import json import logging from collections.abc import AsyncGenerator from datetime import datetime from typing import TYPE_CHECKING from haiku.rag.client.documents import check_source_accessible from haiku.rag.converters import get_converter from haiku.rag.store.models.chunk import Chunk from haiku.rag.store.models.document import Document from haiku.rag.store.models.document_item import extract_items from haiku.rag.store.repositories.settings import SettingsRepository if TYPE_CHECKING: from haiku.rag.client import HaikuRAG, RebuildMode logger = logging.getLogger(__name__) _REBUILD_BATCH_SIZE = 50 async def rebuild_database( client: "HaikuRAG", mode: "RebuildMode | None" = None ) -> AsyncGenerator[str, None]: """Rebuild the database with the specified mode. Yields the ID of each document as it is processed. """ from haiku.rag.client import RebuildMode if mode is None: mode = RebuildMode.FULL # Wait for any already-scheduled background vacuum before the destructive # table operations at the top of RECHUNK / FULL. Rebuild drops and # recreates tables (and creates indices); a concurrent optimize on the # same table fails with "CreateIndex transaction was preempted" from # lance. Note: FULL calls create_document_from_source inside its loop, # which may schedule *new* background vacuums — those run after the # destructive phase and are fine. await client._await_vacuum_tasks() # Update settings to current config settings_repo = SettingsRepository(client.store) await settings_repo.save_current_settings() documents = await client.list_documents(include_content=True) if mode == RebuildMode.TITLE_ONLY: async for doc_id in _rebuild_title_only(client, documents): yield doc_id elif mode == RebuildMode.EMBED_ONLY: async for doc_id in _rebuild_embed_only(client, documents): yield doc_id elif mode == RebuildMode.RECHUNK: await client.chunk_repository.delete_all() await client.store.recreate_embeddings_table() async for doc_id in _rebuild_rechunk(client, documents): yield doc_id else: # FULL await client.chunk_repository.delete_all() await client.store.recreate_embeddings_table() async for doc_id in _rebuild_full(client, documents): yield doc_id # Final maintenance if auto_vacuum enabled. Swallowing only so that a # failed post-rebuild optimize doesn't mask a successful rebuild — but # log it so the failure is visible in the output. if client._config.storage.auto_vacuum: try: await client.store.vacuum() except Exception: logger.warning("Post-rebuild vacuum failed", exc_info=True) async def _rebuild_title_only( client: "HaikuRAG", documents: list[Document] ) -> AsyncGenerator[str, None]: """Generate titles for documents that don't have one.""" for doc in documents: if doc.title is not None: continue assert doc.id is not None try: title = await client.generate_title(doc) except Exception: logger.warning( "Failed to generate title for document %s", doc.id, exc_info=True ) continue if title is not None: doc.title = title await client.document_repository.update(doc) yield doc.id async def _rebuild_embed_only( client: "HaikuRAG", documents: list[Document] ) -> AsyncGenerator[str, None]: """Re-embed all chunks without changing chunk boundaries.""" from haiku.rag.embeddings import contextualize # Collect all chunks with new embeddings all_chunk_data: list[tuple[str, dict]] = [] for doc in documents: assert doc.id is not None chunks = await client.chunk_repository.get_by_document_id(doc.id) if not chunks: continue texts = contextualize(chunks) embeddings = await client.chunk_repository.embedder.embed_documents(texts) for chunk, content_fts, embedding in zip(chunks, texts, embeddings): all_chunk_data.append( ( doc.id, { "id": chunk.id, "document_id": chunk.document_id, "content": chunk.content, "content_fts": content_fts, "metadata": json.dumps(chunk.metadata), "order": chunk.order, "vector": embedding, }, ) ) # Recreate chunks table (handles dimension changes) await client.store.recreate_embeddings_table() # Insert all chunks if all_chunk_data: records = [client.store.ChunkRecord(**data) for _, data in all_chunk_data] await client.store.chunks_table.add(records) # Yield all processed doc IDs yielded_docs: set[str] = set() for doc_id, _ in all_chunk_data: if doc_id not in yielded_docs: yielded_docs.add(doc_id) yield doc_id # Yield docs with no chunks for doc in documents: if doc.id and doc.id not in yielded_docs: yield doc.id async def _flush_rebuild_batch( client: "HaikuRAG", documents: list[Document], chunks: list[Chunk] ) -> None: """Batch write documents and chunks during rebuild. Performs two writes: one for all document updates (via merge_insert), one for all chunks. Also repopulates document items from the stored docling document. Used by RECHUNK and FULL modes after the chunks table has been cleared. """ from haiku.rag.store.engine import DocumentRecord if not documents: return now = datetime.now().isoformat() # Batch update documents using merge_insert (single LanceDB version) doc_records = [] for doc in documents: assert doc.id is not None doc_records.append( DocumentRecord( id=doc.id, content=doc.content, uri=doc.uri, title=doc.title, metadata=json.dumps(doc.metadata), docling_document=doc.docling_document, docling_pages=doc.docling_pages, docling_version=doc.docling_version, created_at=doc.created_at.isoformat() if doc.created_at else now, updated_at=now, ) ) await ( client.store.documents_table.merge_insert("id") .when_matched_update_all() .execute(doc_records) ) # Batch create all chunks (single LanceDB version) if chunks: await client.chunk_repository.create(chunks) # Repopulate document items from stored docling data. The stored docling # blob has had its picture URIs stripped (compress_docling_split), so # re-extracting from it would lose picture_data; snapshot the existing # bytes per document and merge them back during extraction. for doc in documents: assert doc.id is not None docling_doc = doc.get_docling_document() if docling_doc is not None: existing_picture_data = ( await client.document_item_repository.get_all_picture_data(doc.id) ) await client.document_item_repository.delete_by_document_id(doc.id) items = extract_items( doc.id, docling_doc, existing_picture_data=existing_picture_data, ) await client.document_item_repository.create_items(doc.id, items) async def _rebuild_rechunk( client: "HaikuRAG", documents: list[Document] ) -> AsyncGenerator[str, None]: """Re-chunk and re-embed from existing document content.""" from haiku.rag.embeddings import embed_chunks pending_chunks: list[Chunk] = [] pending_docs: list[Document] = [] pending_doc_ids: list[str] = [] converter = get_converter(client._config) for doc in documents: assert doc.id is not None # Convert stored markdown to DoclingDocument docling_document = await converter.convert_text(doc.content, format="md") # Chunk and embed chunks = await client.chunk(docling_document) embedded_chunks = await embed_chunks(chunks, client._config) # Update document fields doc.set_docling(docling_document) # Prepare chunks with document_id and order for order, chunk in enumerate(embedded_chunks): chunk.document_id = doc.id chunk.order = order pending_chunks.extend(embedded_chunks) pending_docs.append(doc) pending_doc_ids.append(doc.id) # Flush batch when size reached if len(pending_docs) >= _REBUILD_BATCH_SIZE: await _flush_rebuild_batch(client, pending_docs, pending_chunks) for doc_id in pending_doc_ids: yield doc_id pending_chunks = [] pending_docs = [] pending_doc_ids = [] # Flush remaining if pending_docs: await _flush_rebuild_batch(client, pending_docs, pending_chunks) for doc_id in pending_doc_ids: yield doc_id async def _rebuild_full( client: "HaikuRAG", documents: list[Document] ) -> AsyncGenerator[str, None]: """Full rebuild: re-convert from source, re-chunk, re-embed.""" from haiku.rag.embeddings import embed_chunks pending_chunks: list[Chunk] = [] pending_docs: list[Document] = [] pending_doc_ids: list[str] = [] converter = get_converter(client._config) for doc in documents: assert doc.id is not None # Try to rebuild from source if available if doc.uri and check_source_accessible(doc.uri): try: # Flush pending batch before source rebuild (creates new doc) if pending_docs: await _flush_rebuild_batch(client, pending_docs, pending_chunks) for doc_id in pending_doc_ids: yield doc_id pending_chunks = [] pending_docs = [] pending_doc_ids = [] await client.delete_document(doc.id) new_doc = await client.create_document_from_source( source=doc.uri, metadata=doc.metadata or {} ) assert isinstance(new_doc, Document) assert new_doc.id is not None yield new_doc.id continue except Exception as e: logger.error( "Error recreating document from source %s: %s", doc.uri, e, ) continue # Fallback: rebuild from stored content if doc.uri: logger.warning("Source missing for %s, re-embedding from content", doc.uri) docling_document = await converter.convert_text(doc.content, format="md") chunks = await client.chunk(docling_document) embedded_chunks = await embed_chunks(chunks, client._config) doc.set_docling(docling_document) # Prepare chunks with document_id and order for order, chunk in enumerate(embedded_chunks): chunk.document_id = doc.id chunk.order = order pending_chunks.extend(embedded_chunks) pending_docs.append(doc) pending_doc_ids.append(doc.id) # Flush batch when size reached if len(pending_docs) >= _REBUILD_BATCH_SIZE: await _flush_rebuild_batch(client, pending_docs, pending_chunks) for doc_id in pending_doc_ids: yield doc_id pending_chunks = [] pending_docs = [] pending_doc_ids = [] # Flush remaining if pending_docs: await _flush_rebuild_batch(client, pending_docs, pending_chunks) for doc_id in pending_doc_ids: yield doc_id