Commit graph

58 commits

Author SHA1 Message Date
Yiorgis Gozadinos
da6cdfbc51
Resolve file:// URIs to paths through url2pathname
urlparse().path keeps the leading slash in front of a Windows drive, so
file:///C:/docs/a.pdf read as \C:\docs\a.pdf and the ingester reported
"File does not exist" for every file it discovered. url2pathname is the
stdlib conversion that strips it, per platform.

Four sites each decided both "is this local" and "what path is this":
FSSource._uri_to_path and supports, resolve_adhoc_fetcher,
create_document_from_source and check_source_accessible, and convert.
is_local_uri and uri_to_path in haiku.rag.uri own those two decisions now,
which closes two more cases of the same root cause. A bare C:\docs\a.pdf
parses with scheme "c", so add-src raised "No source adapter for URI scheme
'c'" and convert silently treated the path as raw text. And convert and
check_source_accessible never percent-decoded at all, so a file named
a[b] c.md read as missing on Linux and macOS too.

A file URI's host is reattached after conversion rather than passed to
url2pathname, which as of 3.14 rejects a non-local authority off Windows.
file:////server/share is the empty-authority spelling of a UNC path, its
host being the first path segment, so that host is normalised into the
authority before conversion. Output is identical on 3.12, 3.13 and 3.14.

The ad-hoc FS fetcher roots at the path's own anchor rather than "/", which
on Windows is only the current drive.

test_uri.py runs on ubuntu, macos and windows across 3.13 and 3.14 without
the project installed: --noconftest because the repo conftest imports
dependencies that job does not need, and -o addopts= to drop the
repository's -n auto. The Windows legs are what cover the drive conversion.

Fixes #574.
2026-08-21 10:22:26 +03:00
Yiorgis Gozadinos
ab19f78507
Move source adapters out of the ingester package
haiku.rag.ingester.sources was never ingester-only: one-shot client
ingestion resolves adapters through it (create_document_from_source), and
convert() now fetches through HTTPSource, so the core client imported into
the ingester package to reach them.

Move the package to haiku.rag.sources and update every import. No shims:
haiku.rag.ingester.sources is gone.

The haiku.rag.sources plugin entry-point group is unchanged, so third-party
source packages need no edit — the group name now matches the module path it
always implied.

Source unit tests move to tests/sources/. test_source_plugins.py stays in
tests/ingester/: it drives a PeriodicPoller against the job repo, so it is
plugin wiring through ingester machinery rather than a source test.
2026-08-20 11:46:55 +03:00
Yiorgis Gozadinos
d1691d3942
Share document preparation and HTTP acquisition
Five call sites repeated the same post-conversion preparation: store the
Docling representation and resolve a title when none was supplied.
_prepare_and_title now owns that sequence. update_document continues to
call _prepare_document_from_docling directly because an explicit update
must preserve an existing empty title.

create_document, both content-replacement branches of update_document,
and source ingestion embedded eagerly before passing chunks to a
persistence funnel that checked them again. The funnels now own
embedding, including the checks required by import_document and
import_documents for caller-supplied chunks.

Move the document.embed span into ensure_chunks_embedded after its early
return. Every path that performs embedding is now instrumented, while
operations whose chunks are already embedded emit no span.

convert() previously used its own HTTP client and temporary-file path.
Route URL conversion through HTTPSource, matching source ingestion, and
move _write_fetch_body to processing.py so both paths share temporary
file handling without an import cycle.

Add walk_files for filesystem enumeration and use it from both
FSSource.discover and one-shot directory ingestion. Symlink escape
filtering now has one implementation.
2026-08-20 10:50:33 +03:00
Yiorgis Gozadinos
2da294b850
Put multi-table writes behind one transaction boundary
Four call sites repeated lock, snapshot, try/except, restore. Each used
restore_table_versions, which restores in _tables() order — documents
first, contradicting RESTORE_TABLE_ORDER — and each caught Exception, so
a cancellation mid-write skipped rollback and left the earlier table
writes committed.

Store.write_transaction() holds the lock, snapshots under it, and rolls
back through _rollback_to_snapshot: RESTORE_TABLE_ORDER, shielded from
cancellation, absorbed cancellation re-delivered, rollback failure raised
with the original as cause. The two single-table update_meta sites keep
the bare lock.

The batch documents write moves inside the guarded body; it was outside
the try, so a failure there was never rolled back. Auto-vacuum is
scheduled after the transaction rather than inside it.

restore_table_versions is removed; those four sites were its only callers.
2026-08-19 14:05:40 +03:00
Yiorgis Gozadinos
73944f91ea
Close the source adapter one-shot ingestion builds
create_document_from_source resolves a fetcher per call and never closed
it, so every one-shot URL or WebDAV ingest leaked an httpx connection
pool. Close it, but only when we built it: resolve_adhoc_fetcher returns
a caller-supplied source when one matches the URI, and the ingester keeps
those open across jobs.

Directory ingestion also yielded symlinked files resolving outside the
directory it was given. rglob does not recurse into symlinked
directories, so a symlinked file was the only way out of the tree; skip
those, as FSSource.discover already does.

The chunk repository docstring named client._ensure_chunks_embedded,
which does not exist.
2026-08-19 13:14:21 +03:00
Yiorgis Gozadinos
895b5f0532
Refresh source-backed documents in place on a FULL rebuild
FULL rebuild deleted a document before re-ingesting it from its URI, and
the handler around that logged and continued. A 404, a timeout or any
conversion error therefore removed the document permanently.

Deleting after a successful create is not an alternative:
create_document_from_source resolves the same URI to the existing
document and updates it in place, so a trailing delete would remove the
freshly rebuilt row.

Refresh in place instead. create_document_from_source takes an internal
force flag that skips the revision and MD5 short-circuits, so an
unchanged source is still re-converted, re-chunked and re-embedded into
the existing document, and the document id survives a rebuild.

A failed refresh now falls through to the stored-content path rather
than skipping the document: FULL recreates the chunks table before the
loop, so skipping left the document present but unsearchable until the
next rebuild.

The pending-batch flush moves out of the try. A failed flush is a lost
write and should abort the rebuild, not be logged and skipped.
2026-08-19 13:06:39 +03:00
Yiorgis Gozadinos
bf94efc655
Simplify the eval harness and share the embed-fill path. 2026-08-17 10:56:26 +03:00
Yiorgis Gozadinos
cc04f92f28
Batch embeddings across import_documents batches
_store_documents_with_chunks embedded each document's chunks in its own
embed_chunks call; chunks missing embeddings are now flattened across the
whole batch, embedded in one pass honoring embeddings.batch_size, and
assigned back positionally.
2026-08-17 10:52:11 +03:00
Yiorgis Gozadinos
eb11a165b8
Stop loading page rasters on the title and update paths 2026-08-06 13:04:51 +03:00
Yiorgis Gozadinos
ac9b2cbf81
Load document blobs only when asked 2026-08-06 13:04:51 +03:00
Yiorgis Gozadinos
5200b71e2b
Correct two justifications
Drop the coverage-gate CHANGELOG entry: it is dev infrastructure, invisible
to anyone upgrading. Broaden the check_source_accessible entry to the cases
it now covers.

The nameless-attachment guard reads an empty /F out of untrusted PDF bytes,
so it is boundary validation, not a formality; only the reason it goes
uncovered belongs in the pragma.
2026-07-27 12:18:15 +03:00
Yiorgis Gozadinos
f96a428ef1
Fix defects found reviewing the coverage work
check_source_accessible narrowed its handler to ValueError, but Path.exists
re-raises errno values outside its ignored set (EACCES, ENAMETOOLONG). Those
were swallowed before and now escaped into the rebuild sweep the guard exists
to protect. Catch OSError too.

Restore the arity guard in _common_path_prefix: without it an empty list
raises from min() and a single label yields a prefix covering the whole path.

Two tests would have hung rather than failed on regression (the vacuum skip
and the protected-wait cancellation); both are now bounded. The import
vacuum test raced against the done-callback that discards the task, and now
spies on the call instead, with a negative control.

Replace assertions that could not fail: blank-query search against an empty
corpus, a batch flush counted against an empty table, a picture description
asserting its own input state, and an FS scheme check with nothing on disk to
resolve. The get_model matrix asserted only the returned type across 26
cases and now pins the per-provider settings. The three batching tests now
count flushes, which revealed embed-only writes through chunks_table.add
rather than _flush_rebuild_batch.
2026-07-27 10:44:32 +03:00
Yiorgis Gozadinos
7ba78fdde3
Normalize pragma comments to the codebase's single-line form 2026-07-26 20:18:19 +03:00
Yiorgis Gozadinos
f6acb65e95
Reach and enforce 100% coverage
Cover the remaining paths in the client, context, downloads, title
generation, document tools and store models, and add fail_under=100 so
uncovered lines fail CI.

Six lines that no test can reach get a pragma with its reason: the docling
import guard, the nameless PDF attachment, the FS symlink OSError guard that
resolve(strict=False) absorbs, the docling bbox and LanceDB document-id
shape guards, the tag-retention branch vacuum makes unreachable, and Monty's
Rust-thread print callback.

Fix test_find_config_file_user_config, which wrote its config into the cwd it
had chdir'd to, so the cwd branch answered first and the user-directory
lookup it names was never exercised.
2026-07-26 20:11:02 +03:00
Yiorgis Gozadinos
dddaf0f84c
Remove unreachable code and fix two defects it surfaced
Delete repository methods with no callers (SettingsRepository CRUD,
ChunkRepository.update/delete/get_chunks_in_range), the DataFrame branch of
_process_search_results whose only caller always passes a query, and guards
that cannot be reached from their call sites: the rebuild mode=None default,
the staging drop already performed by _resolve_rebuild_recovery, the empty
batch skip, two context fast paths, the doctor prefix guard, the poller
_task attribute that is never assigned, and a docling caption fallback for
a field name no item class defines.

set_haiku_version built a recreated settings row from the process-global
Config rather than the store's own, so a store opened with a custom config
stamped global settings into the database.

check_source_accessible called urlparse outside its try block, so a stored
URI with a malformed IPv6 host raised ValueError instead of reporting the
source as inaccessible, aborting the whole rebuild sweep.
2026-07-26 18:45:48 +03:00
Yiorgis Gozadinos
1ed424b50d
Serialize metadata-only document updates with the write lock 2026-07-16 13:11:35 +03:00
Yiorgis Gozadinos
0cbde6b7a2
Serialize tag operations, vacuum, and metadata refresh with writes 2026-07-16 12:32:57 +03:00
Yiorgis Gozadinos
23bbca5998
Re-check URI under the write lock to prevent duplicate ingestion 2026-07-08 11:26:45 +03:00
Yiorgis Gozadinos
c2c8c24951
Allow updating a document's uri via update_document 2026-07-08 10:32:14 +03:00
Yiorgis Gozadinos
4436673f10
Tighten extract_items hoist annotation in _update_document_with_chunks 2026-06-23 08:47:55 +03:00
Chris McDonough
09e78ef46a Thread extract_items off the asyncio event loop
Moves CPU-bound docling document item extraction into worker threads
via asyncio.to_thread so the event loop stays responsive during
ingestion. The extract_items calls are hoisted out of the write lock
(they are pure computation with no DB I/O) and run with placeholder
document IDs that are patched after the DB create returns.

Fixes #453.
2026-06-22 13:19:38 -04:00
Yiorgis Gozadinos
d3a1011baf
write fetched bodies off the event loop 2026-06-22 10:37:48 +03:00
Yiorgis Gozadinos
183d595494
prepare stored Docling blobs off the event loop 2026-06-22 10:30:02 +03:00
bryan davis
faa97f8bc6
improve concurrency management for pdf attachments 2026-06-18 14:30:02 -05:00
Yiorgis Gozadinos
1e65d36766
Pass fetched FetchResult to ingester metadata providers 2026-06-16 16:37:26 +03:00
Yiorgis Gozadinos
70c9c2778f
Serialize all in-process pdfium access under a shared lock 2026-06-14 10:50:42 +03:00
Yiorgis Gozadinos
f2a5ac4246
Throttle background auto-vacuum to at most once per 5 minutes 2026-06-12 10:17:18 +03:00
Yiorgis Gozadinos
3366a6d383
Split meta document attributes into a document_meta table 2026-06-12 10:17:17 +03:00
Yiorgis Gozadinos
4bc52f0710
Serialize multi-table document writes and bound update version churn 2026-06-12 10:16:39 +03:00
Yiorgis Gozadinos
8ac670714d
Tidy PDF attachment extension fix 2026-06-12 09:44:11 +03:00
bryan davis
bce24e84a0
fix for issue with parsing pdf attachment such as *.joboptions files 2026-06-11 16:52:07 -05:00
Yiorgis Gozadinos
c62166b26e
Add /database and /config endpoints to the ingester API 2026-06-09 12:11:33 +03:00
Yiorgis Gozadinos
a7ed405d75
Add HaikuRAG.import_documents for batch document import 2026-06-09 10:23:37 +03:00
Yiorgis Gozadinos
e7c7df2915
Always use the Store-owned embedder 2026-05-29 11:36:53 +03:00
Yiorgis Gozadinos
402957d3e5
Fix CI flakes for PDF attachment extraction 2026-05-28 17:51:02 +03:00
Yiorgis Gozadinos
8e8c4433bd
Extract PDF /EmbeddedFiles attachments as child documents 2026-05-28 15:51:32 +03:00
Yiorgis Gozadinos
26bc71d6d8
Cascade delete_document to children via metadata.parent_uri 2026-05-28 15:36:00 +03:00
Yiorgis Gozadinos
b0d0ac588d
Split snapshot APIs and resolve_fetcher by intent 2026-05-27 14:39:54 +03:00
Yiorgis Gozadinos
d7fdd61fed
Resolve worker source by source_id, not just supports(uri) 2026-05-27 13:36:03 +03:00
Yiorgis Gozadinos
f89cc998eb
add sources_provider to WorkerPool. workers now resolve extra info through these sources 2026-05-26 11:45:35 +03:00
Yiorgis Gozadinos
73f8349a00
Use haiku.rag as telemtry scope 2026-05-26 11:44:47 +03:00
Yiorgis Gozadinos
ed36cc2230
typed UnsupportedSourceError replaces pipeline string-marker matching 2026-05-26 11:44:46 +03:00
Yiorgis Gozadinos
13cbadeb6f
canonical metadata keys: source_revision + content_type, bump to 0.50.0 2026-05-26 11:43:30 +03:00
Yiorgis Gozadinos
fa672c298a
logfire spans for the ingester, nested poller/job/document traces 2026-05-26 11:42:42 +03:00
Yiorgis Gozadinos
6d15f1f247
fix URL-decode file:// paths before stat/exists checks 2026-05-26 11:42:42 +03:00
Yiorgis Gozadinos
7ea61a7b10
drop the old monitor, rename serve→mcp, add e2e tests 2026-05-26 11:42:41 +03:00
Yiorgis Gozadinos
717fc3320b
route create_document_from_source through source adapters 2026-05-26 11:41:54 +03:00
Yiorgis Gozadinos
afd4665517
Thread source_uri through URL ingest 2026-05-12 15:13:02 +03:00
Yiorgis Gozadinos
ef82e6eb08
swap aioboto3 for obstore in the S3 client path 2026-05-11 11:29:42 +03:00
Yiorgis Gozadinos
d009da06d6
support s3:// document sources 2026-05-11 11:28:31 +03:00