If no palette reduction occurred (or palette reductions were off), a
fully transparent palette entry may not have been zeroed to black. By
ensuring this gets cleaned in the `indexed_to_channels` transformation,
we may able to achieve a grayscale conversion that would otherwise have
been RGB.
This is the final piece of the puzzle in #649 to achieve better file
sizes on the first run and avoid further changes on a second run.
Results from the images in #649 (combining this PR and #673):
9.1.3 1st run: 2,191,773
9.1.3 2nd run: 2,191,629
PR 1st run: 2,191,380
PR 2nd run: 2,191,380
174f36ad8f