Commit graph

697 commits

Author SHA1 Message Date
Yiorgis Gozadinos
eb9995e9b7
Ship a Claude Code plugin with the haiku-rag skill
claude-plugin/ holds the plugin manifest, the server configuration
(haiku-rag mcp --stdio, the configuration decides the database) and a
skill that says when to reach for the knowledge base and how to move
from a search result to a document, a section, an answer or a
computation. A repo-root marketplace manifest makes
`claude plugin marketplace add ggozad/haiku.rag` work. The skill
pre-approves every tool the server registers, and a test keeps the two
in step.

The manifest carries the package version, which bump_version.py now
rewrites: a versioned plugin updates only on a bump, so the installed
skill stays in step with the haiku-rag release the user has.

Refs #599
2026-09-04 13:00:15 +03:00
Yiorgis Gozadinos
f45ed90b33
Add --no-agents to leave the model-backed MCP tools out
haiku-rag mcp --no-agents reaches create_mcp_server(agents=False):
ask_question and analyze are not registered and the instructions drop
the line describing them. qa.model always has a default, so a server
without a usable model cannot be detected from configuration; the flag
is how an operator says so.

Refs #599
2026-09-04 13:00:15 +03:00
Yiorgis Gozadinos
5653e876a8
Return search results as agent text, images and structured content
search_documents and search_documents_by_image return a ToolResult: the
format_for_agent rendering with rank, Document ID and Collection so the
text alone drives the document tools; one ImageContent per distinct
picture, labelled with its result; and the SearchResult list without
image_data as structured content. format_for_agent gains an opt-in
include_document_id, so the capabilities' rendering is unchanged.
collect_pictures is the one place pictures are deduplicated and
validated for both wire formats.

Refs #599
2026-09-04 13:00:15 +03:00
Yiorgis Gozadinos
15afb97a6e
Navigate documents by outline and section from the MCP server
build_toc moves from the sandbox into haiku.rag.context; the sandbox
keeps its toc.json unchanged. get_document_outline returns the heading
tree with page numbers and get_document_section one section's text,
subsections included, both resolved in the database holding the
document. Chunk ids never leave the server. ask_question drops `cite`
and always appends its citations.

Refs #599
2026-09-04 13:00:15 +03:00
Yiorgis Gozadinos
2a6d72171d
Make MCP failures errors on the wire
FastMCP masks unexpected exceptions and logs the traceback server-side,
so paths and provider URLs never cross the transport. Expected failures
raise ToolError with a message: unknown document, unknown collection,
invalid filter, invalid base64, and agent failures naming only the
exception type. No tool returns an empty value or an error string on
failure any more.

A filter is validated on its own before the read that would use it, with
a filtered count on one of the selected databases: that is the query
engine rejecting the filter and nothing else, so its message (columns and
the statement) can be forwarded, while a ValueError raised later in the
read stays masked and no database outside the selection is opened.

Refs #599
2026-09-04 13:00:15 +03:00
Yiorgis Gozadinos
88cd2b1d6c
Describe the MCP server and its tools to clients
FastMCP gets instructions, the haiku.rag-slim version and a lifespan.
Every tool carries read-only ToolAnnotations with a title, a description
that says when to use it, and a description on every parameter. The
filter description lists the document columns from DocumentMetaRecord
and how to match metadata; filter is accepted by both search tools.
One strict base64 decoder serves every image parameter.
DocumentInfo carries metadata.

Refs #599
2026-09-04 13:00:15 +03:00
Yiorgis Gozadinos
40d40bcbf2
Cover the configured database set from the MCP server
`haiku-rag mcp` passes covers_set=True and _covering no longer refuses a
scope over several databases. search_documents, search_documents_by_image,
ask_question and analyze take `sources`; get_document takes `source`;
DocumentInfo carries `source`. format_citations gains include_source, which
ask_question sets from covers_multiple so citations name their database
only when the server covers several.

Refs #599
2026-09-04 13:00:14 +03:00
Yiorgis Gozadinos
ce69a8c989
Remove the MCP write tools; the server opens read-only
add_document_from_file, add_document_from_url, add_document_from_text
and delete_document are gone. create_mcp_server and _covering lose
read_only; the client always opens with read_only=True, so the
--read-only flag before `mcp` is redundant and the docs, Dockerfiles and
compose example drop it.

Ingestion is `haiku-rag add`/`add-src`/`delete` and haiku-ingester. No
known consumer used the write tools; one stdio server per client window
made multi-writer the accidental default, and streamable HTTP has no auth.

The test_app stub drops a comment and __init__ that described run_mcp
constructing the client positionally; every path goes through _covering.

Refs #599
2026-09-04 12:59:48 +03:00
Yiorgis Gozadinos
7f7223e0ac
Default to ollama:qwen3.8
Replaces gpt-oss on ModelConfig, qa.model and processing.title_model, and
ministral-3 on the picture-description model. qa.model.vision follows the
model and is now true.

enable_thinking was gated on the gpt-oss name, so it did nothing for
qwen3.8. With title_model's max_tokens of 100 the reasoning consumed the
whole budget and title generation returned an empty string. The mapping
now applies to any ollama model via reasoning_effort(): false sends
"none", true sends "high". Measured on qwen3.8:27b-mlx, "low" does not
disable thinking and "none" does; gpt-oss is the inverse, its template
has no "none" level, so it keeps "low".

Picture description bypasses get_model -- docling posts the request
itself from a params dict -- so the flag was inert on that path too.
vlm_api_params() carries reasoning_effort into both converters' request
bodies. At max_tokens 200 the description survived either way, but the
switch cut completion tokens from 141 to 45.

test_search_tool_skips_binary_content_when_qa_model_is_text_only asserted
the vision default rather than setting it; it now configures vision=False
itself.

docs/benchmarks.md keeps ministral-3: those are recorded measurements.
2026-09-04 12:36:36 +03:00
Yiorgis Gozadinos
660c86f991
vb 2026-09-03 18:00:43 +03:00
Yiorgis Gozadinos
4bf4699ee0
Note that offsetless stored timestamps are read as host-local time 2026-09-03 17:48:18 +03:00
Lawrence Akka
880551deba
Use astimezone, add timezone tests, linting 2026-09-03 17:48:09 +03:00
Yiorgis Gozadinos
5bf4cb50aa
vb 2026-09-03 15:43:56 +03:00
Yiorgis Gozadinos
187946a7ae
Name the remedy for a missing configured database and list the databases an unknown name could have meant
A configured or default database that does not exist raises
SourceUnavailableError with the way to create it and without its location.
An unknown --db-name lists the databases there are, configured or default.
The CHANGELOG records Store.db_path, SingleDatabaseSession(ref, config),
the empty lancedb.uri migration and the error-type change.
2026-09-03 15:26:42 +03:00
Yiorgis Gozadinos
3814b2bc78
Report a stemless --db path as a usage error and separate the two lancedb.uri migrations
An empty lancedb.uri, which init-config used to emit, is told to remove the
key; only a non-empty value is told the databases spelling. haiku-rag --db
and haiku-ingester --db turn a path with no stem into typer.BadParameter.
2026-09-03 15:12:09 +03:00
Yiorgis Gozadinos
a04a16c717
Remove the environment overrides and the last unnamed-database wording
HAIKU_RAG_DB and DB_PATH are gone: a capability covers what the
configuration places or the db_path it is given, and the app backend and
the AG-UI example load their configuration as the CLI does. The compose
files point HAIKU_RAG_CONFIG_PATH at the mounted haiku.rag.yaml, which
places the database at /data where DB_VOLUME is mounted; the backend
refuses a configured set since it serves one database. The chat scopes a
selection by source only over a set and names databases on filter rows
only across several. Docstrings, docs and test fixtures stop describing an
unnamed database; every database a search, listing or citation reports
carries a name.
2026-09-03 15:12:09 +03:00
Yiorgis Gozadinos
34180a0fd1
One reference and one placement for a database
DatabaseRef is a name and a location. The configuration places databases
through lancedb.databases alone; with none configured the default is the
entry haiku.rag under storage.data_dir, selectable like any other.
lancedb.uri is removed, and a config carrying it fails to load with the
replacement spelled out. A path passed from Python is valid where the
configuration places nothing and raises AmbiguousDatabaseError beside
lancedb.databases; haiku-rag --db and haiku-ingester --db construct the
scope directly, so a human's override keeps working. Every database
answers to a name, and a database given as a path keeps its own errors.
2026-09-03 15:12:08 +03:00
Yiorgis Gozadinos
9baa213b34
Hand storage the database location, not the configuration that placed it
Store, connect_lancedb, gather_database_info and run_doctor take a
location, a path or a URI, and classify it with ConnectionMode.of.
SingleDatabaseSession owns the resolved DatabaseRef and passes its
location down. This removes DatabaseRef.connection(), default_db_path,
the placeholder path for URI-backed databases and the per-database
config copies, so the configuration a client holds is the one the caller
gave it. The chat hands its capabilities the scope it opened along with
the client it lends, and the v0.58.0 migration no longer checks local
free disk for a database behind a URI.
2026-09-03 15:11:37 +03:00
Yiorgis Gozadinos
d9f489dcc8
Deduplicate search results within one model response
Sibling searches emitted in one response overlap heavily (40.6% of
returned chunk slots on Glimmer ORB fan-out cases). A result whose
rendered evidence a sibling already showed keeps its rank slot but
collapses to a reference line, and a picture attaches once per response
keyed on (source, document_id, self_ref). Equivalence is the
format_for_agent rendering at neutral rank/total plus picture keys,
bucketed under the qualified chunk id, so another database's copy or a
different expansion of the same anchor formats in full.

Search state now commits only after formatting and image construction
succeed: a raising image build no longer leaves results citable that
the model never saw, notes evidence for them, or suppresses a later
sibling.
2026-09-02 12:29:12 +03:00
Yiorgis Gozadinos
ddac328d05
Price qa.max_searches in search units
Searches a model emits in one response share a budget unit, up to
FREE_SIBLINGS_PER_ROUND (3) per unit; sequential searches pay one unit
each, as before. Grouping keys on RunContext.run_step, which pydantic-ai
increments once per model request. A budget-rejected round fails all its
remaining siblings, and tracking resets per run.

Glimmer opens most questions with a burst of ~3 rephrasings in a single
response (95.8% of its three-search ORB cases are one-response bursts),
spending 3 of 5 searches before reading anything. Pass rate at 3 calls
equals 1 call, so a burst is priced as one probe.
2026-09-02 12:29:12 +03:00
Yiorgis Gozadinos
f63dec5f75
vb 2026-09-01 16:07:03 +03:00
Yiorgis Gozadinos
2d8b2cb9ed
Expose search.vector_nprobes
The IVF probe count was the one vector search parameter with no
setting, and it is what bounds recall on a large indexed corpus:
partitions grow with the corpus, so a fixed probe count covers less of
it, and vector_refine_factor can only re-score what the probes
returned. Defaults to 20, matching lance, so search is unchanged.

Also corrects the create-index docs, which predate the measurement:
optimize() covers new chunks, so a rebuild is about retraining
centroids rather than reaching unindexed rows.
2026-09-01 15:54:36 +03:00
Yiorgis Gozadinos
7be71ebbac
Order cross-database fusion by cosine similarity to the query
Retrieval scores are each database's own rank arithmetic; the databases
in a selection share an embedder, so similarity in that one space is the
signal comparable across databases by construction. Measured product to
product against score ordering: +8.3 to +16.6pp recall@5 across five
cells on two corpora, flat in collection count and corpus shape where
score ordering dips with both, closing roughly 60% of the gap to a
reranker; order-sensitivity residual 0.00pp in every cell. Exact ties
collapse from 51-81% of candidates to under 1%. Full-text-only searches
keep retrieval-score order, having no query vector. The vector column
already travels with every search result, so the similarity costs no
additional transfer; per-chunk embeddings are materialized only for the
federated path that reads them.
2026-09-01 15:26:42 +03:00
Yiorgis Gozadinos
82fe91bb76
Order cross-database fusion by retrieval score
Rank interleaving guarantees every database slots regardless of content;
on domain-split collections it allocates no better than chance and costs
4.7pp recall@5 at four collections against score ordering (7.1pp at
eight). Hybrid scores are each database's own vector/FTS rank agreement,
which carries across databases; equal scores resolve by within-database
rank, and only a tie on both falls to configured order, leaving
permutation sensitivity at 0.02-0.26pp. Fused results carry the
candidate's own retrieval score, so the context-expansion re-sort
preserves fused order.
2026-09-01 15:26:41 +03:00
Yiorgis Gozadinos
d06277408b
Break cross-database RRF rank ties by retrieval score
Disjoint corpora give every database's rank-r candidate the same RRF
score, and the stable sort resolved those ties to lancedb.databases
declaration order, discarding the retrieval scores entirely. Ties now
break on the raw retrieval score, which is uncalibrated across indexes
but only ever orders candidates within one rank tier: the databases in
a fusion share an embedder and ran the same search type, and it can
never lift a candidate above another rank. Hybrid per-database scores
are themselves rank-derived, so exact agreement still ties and keeps
configured order, deterministically. The n > limit depth quota is
unchanged, pending the retrieval eval.
2026-09-01 15:26:41 +03:00
Yiorgis Gozadinos
c0cf612d68
Document vector index state and measured cost
Benchmarks state that every published number is exact brute-force kNN;
no benchmark database carries a vector index. The Vector Indexing
section gains the measured with/without IVF_PQ comparison (hotpotqa,
orb_multimodal_nemotron, frames: free to ~121k chunks, 0.0044 MAP at
426k, ~30 s / 4 GB build) and corrects the re-indexing story: optimize()
folds new chunks into the index as delta parts via auto_vacuum, so a
rebuild is about retraining centroids, not covering new rows.
2026-09-01 15:19:13 +03:00
Yiorgis Gozadinos
a7efd76016
vb 2026-08-31 20:04:16 +03:00
Yiorgis Gozadinos
e49f4264d3
Update lancedb to 0.37.1
The newest release with wheels for every supported platform: 0.38.0
publishes none for x86_64 Linux or Windows. The zero-coverage FTS scan
path is still broken at 0.37.1, so the guard, prevention and repair
carry unchanged. ensure_indexes names the index it declares, keeping
replace deterministic on 0.38+, where an unnamed create_index builds a
suffixed sibling instead of replacing a different-typed index. An
invalid search filter raises ValueError.
2026-08-31 18:54:48 +03:00
Yiorgis Gozadinos
02bccb1b90
Repair an FTS index that covers no rows on write
Deleting or replacing every indexed row while unindexed rows remain
returns lance to the zero-coverage scan path. ensure_indexes rebuilds
a declared FTS index that covers none of a populated table's rows,
and delete_by_document_id runs index maintenance like the other chunk
writes. A legacy database in that state is repaired by its first write.
2026-08-31 18:54:48 +03:00
Yiorgis Gozadinos
35f8d721b1
Build the chunks FTS index on the first write instead of at table creation
An FTS index built over an empty table indexes nothing and lance never
catches it up on add. ensure_indexes skips FTS while the table is
empty; create, replace_for_document and embed-only rebuild ensure
indexes after writing, so the index always covers at least its first
rows. The first write into a fresh table writes one extra chunks table
version for the index build; a failed build fails the write.
2026-08-31 18:42:31 +03:00
Yiorgis Gozadinos
61df6b65a6
Guard against an FTS index that covers no rows
lance serves unsorted results with matching rows dropped when a
declared FTS index has indexed nothing, or when a populated table has
no FTS index at all. doctor fails on both: vacuum remediation for an
existing index, rebuild --embed-only for a missing one, since optimize
never creates an index. The chunk repository warns once per repository
on the first FTS or hybrid search against either state; a failing
coverage check is logged and never fails the search. Removes
_ensure_fts_index, which had no callers.
2026-08-31 18:42:31 +03:00
Yiorgis Gozadinos
2eaf2c6aea
Split the #590 CHANGELOG entry into Removed and Fixed 2026-08-31 18:41:14 +03:00
Yiorgis Gozadinos
d2b2acef2c
Merge pull request #590 from icearia0219/codex/fix-vector-metric-consistency
Honor configured vector metric during search
2026-08-31 10:39:35 -05:00
icearia0219
b93270adce Honor configured vector metric during search 2026-08-31 21:38:00 +08:00
Yiorgis Gozadinos
22a5b7d17c
Add --full-citations to ask and analyze 2026-08-31 16:31:09 +03:00
Yiorgis Gozadinos
6133e5ff4a
Accept zstd docling blobs in the 0.38.0 migration
v0.25.0 compresses through compress_json, which switched from gzip to
zstd in 0.38.0 — the same release that added this migration. v0.38.0
decompressed with gzip and fell back to a raw UTF-8 decode, and both
fail on a zstd frame, so upgrading any database older than 0.25.0 has
died with UnicodeDecodeError since the migration shipped.

Reported with a fix by @omaer0 in #586.
2026-08-31 12:13:10 +03:00
Yiorgis Gozadinos
a1738c9d3e
vb 2026-08-28 15:56:00 +03:00
Yiorgis Gozadinos
0c67db4459
Accept a /v1 suffix on the vLLM reranker base_url
vllm_base_url moves to utils.py and is shared with the embedder, so the same
endpoint works written either way. Writing /v1 posted to /v1/v1/rerank.
2026-08-28 15:46:42 +03:00
Yiorgis Gozadinos
ad100ecd4d
Reject unknown chat model providers and rename gemini to google 2026-08-28 15:46:20 +03:00
Yiorgis Gozadinos
ee835b77c2
Select a filtered document from the database that holds it
The chat filter modal keys a selection by (database, id): copies of a
database share document ids, and checking one copy left the other
reading as selected. Applying the filter narrows the question's
`sources` to the databases the selection names. A twin id inside
another selected database still matches there: a serialized id filter
cannot carry a source.
2026-08-28 15:12:55 +03:00
Yiorgis Gozadinos
b601489896
Render titles and database names as text, not markup
A database name, document title, uri or heading containing Rich markup
crashed search output, chat citations and the chat document filter with
MarkupError. Every interpolation into markup-parsed text now escapes.
2026-08-28 15:12:19 +03:00
Yiorgis Gozadinos
2bfb661c10
Pin the over-fetch rule, and assert the type a lookup raises
`_fetch_limit` had no test: a text query over-fetches `limit * 10` only with a
reranker, and an image query keeps its vector ranking either way. The sandbox
test asserted `KeyError`, which `UnknownDatabaseError` subclasses, so it could
not tell the contract from a bare one.

`uses_configured_databases` documents a mapping of one as covered; the test
named for it passed no mapping at all. Its `config` parameter is an `AppConfig`.

`test_an_analysis_capability_mounts_the_configured_set` carried a VCR marker and
no cassette, making no HTTP calls.
2026-08-28 14:03:13 +03:00
Yiorgis Gozadinos
dafc15978e
Translate every database-opening failure in haiku-ingester
`ConfigMismatchError` and `SourceUnavailableError` escaped the entry point as
tracebacks rather than a message and exit code 1. The entry-point test is
parametrized over the translated types, so the two CLIs' lists cannot drift
apart silently again.
2026-08-28 09:59:37 +03:00
Yiorgis Gozadinos
249c51c65a
Document which failure a database that will not open raises
Four passages said every missing database raises `FileNotFoundError` and that
errors show locations. A database named in `lancedb.databases` raises
`SourceUnavailableError` instead, naming the database and not its location,
which is the point of naming them. A path you gave keeps `FileNotFoundError` and
still shows the path.
2026-08-28 09:15:26 +03:00
Yiorgis Gozadinos
4d7fdd2d26
Record what the multi-database work changes, and what it measured
`--db-name` selects one database, not a subset: it is not repeatable.

The reranker recommendation was one-sided. It reports both measured effects now:
stronger aggregate retrieval across shards, and weaker attribution between
near-identical documents, where fusion keeps twins apart because each database
contributes its own top-ranked result.

Image queries are vector-only and skip the reranker.

The changelog described components of the new feature as fixes to the last
release. They are one Added entry, and the changes a user upgrading does see —
`settings` printing YAML, the document filter paging and searching, `list`
printing only the fields a document has — are listed.
2026-08-27 18:04:28 +03:00
Yiorgis Gozadinos
87367759f9
Say what makes a cited chunk id ambiguous
The documented rule was existence in more than one selected database. The rule
is narrower and does not need to be wider: a copy the search never returned
grounded nothing, so the retrieved result is the citation and its database is
recorded rather than guessed.

The page now states the whole rule, including the fallback's own check for an
id no search returned. Two retrieved copies are refused, and so is an id
already cited from another database in the conversation. The case between them
had no test.
2026-08-27 14:09:01 +03:00
Yiorgis Gozadinos
746b663a2f
Correct the multi-database prose
`resolve_citations` documented the behaviour it now rejects: a shared chunk id
resolving to whichever result came last.

The storage page ran two embedding checks together as if the second explained
the first. They are separate: each database against the configuration on open,
and the databases in a selection against each other, which raises in read-only
mode too and does not apply to full-text search.

`several` becomes `multiple` where it names the feature, matching the docs and
`covers_multiple`.
2026-08-27 11:40:52 +03:00
Yiorgis Gozadinos
8ed24d0e24
Tighten the multi-database documentation
Restructure the storage page into search and provenance, duplicate ids,
ranking, Python operations and CLI commands, and state each in reference
voice. `Several Databases` becomes `Multiple Databases`, with the anchor
carried through every referrer, and the instruction files follow the same
name. Example databases are `papers`, `wiki` and `notes`.

`AmbiguousCitationError` is raised for a cited chunk id held by more than one
selected database, not for any shared id.
2026-08-26 17:23:02 +03:00
Yiorgis Gozadinos
db5f61d740
Rename the database selector to --db-name
`--database` and `--db` read as one word abbreviated but take different
things, a configured name against a filesystem path, and they sit in
different positions: `haiku-rag --db /path info` fails with `No such option`.
The CLI already says "database" to the user everywhere it prints one, so the
name it selects by should say the same. Unreleased, so no deprecation.

Also: without a reranker, raise `search.limit` with the number of databases
searched, since each contributes its best matches to a list truncated back
to the limit.
2026-08-26 16:48:27 +03:00
Yiorgis Gozadinos
2000098e16
Say which commands cover a set, and what a shared id does
Three groups, not two: `search`, `ask`, `analyze` and `chat` cover the set,
`settings`, `init-config` and `download-models` open no database, and every
other command works on one — or on a configured set of one, which is
unambiguous and keeps its name. A database named in `lancedb.databases` keeps
that name whether or not it is the only one covered; only `lancedb.uri` places
one without naming it.

Document ids repeat between copies of a database, where the sandbox refuses a
duplicate but the chat filter's `id IN (...)` matches the document in every
copy. `build_document_id_filter` claimed ids never widen a selection.

Document the facade: `covers_multiple`, `source_names`, `source`,
`reader_for`, `clients_for`, the lifetime of a borrowed client, and
`sources=None` against `sources=[]`.

Drop the vision callout from the README, which the features list already
covers.
2026-08-26 13:03:58 +03:00