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Yiorgis Gozadinos 8e93b639bc
Migrate existing databases to the full index set
Adds the 0.75.0 upgrade, which brings a pre-existing database up to the index
set `_init_tables` now creates. It rewrites no table data, so unlike the earlier
data migrations its cost is the index builds alone, each of which reads the
column it indexes.

`ensure_indexes` ensures an index of the declared *type* covers each declared
column, rather than checking that the column is indexed at all. The distinction
is what makes it safe to run against a database of unknown provenance:

- A wrong-typed index no longer satisfies the check. A BTree on `label` covers
  the column while losing the low-cardinality equality lookup the Bitmap is for.
- Nothing is dropped or converted away from. Two index types over one column can
  be deliberate, serving different query shapes, so an index this function did
  not declare survives even on a column it does. The one thing it overwrites is
  an index at LanceDB's default name, `{column}_idx`, which is the name it
  creates itself.
- A column already carrying the declared type is skipped, so a database with the
  full set migrates instantly rather than re-sorting every indexed column.
- Undeclared columns are untouched, so a vector index on `chunks` survives.

It returns the columns it acted on, because a change is not always visible from
outside: adding a Bitmap beside an existing BTree leaves the column indexed
before and after.

The version bump to 0.75.0 is required, not incidental: `_set_initial_version`
stamps a new database with the installed package version, so a migration
numbered above it would be pending the moment the database was created.

`test_client_update_document_replaces_rows_with_bounded_versions` turns
auto_vacuum off. Indexing `documents` means a background vacuum now has an index
to maintain on that table, so `optimize()` writes a version where it previously
had nothing to do, and it landed inside the window the test measures. The
document update itself is still one version, so the bound stays exact.
2026-08-17 16:34:58 +03:00
.claude/skills Open the eval database read-only outside population 2026-07-28 11:36:27 +03:00
.github Pin setup-uv to v9.0.0 2026-07-27 13:38:02 +03:00
app Migrate existing databases to the full index set 2026-08-17 16:34:58 +03:00
docker Remove the mxbai reranking provider 2026-07-14 11:09:55 +03:00
docs Migrate existing databases to the full index set 2026-08-17 16:34:58 +03:00
evaluations Migrate existing databases to the full index set 2026-08-17 16:34:58 +03:00
examples Register the optional capabilities where agents are composed 2026-08-13 15:04:05 +03:00
haiku_rag_slim Migrate existing databases to the full index set 2026-08-17 16:34:58 +03:00
overrides Landing page hero with TUI screen recording 2026-05-20 16:56:25 +03:00
scripts add SeaweedFS integration tests for S3Watcher 2026-05-11 11:28:40 +03:00
tests Migrate existing databases to the full index set 2026-08-17 16:34:58 +03:00
.dockerignore Update docker build 2025-11-04 18:43:41 +02:00
.gitignore Add Logfire debugging skills and worker-breaker event 2026-07-10 13:23:17 +03:00
.pre-commit-config.yaml Fix precommit to use uv installed ruff 2026-03-12 12:05:25 +02:00
.python-version Use 3.13 for development 2025-10-09 10:18:10 +03:00
CHANGELOG.md Migrate existing databases to the full index set 2026-08-17 16:34:58 +03:00
LICENSE MIT license 2025-06-18 10:17:27 +02:00
pyproject.toml Migrate existing databases to the full index set 2026-08-17 16:34:58 +03:00
README.md Register the optional capabilities where agents are composed 2026-08-13 15:04:05 +03:00
server.json Update mcp registry schema 2025-12-19 12:39:39 +02:00
uv.lock Migrate existing databases to the full index set 2026-08-17 16:34:58 +03:00
zensical.toml Update caps documentation 2026-08-13 14:08:14 +03:00

Haiku RAG

Tests codecov

Agentic RAG built on LanceDB, Pydantic AI, and Docling.

New: vision and multimodal search. Picture-aware ingestion captures embedded figure bytes; vision-capable QA models receive them alongside text. Multimodal embedders put picture vectors in the same space as text, enabling text-as-query → figure hits and image-as-query retrieval.

Features

  • Hybrid search — Vector + full-text with Reciprocal Rank Fusion
  • Multimodal & cross-modal search — Multimodal embedders (vLLM, VoyageAI, Cohere) put picture vectors in the same space as text; supports text-as-query → figure hits and image-as-query
  • Question answering — RAG capability with citations (page numbers, section headings)
  • Vision QA — Vision-capable models receive figure bytes alongside chunk text; attach your own images to questions in ask, analyze, MCP, and the chat TUI
  • Reranking — local cross-encoders, Cohere, Zero Entropy, or vLLM
  • Analysis capability — Complex analytical tasks via sandboxed Python code execution (aggregation, computation, multi-document analysis)
  • Evidence compaction — Optional capability that replaces earlier questions' search results on the request with the evidence they cited, so long conversations stop resending everything they retrieved
  • Citation policy — Optional capability that requires every answer to declare what grounds it, including declaring that nothing does
  • Conversational RAG — Chat TUI and web application for multi-turn conversations with session memory
  • Document structure — Stores full DoclingDocument, enabling structure-aware context expansion
  • Multiple providers — Embeddings: Ollama, OpenAI, VoyageAI, Cohere, LM Studio, vLLM (multimodal via multimodal: true on vLLM/VoyageAI/Cohere). QA: any model supported by Pydantic AI
  • Local-first — Embedded LanceDB, no servers required. Also supports S3, GCS, Azure, and LanceDB Cloud
  • CLI & Python API — Full functionality from command line or code
  • MCP server — Expose as tools for AI assistants (Claude Desktop, etc.)
  • Visual grounding — View chunks highlighted on original page images
  • Production ingester — Long-lived haiku-ingester service with persistent SQLite queue, async worker pool with retries and a dead-letter queue, FS / HTTP / S3 / WebDAV source adapters, FastAPI control plane, and a browser dashboard for operators. See docs/ingester.md.
  • Tags — Name database states with haiku-rag tag and roll back to them
  • Inspector — TUI for browsing documents, chunks, and search results

Installation

Python 3.12 or newer required

pip install haiku.rag

Includes all features: document processing, all embedding providers, and rerankers.

Using uv? uv pip install haiku.rag

Slim Package (Minimal Dependencies)

pip install haiku.rag-slim

Install only the extras you need. See the Installation documentation for available options.

Quick Start

Note

: Requires an embedding provider (Ollama, OpenAI, etc.). See the Tutorial for setup instructions.

# Index a PDF
haiku-rag add-src paper.pdf

# Search
haiku-rag search "attention mechanism"

# Ask questions with citations
haiku-rag ask "What datasets were used for evaluation?"

# Ask about an image (vision-capable model)
haiku-rag ask "Does this figure match the spec in the design doc?" --image figure.png

# Analyze — complex analytical tasks via code execution
haiku-rag analyze "How many documents mention transformers?"

# Interactive chat — multi-turn conversations with memory
haiku-rag chat

# Continuously ingest from configured sources (FS, HTTP, S3, WebDAV)
haiku-ingester serve

See Configuration for customization options.

Python API

from haiku.rag.client import HaikuRAG

async with HaikuRAG("knowledge.lancedb", create=True) as rag:
    # Index documents
    await rag.create_document_from_source("paper.pdf")
    await rag.create_document_from_source("https://arxiv.org/pdf/1706.03762")

    # Search — returns chunks with provenance
    results = await rag.search("self-attention")
    for result in results:
        print(f"{result.score:.2f} | p.{result.page_numbers} | {result.content[:100]}")

    # QA with citations
    answer, citations = await rag.ask("What is the complexity of self-attention?")
    print(answer)
    for cite in citations:
        print(f"  [{cite.chunk_id}] p.{cite.page_numbers}: {cite.content[:80]}")

For direct agent composition, see the capabilities documentation.

MCP Server

Use with AI assistants like Claude Desktop:

haiku-rag mcp --stdio

Add to your Claude Desktop configuration:

{
  "mcpServers": {
    "haiku-rag": {
      "command": "haiku-rag",
      "args": ["mcp", "--stdio"]
    }
  }
}

Provides tools for document management, search, QA, and analysis directly in your AI assistant.

Examples

See the examples directory for working examples:

  • Docker Setup - Complete Docker deployment with continuous ingestion (haiku-ingester) and MCP server
  • Web Application - Full-stack conversational RAG with CopilotKit frontend

Documentation

Full documentation at: https://ggozad.github.io/haiku.rag/

License

This project is licensed under the MIT License.

mcp-name: io.github.ggozad/haiku-rag