Commit graph

62 commits

Author SHA1 Message Date
Yiorgis Gozadinos
e8f00fcff4
Make get_config the only configuration lookup
haiku.rag.config exported two configuration instances: the lazy _config
behind get_config/set_config, and Config, loaded at import time. Nothing
linked them, and eleven signatures captured Config as a default argument,
so set_config could not reach the factories, the client, the store or the
MCP server. reranking/base.py went further and snapshotted the configured
reranker name into a class attribute at import.

Config is removed. Internal defaults are config: AppConfig | None = None,
resolved through get_config() per call. RerankerBase._model is None and
CohereReranker takes its model name as an argument, like every other
reranker.

The suite patched attributes on Config while production read the instance
get_config() returns, a different object, so those patches were no-ops
waiting to happen. They now go through get_config().
2026-08-19 14:43:40 +03:00
Yiorgis Gozadinos
2da294b850
Put multi-table writes behind one transaction boundary
Four call sites repeated lock, snapshot, try/except, restore. Each used
restore_table_versions, which restores in _tables() order — documents
first, contradicting RESTORE_TABLE_ORDER — and each caught Exception, so
a cancellation mid-write skipped rollback and left the earlier table
writes committed.

Store.write_transaction() holds the lock, snapshots under it, and rolls
back through _rollback_to_snapshot: RESTORE_TABLE_ORDER, shielded from
cancellation, absorbed cancellation re-delivered, rollback failure raised
with the original as cause. The two single-table update_meta sites keep
the bare lock.

The batch documents write moves inside the guarded body; it was outside
the try, so a failure there was never rolled back. Auto-vacuum is
scheduled after the transaction rather than inside it.

restore_table_versions is removed; those four sites were its only callers.
2026-08-19 14:05:40 +03:00
Yiorgis Gozadinos
da207da106
Read the table list and settings once per open
Opening a database ran `list_tables` three times, opened the settings table
twice, and read and parsed the same settings row three times: once for the stored
vector dimension, once for the version behind the migration check, and once for
config validation. On object storage each of those is a round trip.

`_initialize` now reads both once and threads them down. `_init_tables` and
`_check_migrations` take what it read instead of fetching their own copy, and
`validate_config_compatibility` accepts the settings it should compare against,
still reading for itself when called directly.

Passing the pre-init read to validation is equivalent: nothing between the read
and the validation rewrites `embeddings`, which is all it compares.

The settings read no longer swallows every exception. It did before, when the
only consequence was falling back to the configured vector dimension; now the
same empty result feeds the migration check, where it would read as version
0.0.0 and declare every migration pending. Only decode failures are tolerated,
and a decoded non-object normalizes to {} rather than reaching callers that
expect a mapping.
2026-08-18 14:58:17 +03:00
Yiorgis Gozadinos
6f976ef2a9
Share the LanceDB session across connections
Every `Store` built its own connection with its own caches and discarded them on
close, so the index a vector query loads was refetched by the next connection.
On object storage that first fetch dominates: measured on a ~500k-chunk 2560-dim
corpus over a ~200ms link, the first query cost ~41s and the second ~3s, and a
new connection reusing the session cost ~7s instead of ~47s.

`connect_lancedb` now passes a process-wide session, keyed on the configured
cache sizes so a caller asking for different sizes gets its own.

Also sets `read_consistency_interval`, defaulting to 30s. It was None, meaning a
connection never re-checked for other processes' writes. Per-call connections hid
that; a shared session makes connections long-lived enough for a reader to go
stale against the ingester.

All three settings reject negatives at the config boundary. A negative cache size
raises OverflowError and a negative interval panics inside Lance, so neither is
catchable further in. Zero stays valid for both: no cache, and check on every
read.

The routing tests now assert the kwargs they care about rather than the full call
signature, since every connection carries the two new kwargs.
2026-08-18 14:58:17 +03:00
Yiorgis Gozadinos
11644c7f43
Trim comments, docstrings and docs to what they need to say
Also drops two things that were stale rather than merely verbose: the CLI docs
note for 0.75.0, which was the only release-tagged note in the docs tree while
the CHANGELOG already records that existing databases need `haiku-rag migrate`;
and "(created or corrected)" from the migration log line, left over from the
earlier behaviour that replaced wrong-typed indexes.
2026-08-18 12:38:02 +03:00
Yiorgis Gozadinos
8e93b639bc
Migrate existing databases to the full index set
Adds the 0.75.0 upgrade, which brings a pre-existing database up to the index
set `_init_tables` now creates. It rewrites no table data, so unlike the earlier
data migrations its cost is the index builds alone, each of which reads the
column it indexes.

`ensure_indexes` ensures an index of the declared *type* covers each declared
column, rather than checking that the column is indexed at all. The distinction
is what makes it safe to run against a database of unknown provenance:

- A wrong-typed index no longer satisfies the check. A BTree on `label` covers
  the column while losing the low-cardinality equality lookup the Bitmap is for.
- Nothing is dropped or converted away from. Two index types over one column can
  be deliberate, serving different query shapes, so an index this function did
  not declare survives even on a column it does. The one thing it overwrites is
  an index at LanceDB's default name, `{column}_idx`, which is the name it
  creates itself.
- A column already carrying the declared type is skipped, so a database with the
  full set migrates instantly rather than re-sorting every indexed column.
- Undeclared columns are untouched, so a vector index on `chunks` survives.

It returns the columns it acted on, because a change is not always visible from
outside: adding a Bitmap beside an existing BTree leaves the column indexed
before and after.

The version bump to 0.75.0 is required, not incidental: `_set_initial_version`
stamps a new database with the installed package version, so a migration
numbered above it would be pending the moment the database was created.

`test_client_update_document_replaces_rows_with_bounded_versions` turns
auto_vacuum off. Indexing `documents` means a background vacuum now has an index
to maintain on that table, so `optimize()` writes a version where it previously
had nothing to do, and it landed inside the window the test measures. The
document update itself is still one version, so the bound stays exact.
2026-08-17 16:34:58 +03:00
Yiorgis Gozadinos
c184a25d68
Index every hot lookup key from one shared definition
`_init_tables` left `chunks.id`, `chunks.document_id` and `documents.id`
unindexed, so those lookups scanned the column. On object storage that is
network I/O per query, on paths that run per document: citation lookup,
delete-by-document, the re-ingest merge, and every dedup probe.

Declare the index set per table in `index_specs()` and apply it through
`ensure_indexes()`, which skips a column only when it is already indexed with
the declared type. Both halves of that are load-bearing. Skipping is required
because `create_index(replace=True)` rebuilds an identical index, writing a new
index and a new table version and orphaning the old files until the next vacuum.
Comparing the type is required because column coverage alone would let a
wrong-typed index stand, and a BTree on `label` silently loses the
low-cardinality equality lookup the Bitmap is there for.

Columns not declared for a table are left alone, so an externally created index
such as a vector index on `chunks` survives.

`_init_tables`, `recreate_embeddings_table`, `ChunkRepository.delete_all` and
`DocumentRepository.delete_all` now all route through it instead of repeating
their own subsets.

Also recreate `document_items` from `get_document_items_arrow_schema()` in
`DocumentRepository.delete_all`, which was using the LanceModel and so returned
`picture_data` as 32-bit `binary`.

Existing databases are unchanged; the migration follows separately.
2026-08-17 15:05:37 +03:00
Yiorgis Gozadinos
7ba78fdde3
Normalize pragma comments to the codebase's single-line form 2026-07-26 20:18:19 +03:00
Yiorgis Gozadinos
f6acb65e95
Reach and enforce 100% coverage
Cover the remaining paths in the client, context, downloads, title
generation, document tools and store models, and add fail_under=100 so
uncovered lines fail CI.

Six lines that no test can reach get a pragma with its reason: the docling
import guard, the nameless PDF attachment, the FS symlink OSError guard that
resolve(strict=False) absorbs, the docling bbox and LanceDB document-id
shape guards, the tag-retention branch vacuum makes unreachable, and Monty's
Rust-thread print callback.

Fix test_find_config_file_user_config, which wrote its config into the cwd it
had chdir'd to, so the cwd branch answered first and the user-directory
lookup it names was never exercised.
2026-07-26 20:11:02 +03:00
Yiorgis Gozadinos
dddaf0f84c
Remove unreachable code and fix two defects it surfaced
Delete repository methods with no callers (SettingsRepository CRUD,
ChunkRepository.update/delete/get_chunks_in_range), the DataFrame branch of
_process_search_results whose only caller always passes a query, and guards
that cannot be reached from their call sites: the rebuild mode=None default,
the staging drop already performed by _resolve_rebuild_recovery, the empty
batch skip, two context fast paths, the doctor prefix guard, the poller
_task attribute that is never assigned, and a docling caption fallback for
a field name no item class defines.

set_haiku_version built a recreated settings row from the process-global
Config rather than the store's own, so a store opened with a custom config
stamped global settings into the database.

check_source_accessible called urlparse outside its try block, so a stored
URI with a malformed IPv6 host raised ValueError instead of reporting the
source as inaccessible, aborting the whole rebuild sweep.
2026-07-26 18:45:48 +03:00
Yiorgis Gozadinos
f02cde5ddf
Fix same-tick cancellation losing recovery results in _wait_protected 2026-07-16 13:11:35 +03:00
Yiorgis Gozadinos
dd2817ff6d
Protect tag-creation cleanup from cancellation 2026-07-16 13:11:35 +03:00
Yiorgis Gozadinos
1f88944ada
Protect restore rollback from cancellation; report delete_tag listing failures 2026-07-16 13:11:34 +03:00
Yiorgis Gozadinos
f41ec379df
Add Store.restore_tag 2026-07-16 13:11:34 +03:00
Yiorgis Gozadinos
a1f3435df3
Vacuum suppresses OSError only 2026-07-16 13:11:34 +03:00
Yiorgis Gozadinos
f997d7adc9
Consolidate tag primitives 2026-07-16 13:11:34 +03:00
Yiorgis Gozadinos
0e271eaf4b
Remove --before/--at time travel 2026-07-16 13:11:33 +03:00
Yiorgis Gozadinos
0813a1c980
Add tag CLI commands and history tag annotations 2026-07-16 13:11:27 +03:00
Yiorgis Gozadinos
0cbde6b7a2
Serialize tag operations, vacuum, and metadata refresh with writes 2026-07-16 12:32:57 +03:00
Yiorgis Gozadinos
69319c9390
Grow vacuum retention to protect tagged versions 2026-07-16 12:32:57 +03:00
Yiorgis Gozadinos
ae603d9b4d
Add database-level tag primitives to Store 2026-07-16 12:32:56 +03:00
Yiorgis Gozadinos
a1cf405cae
Rename document_meta identity column document_id to id 2026-07-08 16:32:55 +03:00
Yiorgis Gozadinos
bfc51b8b28
urface document_meta in info, history, and the inspector 2026-06-12 10:17:18 +03:00
Yiorgis Gozadinos
3366a6d383
Split meta document attributes into a document_meta table 2026-06-12 10:17:17 +03:00
Yiorgis Gozadinos
4bc52f0710
Serialize multi-table document writes and bound update version churn 2026-06-12 10:16:39 +03:00
Yiorgis Gozadinos
0be2e5b24f
Extract gather_database_info shared by the info command 2026-06-09 11:09:28 +03:00
Yiorgis Gozadinos
b6bbea3d64
Stop writing the schema version on database open 2026-06-05 10:32:30 +03:00
Yiorgis Gozadinos
1360303edf
persist docling heading hierarchy on document_items 2026-05-18 16:48:34 +03:00
Yiorgis Gozadinos
dc16f74b58
add picture_data column to document_items 2026-04-30 11:23:29 +03:00
Tres Seaver
0d70f4aec6
fix: pass absolute 'db_path' to 'lancedb.connect_async'
Closes #354.
2026-04-24 17:59:01 -04:00
Yiorgis Gozadinos
31fc22ce9d
List tables consistently 2026-04-24 15:57:07 +03:00
Yiorgis Gozadinos
cd4224a727
drop private title/embedding forwarders from HaikuRAG 2026-04-24 15:52:50 +03:00
Yiorgis Gozadinos
b23bad32c3
Check table_names() before dropping chunks in recreate_embeddings_table 2026-04-24 15:32:06 +03:00
Yiorgis Gozadinos
aca3ccc29f
Close connections if __aenter__ fails mid-initialization 2026-04-24 14:43:59 +03:00
Yiorgis Gozadinos
a74c3a6f9e
Satisfy ty by adding a typed to_pydantic helper 2026-04-24 14:42:53 +03:00
Yiorgis Gozadinos
57385506c1
Fix is_new_db detection when create=True is passed on an existing DB 2026-04-24 14:42:53 +03:00
Yiorgis Gozadinos
82fd10e0ee
Migrate LanceDB to native async API
Convert all LanceDB operations from sync calls wrapped in async
functions to the native async API (connect_async, AsyncConnection,
AsyncTable, AsyncQuery). Database I/O no longer blocks the event loop.

- Store and HaikuRAG use async context managers (async with). Store
  initialization is deferred to __aenter__; direct construction
  without async with is no longer supported.
- Index creation uses config objects (FTS, BTree, IvfPq) instead of
  string-based index_type parameter.
- Upgrade callbacks are async.
- HaikuRAG tracks background vacuum tasks and awaits them in __aexit__
  and before destructive rebuild operations to avoid races with
  concurrent table mutations.
- temp_db_path fixture uses pytest's tmp_path for reliable async
  cleanup.
2026-04-24 14:42:52 +03:00
Yiorgis Gozadinos
a1181ff52d
extract get_database_stats and share it across info, inspector, and backend 2026-04-17 15:33:30 +03:00
Yiorgis Gozadinos
364b1bc509
add document_items table for fast context expansion 2026-04-16 12:11:53 +03:00
Yiorgis Gozadinos
a118ee7aaa
Cleanup 2026-04-08 14:19:33 +03:00
Yiorgis Gozadinos
8e876ef28d
For remote stores, detect new db by checking if tables exist 2026-04-08 14:19:10 +03:00
Yiorgis Gozadinos
110accb8e7
Add ConnectionMode enum (LOCAL/CLOUD/OBJECT_STORAGE) and connect_lancedb() utility to support S3, GCS, Azure, and HDFS backends via storage_options. 2026-04-08 14:19:09 +03:00
Yiorgis Gozadinos
53445b8722
Add docling_pages column to DocumentRecord/Document for separate page image storage. 2026-04-08 14:04:32 +03:00
Tres Seaver
53481a7d7a
chore: suppress deprecation wwarning from 'lancedb' 2026-03-12 17:11:58 -04:00
Yiorgis Gozadinos
b8c377da1e
Prevent read-only mode from creating tables in empty directories 2026-03-12 11:42:04 +02:00
Yiorgis Gozadinos
5e55c0df54
replace pyright with ty type checker 2026-01-19 15:50:14 +02:00
Yiorgis Gozadinos
5464d24483
require explicit migrate command for database migrations 2026-01-19 13:22:09 +02:00
Yiorgis Gozadinos
8bdfbe526c
Fix embed-only rebuild with changed vector dimensions
When a database was created with one embedding model and rebuild
--embed-only was run with a different model, it failed with a
vector dimension validation error.

- Store reads stored vector_dim when opening existing databases
- _rebuild_embed_only recreates chunks table to handle dimension changes
- Add test for rebuild with changed vector dimensions
2026-01-14 17:42:28 +02:00
Yiorgis Gozadinos
afc5b02285
Update schema to store docling_document as compressed bytes
- Change DocumentRecord.docling_document_json (str) to docling_document (bytes)
- Use large_binary Arrow type (64-bit offsets) to avoid 2GB column limit
- Decompress in Document.get_docling_document() using gzip
- Update DocumentRepository field mappings
2026-01-10 15:17:27 +02:00
Yiorgis Gozadinos
c9cb005d07
Use FTS on contextualized text 2025-12-29 14:50:07 +02:00