Commit graph

140 commits

Author SHA1 Message Date
Yiorgis Gozadinos
e8f00fcff4
Make get_config the only configuration lookup
haiku.rag.config exported two configuration instances: the lazy _config
behind get_config/set_config, and Config, loaded at import time. Nothing
linked them, and eleven signatures captured Config as a default argument,
so set_config could not reach the factories, the client, the store or the
MCP server. reranking/base.py went further and snapshotted the configured
reranker name into a class attribute at import.

Config is removed. Internal defaults are config: AppConfig | None = None,
resolved through get_config() per call. RerankerBase._model is None and
CohereReranker takes its model name as an argument, like every other
reranker.

The suite patched attributes on Config while production read the instance
get_config() returns, a different object, so those patches were no-ops
waiting to happen. They now go through get_config().
2026-08-19 14:43:40 +03:00
Yiorgis Gozadinos
2da294b850
Put multi-table writes behind one transaction boundary
Four call sites repeated lock, snapshot, try/except, restore. Each used
restore_table_versions, which restores in _tables() order — documents
first, contradicting RESTORE_TABLE_ORDER — and each caught Exception, so
a cancellation mid-write skipped rollback and left the earlier table
writes committed.

Store.write_transaction() holds the lock, snapshots under it, and rolls
back through _rollback_to_snapshot: RESTORE_TABLE_ORDER, shielded from
cancellation, absorbed cancellation re-delivered, rollback failure raised
with the original as cause. The two single-table update_meta sites keep
the bare lock.

The batch documents write moves inside the guarded body; it was outside
the try, so a failure there was never rolled back. Auto-vacuum is
scheduled after the transaction rather than inside it.

restore_table_versions is removed; those four sites were its only callers.
2026-08-19 14:05:40 +03:00
Yiorgis Gozadinos
73944f91ea
Close the source adapter one-shot ingestion builds
create_document_from_source resolves a fetcher per call and never closed
it, so every one-shot URL or WebDAV ingest leaked an httpx connection
pool. Close it, but only when we built it: resolve_adhoc_fetcher returns
a caller-supplied source when one matches the URI, and the ingester keeps
those open across jobs.

Directory ingestion also yielded symlinked files resolving outside the
directory it was given. rglob does not recurse into symlinked
directories, so a symlinked file was the only way out of the tree; skip
those, as FSSource.discover already does.

The chunk repository docstring named client._ensure_chunks_embedded,
which does not exist.
2026-08-19 13:14:21 +03:00
Yiorgis Gozadinos
895b5f0532
Refresh source-backed documents in place on a FULL rebuild
FULL rebuild deleted a document before re-ingesting it from its URI, and
the handler around that logged and continued. A 404, a timeout or any
conversion error therefore removed the document permanently.

Deleting after a successful create is not an alternative:
create_document_from_source resolves the same URI to the existing
document and updates it in place, so a trailing delete would remove the
freshly rebuilt row.

Refresh in place instead. create_document_from_source takes an internal
force flag that skips the revision and MD5 short-circuits, so an
unchanged source is still re-converted, re-chunked and re-embedded into
the existing document, and the document id survives a rebuild.

A failed refresh now falls through to the stored-content path rather
than skipping the document: FULL recreates the chunks table before the
loop, so skipping left the document present but unsearchable until the
next rebuild.

The pending-batch flush moves out of the try. A failed flush is a lost
write and should abort the rebuild, not be logged and skipped.
2026-08-19 13:06:39 +03:00
Yiorgis Gozadinos
62da6086b8
Stop the reranker fetch reading text it discards
Collapsing the caption text into `get_pictures_grouped` served the enrichment
path, which uses it, but the multimodal reranker discards the second return value
while still paying to read the column. That is the widest fan-out in the codebase,
`limit * 10` candidates, and it previously projected self_ref and picture_data
alone.

`with_text` is opt-in and off by default, so the cheap projection is what a caller
gets unless it asks for more. The reranker test asserts the projection as well as
the query count, since a count alone would not notice the column coming back.
2026-08-18 18:00:00 +03:00
Yiorgis Gozadinos
28217fcf82
Keep result order when expansion is batched
Splitting the assembly into a passthrough pass and an expandable pass reordered
equal-scored results: the score sort that follows is stable, so the order results
arrive in is the tiebreak. Results are assembled in document_groups order again,
after the batched fetch rather than around it.

Also ports the caption negative cases the removed single-document test carried: a
table's caption and an ordinary text reference map to no picture.
2026-08-18 17:41:10 +03:00
Yiorgis Gozadinos
460215158d
Batch the multimodal reranker's picture fetch
`_attach_picture_data` fetched picture bytes once per document, over the
`limit * 10` candidates reranking asks for, so it was the per-document fetch with
the most candidates behind it. It now issues one query however many documents the
candidates span: one for ten documents, as for one.

Removes `get_text_for_refs`, whose only caller now gets the text back with the
bytes from `get_pictures_grouped`.

`test_client_search_include_images_false_skips_lookup` returned no search
results, so asserting the picture accessor went uncalled held whatever the code
did. It now returns a picture-carrying result, making "did not fetch" the
assertion rather than "had nothing to fetch".
2026-08-18 16:58:26 +03:00
Yiorgis Gozadinos
5b0444043a
Batch context expansion across documents
`expand_with_items` fetched its own inputs per document: one query to resolve
refs to positions, one for the window of items around them. A result set spanning
N documents cost 2N queries, which was 10 of the 18 measured for a limit=5 search
on a remote object-store corpus.

`expand_context` now does both fetches once for every document it is expanding,
and `expand_with_items` takes the positions and items it needs. Two queries for
one document, and two for five.

Each document keeps its own inclusive window in `get_items_in_ranges`. Positions
repeat across documents, so a shared range would splice one document's items into
another's context.
2026-08-18 16:35:17 +03:00
Yiorgis Gozadinos
af6a6b0bbe
Batch search enrichment across documents
`_populate_image_data` ran its stages once per result document, so a result set
spanning N documents cost 4N `document_items` queries. Measured on a remote
object-store corpus, a limit=5 search with expansion was 18 queries, 16 of them
against `document_items`.

The stages now run once each across every document, and flat in document count:
two queries for the dependent caption-to-picture mapping when results ranked on a
caption, one for the picture bytes. Two queries for a picture-ref result set,
three at most.

Picture text comes back with the bytes rather than from a second query, since it
is on the same rows.

Predicates are per document, `(document_id = 'a' AND self_ref IN (…)) OR (…)`,
rather than `self_ref IN (union)`. self_ref and position values repeat across
documents, so a union predicate would return other documents' rows: for
picture_data that fetches blobs nobody asked for, and it can hand one document
another document's picture.
2026-08-18 16:23:16 +03:00
Yiorgis Gozadinos
0882dc9fed
Lend the caller's client to the capability
`client.ask` and `client.analyze` built their capability from a db_path, so the
capability opened a second connection to the database the client already had
open, once per call.

Ownership is now explicit rather than inferred. `rag` stays the connection the
capability opened and must close; `borrowed_rag` is a caller's, which
`_ensure_rag` prefers and `_close` never touches. Two fields rather than a flag,
so closing a borrowed connection is not expressible.

`for_run` still clears `rag` per run, since a run owns what it opens. It leaves
`borrowed_rag` alone: that connection belongs to the caller and outlives the run.
2026-08-18 14:58:18 +03:00
Yiorgis Gozadinos
bf94efc655
Simplify the eval harness and share the embed-fill path. 2026-08-17 10:56:26 +03:00
Yiorgis Gozadinos
cc04f92f28
Batch embeddings across import_documents batches
_store_documents_with_chunks embedded each document's chunks in its own
embed_chunks call; chunks missing embeddings are now flattened across the
whole batch, embedded in one pass honoring embeddings.batch_size, and
assigned back positionally.
2026-08-17 10:52:11 +03:00
Yiorgis Gozadinos
eb11a165b8
Stop loading page rasters on the title and update paths 2026-08-06 13:04:51 +03:00
Yiorgis Gozadinos
ac9b2cbf81
Load document blobs only when asked 2026-08-06 13:04:51 +03:00
Yiorgis Gozadinos
8b45f81464
Load only content when listing documents with include_content 2026-07-31 10:12:19 +03:00
Yiorgis Gozadinos
5200b71e2b
Correct two justifications
Drop the coverage-gate CHANGELOG entry: it is dev infrastructure, invisible
to anyone upgrading. Broaden the check_source_accessible entry to the cases
it now covers.

The nameless-attachment guard reads an empty /F out of untrusted PDF bytes,
so it is boundary validation, not a formality; only the reason it goes
uncovered belongs in the pragma.
2026-07-27 12:18:15 +03:00
Yiorgis Gozadinos
f96a428ef1
Fix defects found reviewing the coverage work
check_source_accessible narrowed its handler to ValueError, but Path.exists
re-raises errno values outside its ignored set (EACCES, ENAMETOOLONG). Those
were swallowed before and now escaped into the rebuild sweep the guard exists
to protect. Catch OSError too.

Restore the arity guard in _common_path_prefix: without it an empty list
raises from min() and a single label yields a prefix covering the whole path.

Two tests would have hung rather than failed on regression (the vacuum skip
and the protected-wait cancellation); both are now bounded. The import
vacuum test raced against the done-callback that discards the task, and now
spies on the call instead, with a negative control.

Replace assertions that could not fail: blank-query search against an empty
corpus, a batch flush counted against an empty table, a picture description
asserting its own input state, and an FS scheme check with nothing on disk to
resolve. The get_model matrix asserted only the returned type across 26
cases and now pins the per-provider settings. The three batching tests now
count flushes, which revealed embed-only writes through chunks_table.add
rather than _flush_rebuild_batch.
2026-07-27 10:44:32 +03:00
Yiorgis Gozadinos
7ba78fdde3
Normalize pragma comments to the codebase's single-line form 2026-07-26 20:18:19 +03:00
Yiorgis Gozadinos
f6acb65e95
Reach and enforce 100% coverage
Cover the remaining paths in the client, context, downloads, title
generation, document tools and store models, and add fail_under=100 so
uncovered lines fail CI.

Six lines that no test can reach get a pragma with its reason: the docling
import guard, the nameless PDF attachment, the FS symlink OSError guard that
resolve(strict=False) absorbs, the docling bbox and LanceDB document-id
shape guards, the tag-retention branch vacuum makes unreachable, and Monty's
Rust-thread print callback.

Fix test_find_config_file_user_config, which wrote its config into the cwd it
had chdir'd to, so the cwd branch answered first and the user-directory
lookup it names was never exercised.
2026-07-26 20:11:02 +03:00
Yiorgis Gozadinos
dddaf0f84c
Remove unreachable code and fix two defects it surfaced
Delete repository methods with no callers (SettingsRepository CRUD,
ChunkRepository.update/delete/get_chunks_in_range), the DataFrame branch of
_process_search_results whose only caller always passes a query, and guards
that cannot be reached from their call sites: the rebuild mode=None default,
the staging drop already performed by _resolve_rebuild_recovery, the empty
batch skip, two context fast paths, the doctor prefix guard, the poller
_task attribute that is never assigned, and a docling caption fallback for
a field name no item class defines.

set_haiku_version built a recreated settings row from the process-global
Config rather than the store's own, so a store opened with a custom config
stamped global settings into the database.

check_source_accessible called urlparse outside its try block, so a stored
URI with a malformed IPv6 host raised ValueError instead of reporting the
source as inaccessible, aborting the whole rebuild sweep.
2026-07-26 18:45:48 +03:00
Yiorgis Gozadinos
4c5050d161
Accept images on ask/analyze 2026-07-25 10:23:55 +03:00
Yiorgis Gozadinos
77585ef26a
fix per-question capability limits and tool isolation 2026-07-24 15:26:18 +03:00
Yiorgis Gozadinos
9deb1f2bd4
replace haiku.skills with native Pydantic AI capabilities 2026-07-24 15:26:17 +03:00
Yiorgis Gozadinos
543aba7547
Multimodal reranking: send picture chunks to vllm rerankers as images
reranking.multimodal (vllm provider only) attaches picture bytes to
synthetic picture chunks before rerank; VLLMReranker sends them as
content-parts documents (base64 data URI + description text) in the
same /v1/rerank request as plain text documents.
2026-07-24 12:29:20 +03:00
Yiorgis Gozadinos
1ed424b50d
Serialize metadata-only document updates with the write lock 2026-07-16 13:11:35 +03:00
Yiorgis Gozadinos
0e271eaf4b
Remove --before/--at time travel 2026-07-16 13:11:33 +03:00
Yiorgis Gozadinos
0813a1c980
Add tag CLI commands and history tag annotations 2026-07-16 13:11:27 +03:00
Yiorgis Gozadinos
0cbde6b7a2
Serialize tag operations, vacuum, and metadata refresh with writes 2026-07-16 12:32:57 +03:00
Yiorgis Gozadinos
144900d385
Remove the mxbai reranking provider 2026-07-14 11:09:55 +03:00
Yiorgis Gozadinos
e7d5a0440d
Tune two-tone visualization colors 2026-07-09 15:37:25 +03:00
Yiorgis Gozadinos
18c0f6c5e8
Add --no-expand to the visualize command for chunk-only grounding 2026-07-09 12:49:42 +03:00
Yiorgis Gozadinos
995d081aa1
Visualize the exact context the model saw via Citation.doc_item_refs
visualize_chunk re-expanded chunks from scratch to recover their refs,
which could not faithfully reproduce the original merge, scores, and
clip — so a visualization could highlight different pages than the
citation covered. Carry the cited items on Citation.doc_item_refs and
resolve bounding boxes from them directly; re-expansion remains only as
the fallback for callers with no stored context (CLI, inspector). Chat,
inspector, the app endpoint, and the frontend pass the refs through.
2026-07-09 11:51:37 +03:00
Yiorgis Gozadinos
6d86237dd6
Draw matched content stronger than expanded context in visualizations 2026-07-09 11:05:41 +03:00
Yiorgis Gozadinos
494f774473
Visualize all constituent chunks of a merged citation 2026-07-09 11:05:41 +03:00
Yiorgis Gozadinos
c02bcd5dc9
Pool HTTP clients for vLLM embedding and vLLM/Jina reranking 2026-07-09 10:32:44 +03:00
Yiorgis Gozadinos
43a580afb3
Dedupe picture chunks and skip small pictures at chunking 2026-07-09 10:24:32 +03:00
Yiorgis Gozadinos
a1cf405cae
Rename document_meta identity column document_id to id 2026-07-08 16:32:55 +03:00
Yiorgis Gozadinos
23bbca5998
Re-check URI under the write lock to prevent duplicate ingestion 2026-07-08 11:26:45 +03:00
Yiorgis Gozadinos
c2c8c24951
Allow updating a document's uri via update_document 2026-07-08 10:32:14 +03:00
Yiorgis Gozadinos
d2593304c5
Attach figure bytes when a result matches its caption 2026-07-03 13:22:02 +03:00
Yiorgis Gozadinos
2b2b475279
Collapse docling compression to a single function 2026-06-24 10:43:27 +03:00
Yiorgis Gozadinos
a1ec310bf4
Add VoyageAI multimodal embedder 2026-06-23 15:23:10 +03:00
Yiorgis Gozadinos
8cb52ca1ed
Merge pull request #459 from mcdonc/thread-rebuild-compress
Thread compress_docling_split in rebuild.py off the asyncio event loop
2026-06-23 09:23:53 +03:00
Yiorgis Gozadinos
775dc58b53
Drop redundant _apply_descriptions_sync unit test, annotate the helper 2026-06-23 09:14:36 +03:00
Yiorgis Gozadinos
0ee36a269d
Merge pull request #460 from mcdonc/thread-processing-iterate
Thread picture chunk merging off the asyncio event loop
2026-06-23 09:05:45 +03:00
Yiorgis Gozadinos
141e288b83
Tighten _merge_picture_chunks type annotations
Restore the typing the merge logic carried inline before extraction:
text_chunks: list[Chunk], existing_picture_data: dict[str, bytes] | None,
-> list[Chunk], and first_pos(c: Chunk) -> int.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-23 08:56:51 +03:00
Yiorgis Gozadinos
4436673f10
Tighten extract_items hoist annotation in _update_document_with_chunks 2026-06-23 08:47:55 +03:00
Chris McDonough
ccab012747 Thread picture chunk merging off the asyncio event loop
Extracts build_picture_chunks + iterate_items position mapping into a
sync helper and wraps it with asyncio.to_thread so image-heavy
documents don't block the event loop during chunking.

Fixes #456.
2026-06-22 14:01:35 -04:00
Chris McDonough
cee9484f35 Fix import sort order 2026-06-22 13:49:59 -04:00
Chris McDonough
d160080ff8 Move lazy imports to module scope 2026-06-22 13:48:09 -04:00