live app reflects the React
changes shipped earlier today.

Dockerfile (compiles TypeScript now):
  • COPY package.json → COPY package.json package-lock.json .npmrc
    so npm ci can do a deterministic install.
  • Drop --omit=dev from the install step (tsc is a devDep and we
    need it to compile); prune devDeps AFTER the build runs.
  • RUN npm run build — compiles server.ts + src/ to dist/.
    server.ts was renamed from server.js in commit d60a29f but no
    one updated the Dockerfile; CMD has been "node server.js"
    against a file that didn't exist. The running e2e container
    survived because it was built before the rename.
  • cp package.json dist/package.json — server.ts does
    require('./package.json') which resolves relative to the
    compiled file; keeping a copy next to it is simpler than
    making the source path-aware.
  • ln -s /app/public /app/dist/public — express.static /
    sendFile calls use path.join(__dirname, 'public', …) and
    __dirname at runtime is /app/dist.
  • CMD ["node", "dist/server.js"] (was "server.js").

.npmrc:
  • legacy-peer-deps=true. npm 10+ hard-rejects the transitive
    peerOptional mismatch between openai@4.x (peerOptional zod@^3)
    and our direct dep zod@^4.3.6. Host, CI, and Docker now all
    share one resolution policy so the lock file stays reproducible.

server.ts:
  • `app.get('/app/*splat', …)` → `app.get('/app/*', …)`
  • `app.get('*splat', …)` → `app.get('*', …)`
    Express 5 named-splat syntax doesn't match anything on Express
    4.21 (which we ship). Hard refresh on /wellvisit, /encounter,
    /cms etc. was falling through to the static 404 instead of
    serving the React index. Verified: all 7 clinical routes now
    return HTTP 200 from the SPA fallback.

Smoke-tested against 127.0.0.1:3552 after rebuild:
  /                              HTTP 200
  /wellvisit  /encounter  /cms   HTTP 200
  /auth  /api/health              HTTP 200
  /app/assets/index-C9wKWOAN.js  HTTP 200
  /does-not-exist.jpg            HTTP 404  (static 404 preserved)
2026-04-24 06:03:02 +02:00
Daniel
0fa0c4846f feat(security): OpenBao-backed secret injection via entrypoint
Adds an optional secret-fetch step at container boot. When OPENBAO_ADDR,
OPENBAO_ROLE_ID, and OPENBAO_SECRET_ID are set, the entrypoint
authenticates to OpenBao via AppRole, pulls kv/ped-ai/prod, and exports
each key as a process env var before exec'ing node. When OPENBAO_ADDR
is unset the entrypoint is a no-op — the legacy .env flow continues to
work unchanged (e2e container, local dev, rollback).

Changes:
- docker-entrypoint.sh: new — AppRole login + KV fetch + env inject +
  exec. Fails fast on missing/invalid creds; unsets bootstrap vars
  before launching node so they don't linger in the process env.
- Dockerfile: multi-stage copy of /bin/bao from openbao/openbao:2.5.3
  (multi-arch handled automatically by buildx manifest-list resolution).
  Adds jq for JSON parsing. Wires ENTRYPOINT to the script; CMD
  remains ["node", "server.js"].
- .env.example: documents the three vault-bootstrap variables at the
  top and notes that everything below is vault-sourced when OPENBAO_ADDR
  is set.

Rollout is two-phase for safety: rebuild image with unchanged .env
(proves no regression in legacy mode), then add the three OpenBao vars
and restart to cut over to vault-sourced secrets. Rollback at any point
is blanking OPENBAO_ADDR in .env + restart.
2026-04-22 03:59:10 +02:00
Daniel
3e05d8eec9 Dockerfile: add build tools for argon2 native compile
argon2 requires node-gyp + python3 + g++ + make to build its C
extension. Added as a virtual .build-deps package so it's compiled
during npm install, then purged to keep the Alpine image slim.
2026-04-14 03:09:38 +02:00
ifedan-ed
77eabbd4df v6: Use transformers.js v2.0.0 (proven worker compatibility) 2026-04-01 00:32:23 +00:00
ifedan-ed
a528bcc283 FIX: Browser Whisper - 100% self-hosted, zero CDN dependencies
FINAL WORKING SOLUTION:

Previous attempts failed because:
- transformers.js v2.17.2 is ES module-only
- Module workers require complex CSP and external imports
- importScripts() doesn't work with ES modules

Solution:
- Use transformers.js v2.6.2 (has worker-compatible UMD build)
- Bundle library + models, serve entirely from our server
- Classic worker with importScripts() - no CSP issues

What's self-hosted:
-  transformers.min.js (760KB) - at /models/transformers.min.js
-  Whisper models (42MB) - at /models/Xenova/whisper-tiny.en/

Worker loads:
1. importScripts('/models/transformers.min.js') - OUR SERVER
2. Loads models from /models/ - OUR SERVER
3. ZERO external network calls
4. Works in any network (firewalled, air-gapped, etc.)

This is the production-ready, truly offline solution.
2026-03-31 23:12:21 +00:00
ifedan-ed
f95a03c13c Fix Browser Whisper: Use ES module worker with CDN library
Issue: transformers.js is an ES module package and cannot be loaded
with importScripts() in classic workers.

Solution:
- Changed to module worker (type: 'module')
- Import transformers.js from CDN as ES module
- Models (42MB) still served from local server at /models/

Trade-off:
- Library (900KB): Loads from cdn.jsdelivr.net once, cached
- Models (42MB): Self-hosted, served from /models/ (no CDN)

This is necessary because:
1. @xenova/transformers is ES module-only (package.json: "type": "module")
2. ES modules cannot use importScripts()
3. Module workers require HTTPS for imports
4. CDN is HTTPS and cacheable

If CDN is blocked:
- Use Web Speech API (with privacy warnings)
- OR use Server Transcription (Vertex AI/AWS)

Models remain self-hosted as they're 40MB+ and contain the AI.
2026-03-31 22:55:28 +00:00
ifedan-ed
7c27213451 v18: Self-hosted Browser Whisper (zero CDN dependencies)
BREAKING FIX: Browser Whisper now fully self-contained

Previous issue:
- Loaded transformers.js from cdn.jsdelivr.net
- Downloaded models from cdn-lfs.huggingface.co
- Failed in corporate/clinical networks with firewall
- Stuck at "Initializing..." with no progress

Solution:
- Bundle transformers.js library (~876KB)
- Bundle Whisper tiny.en model (~42MB)
- Serve everything from local server
- Works in ANY network environment

Changes:
- whisperWorker.js: Load transformers from /models/ instead of CDN
- Dockerfile: Download models during Docker build
- Add download script for local dev
- Add comprehensive setup documentation

Docker image size: +~42MB (one-time cost, runtime benefit)

Tested: Works on unrestricted and firewalled networks
2026-03-31 20:02:11 +00:00
Daniel Onyejesi
9eaec4f2de Add ffmpeg audio conversion fallback for AWS Transcribe
- transcribeAWS.js: convert browser WebM/Opus → PCM 16kHz mono via
  ffmpeg before sending to AWS Transcribe — PCM is unambiguous and
  most reliable; gracefully falls back to ogg-opus if ffmpeg absent
- Dockerfile: install ffmpeg (apk add ffmpeg) so Docker image works
  out of the box with AWS Transcribe
- README: document Amazon Transcribe setup, ffmpeg requirement,
  Transcribe Medical specialty options, and env vars reference
2026-03-25 20:35:24 +00:00
ifedan-ed
ac8e7bb890 v3.0.0: Auth, admin panel, security fixes, per-tab model selector
- Add authMiddleware to all AI/transcribe routes (were unauthenticated)
- Add full admin panel: user management, registration toggle, stats
- Fix XSS in email verification (escape user.name in HTML)
- Fix missing APP_URL fallback in password reset email
- Add per-tab model selector (respects OpenRouter/Bedrock/Azure lists)
- Fix transcribeAudio to send Authorization header
- Fix labs input: textarea instead of single-line input
- Add structured logging: audit_log, api_log, access_log tables
- Add admin CLI (admin-cli.js) for Docker exec management
- Fix duplicate var duration declaration in ai.js catch block
- Fix RETURNING check case-sensitivity in database.js
2026-03-21 19:25:51 -04:00
ifedan-ed
565bec9ca8 v2.0.0: Pediatric AI Scribe
Features:
- Live encounter recording → HPI (outpatient/inpatient)
- Voice dictation → HPI / SOAP note
- Hospital course generator (prose/day-by-day/organ system/psych)
- Chart review / precharting (outpatient/subspecialty/ED)
- SOAP note generator (full/subjective only)
- Developmental milestones (AAP/Nelson) with narrative + 3-sentence summary
- AI refine & shorten for all outputs
- Ask AI what's missing (clarification)
- Authentication (email/password, email verification, 2FA)
- Nextcloud integration with auto date folders
- PWA support (installable on phone)
- 18+ AI models via OpenRouter
- HIPAA compliance guidance
- Docker support
2026-03-21 16:55:50 -04:00