Commit graph

116 commits

Author SHA1 Message Date
Yiorgis Gozadinos
f45ed90b33
Add --no-agents to leave the model-backed MCP tools out
haiku-rag mcp --no-agents reaches create_mcp_server(agents=False):
ask_question and analyze are not registered and the instructions drop
the line describing them. qa.model always has a default, so a server
without a usable model cannot be detected from configuration; the flag
is how an operator says so.

Refs #599
2026-09-04 13:00:15 +03:00
Yiorgis Gozadinos
40d40bcbf2
Cover the configured database set from the MCP server
`haiku-rag mcp` passes covers_set=True and _covering no longer refuses a
scope over several databases. search_documents, search_documents_by_image,
ask_question and analyze take `sources`; get_document takes `source`;
DocumentInfo carries `source`. format_citations gains include_source, which
ask_question sets from covers_multiple so citations name their database
only when the server covers several.

Refs #599
2026-09-04 13:00:14 +03:00
Yiorgis Gozadinos
ce69a8c989
Remove the MCP write tools; the server opens read-only
add_document_from_file, add_document_from_url, add_document_from_text
and delete_document are gone. create_mcp_server and _covering lose
read_only; the client always opens with read_only=True, so the
--read-only flag before `mcp` is redundant and the docs, Dockerfiles and
compose example drop it.

Ingestion is `haiku-rag add`/`add-src`/`delete` and haiku-ingester. No
known consumer used the write tools; one stdio server per client window
made multi-writer the accidental default, and streamable HTTP has no auth.

The test_app stub drops a comment and __init__ that described run_mcp
constructing the client positionally; every path goes through _covering.

Refs #599
2026-09-04 12:59:48 +03:00
Yiorgis Gozadinos
34180a0fd1
One reference and one placement for a database
DatabaseRef is a name and a location. The configuration places databases
through lancedb.databases alone; with none configured the default is the
entry haiku.rag under storage.data_dir, selectable like any other.
lancedb.uri is removed, and a config carrying it fails to load with the
replacement spelled out. A path passed from Python is valid where the
configuration places nothing and raises AmbiguousDatabaseError beside
lancedb.databases; haiku-rag --db and haiku-ingester --db construct the
scope directly, so a human's override keeps working. Every database
answers to a name, and a database given as a path keeps its own errors.
2026-09-03 15:12:08 +03:00
Yiorgis Gozadinos
2d8b2cb9ed
Expose search.vector_nprobes
The IVF probe count was the one vector search parameter with no
setting, and it is what bounds recall on a large indexed corpus:
partitions grow with the corpus, so a fixed probe count covers less of
it, and vector_refine_factor can only re-score what the probes
returned. Defaults to 20, matching lance, so search is unchanged.

Also corrects the create-index docs, which predate the measurement:
optimize() covers new chunks, so a rebuild is about retraining
centroids rather than reaching unindexed rows.
2026-09-01 15:54:36 +03:00
Yiorgis Gozadinos
61df6b65a6
Guard against an FTS index that covers no rows
lance serves unsorted results with matching rows dropped when a
declared FTS index has indexed nothing, or when a populated table has
no FTS index at all. doctor fails on both: vacuum remediation for an
existing index, rebuild --embed-only for a missing one, since optimize
never creates an index. The chunk repository warns once per repository
on the first FTS or hybrid search against either state; a failing
coverage check is logged and never fails the search. Removes
_ensure_fts_index, which had no callers.
2026-08-31 18:42:31 +03:00
Yiorgis Gozadinos
d2b2acef2c
Merge pull request #590 from icearia0219/codex/fix-vector-metric-consistency
Honor configured vector metric during search
2026-08-31 10:39:35 -05:00
icearia0219
b93270adce Honor configured vector metric during search 2026-08-31 21:38:00 +08:00
Yiorgis Gozadinos
22a5b7d17c
Add --full-citations to ask and analyze 2026-08-31 16:31:09 +03:00
Yiorgis Gozadinos
09a7076b7e
State what the code does, not what it replaced
Comments and docstrings across the branch narrated rejected
alternatives, consequences and history; each now states the current
contract. Renames test_a_legacy_uri_client_keeps_its_error to
test_an_unnamed_database_keeps_its_error. Documents the Sandbox
connection paths, the citation header's database segment, both
AmbiguousDatabaseError conditions on create_app, and run_inspector's
scope parameter. Doc paragraphs added by the branch in python.md,
storage.md and cli.md are one physical line each.
2026-08-28 15:13:52 +03:00
Yiorgis Gozadinos
8ed24d0e24
Tighten the multi-database documentation
Restructure the storage page into search and provenance, duplicate ids,
ranking, Python operations and CLI commands, and state each in reference
voice. `Several Databases` becomes `Multiple Databases`, with the anchor
carried through every referrer, and the instruction files follow the same
name. Example databases are `papers`, `wiki` and `notes`.

`AmbiguousCitationError` is raised for a cited chunk id held by more than one
selected database, not for any shared id.
2026-08-26 17:23:02 +03:00
Yiorgis Gozadinos
db5f61d740
Rename the database selector to --db-name
`--database` and `--db` read as one word abbreviated but take different
things, a configured name against a filesystem path, and they sit in
different positions: `haiku-rag --db /path info` fails with `No such option`.
The CLI already says "database" to the user everywhere it prints one, so the
name it selects by should say the same. Unreleased, so no deprecation.

Also: without a reranker, raise `search.limit` with the number of databases
searched, since each contributes its best matches to a list truncated back
to the limit.
2026-08-26 16:48:27 +03:00
Yiorgis Gozadinos
2000098e16
Say which commands cover a set, and what a shared id does
Three groups, not two: `search`, `ask`, `analyze` and `chat` cover the set,
`settings`, `init-config` and `download-models` open no database, and every
other command works on one — or on a configured set of one, which is
unambiguous and keeps its name. A database named in `lancedb.databases` keeps
that name whether or not it is the only one covered; only `lancedb.uri` places
one without naming it.

Document ids repeat between copies of a database, where the sandbox refuses a
duplicate but the chat filter's `id IN (...)` matches the document in every
copy. `build_document_id_filter` claimed ids never widen a selection.

Document the facade: `covers_multiple`, `source_names`, `source`,
`reader_for`, `clients_for`, the lifetime of a borrowed client, and
`sources=None` against `sources=[]`.

Drop the vision callout from the README, which the features list already
covers.
2026-08-26 13:03:58 +03:00
Yiorgis Gozadinos
bb92ccf67e
Cover the configured set in the chat TUI
Chat answers with the same capabilities `ask` does, so it federates as
naturally as `ask` and `analyze` — but it went through the one-database
guard and refused a configured set outright, which left no way to chat
across several databases.

The guard was the visible half. `run_chat` also defaulted `db_path` to the
single default path whenever it was None, so lifting the refusal alone
would still have opened one database. It now leaves the path unresolved
when `lancedb.databases` names the set, and the client resolves it.

Listing and counting documents fan out over the set, which is what the
document filter reads, and visual grounding resolves the database holding
the cited chunk through the citation's source: chunks, pages and bounding
boxes all come from that one database. A limit on a listing means that
many documents in total, not that many per database.

The info modal reports every database it covers, each under its
configured name and without its location, since names are the only
identity that leaves the configuration. `database_lines` is what one
database reports about itself, shared by both paths, and it reports a
failure as a line so one unreachable database does not cost the report on
the others.

`inspect` stays a one-database command. It browses one database's
documents and chunks, so a set has nothing to show it.
2026-08-24 10:03:46 +03:00
Yiorgis Gozadinos
e15f73a387
Document searching several databases
lancedb.databases, the sources argument and the --database selector had no
documentation. Adds a Several Databases section to the storage
configuration page covering the name-to-location map, its mutual
exclusion with uri, the shared embedding configuration the set requires,
and which commands cover the set against which work on one. Adds a
Searching Several Databases section to the Python API page, --database to
the CLI's global options, the key to the sample configuration, and one
README feature line.
2026-08-24 10:03:46 +03:00
Yiorgis Gozadinos
c62fd78c7a
Accept images on CLI ask/analyze and MCP tools 2026-07-25 10:35:25 +03:00
Yiorgis Gozadinos
597808c56e
Fix chat analysis-model selection, AG-UI example state, and chat docs
Drive analysis-only chat with analysis.model (falling back to qa.model) so
the running model matches the one the analysis capability configures,
including its vision flag; RAG-bearing chats still run on qa.model.

Give the AG-UI example state-bearing deps and a final STATE_SNAPSHOT so
registered citations reach the client, mirroring the app backend.

Update chat docs: haiku-rag chat uses --capability/-c, and drop the removed
"View state" command-palette entry.
2026-07-24 15:27:20 +03:00
Yiorgis Gozadinos
43c17a6777
fix capability execution limits and chat loading 2026-07-24 15:26:17 +03:00
Yiorgis Gozadinos
9deb1f2bd4
replace haiku.skills with native Pydantic AI capabilities 2026-07-24 15:26:17 +03:00
Yiorgis Gozadinos
1f88944ada
Protect restore rollback from cancellation; report delete_tag listing failures 2026-07-16 13:11:34 +03:00
Yiorgis Gozadinos
ce1b9ac88e
Harden history against tag annotation failures; document tag restore 2026-07-16 13:11:34 +03:00
Yiorgis Gozadinos
0e271eaf4b
Remove --before/--at time travel 2026-07-16 13:11:33 +03:00
Yiorgis Gozadinos
0813a1c980
Add tag CLI commands and history tag annotations 2026-07-16 13:11:27 +03:00
Yiorgis Gozadinos
144900d385
Remove the mxbai reranking provider 2026-07-14 11:09:55 +03:00
Yiorgis Gozadinos
18c0f6c5e8
Add --no-expand to the visualize command for chunk-only grounding 2026-07-09 12:49:42 +03:00
Yiorgis Gozadinos
6d86237dd6
Draw matched content stronger than expanded context in visualizations 2026-07-09 11:05:41 +03:00
Yiorgis Gozadinos
4f8cc4eb30
Show a progress spinner while doctor runs 2026-06-28 10:44:30 +03:00
Yiorgis Gozadinos
b707a70d19
Update docs 2026-06-28 10:24:12 +03:00
Yiorgis Gozadinos
f1e1a16f9b
Add doctor --duplicates-out YAML export; summarize terminal report 2026-06-26 16:52:22 +03:00
Yiorgis Gozadinos
044ac62e49
Drop boilerplate handling; make duplicate report readable 2026-06-26 16:52:22 +03:00
Yiorgis Gozadinos
961913dde4
Ignore boilerplate chunks in duplicate-document detection 2026-06-26 16:52:21 +03:00
Yiorgis Gozadinos
43f2130b66
Add near-duplicate document detection to doctor 2026-06-26 16:52:21 +03:00
Yiorgis Gozadinos
eb855f827a
Refine doctor's content and coverage checks 2026-06-23 11:31:20 +03:00
Yiorgis Gozadinos
cc1d8d1e4c
Add provider connectivity probes to haiku-rag doctor 2026-06-23 10:34:27 +03:00
Yiorgis Gozadinos
c2cb3cedf3
Add haiku-rag doctor database health check 2026-06-23 10:03:27 +03:00
Yiorgis Gozadinos
6c04dd5881
docs 2026-06-12 10:17:18 +03:00
Yiorgis Gozadinos
0e3d53791f
Add rebuild --set-embedder to reconcile embedder identity 2026-06-05 10:42:15 +03:00
Yiorgis Gozadinos
f4468b65ee
Add --host, --port to ingester cli, update docker compose example 2026-05-26 11:44:45 +03:00
Yiorgis Gozadinos
66d5fee682
Docker & docs updates 2026-05-26 11:44:45 +03:00
Yiorgis Gozadinos
7ea61a7b10
drop the old monitor, rename serve→mcp, add e2e tests 2026-05-26 11:42:41 +03:00
Yiorgis Gozadinos
0ee00334c7
drop prose emdashes and semicolons; minor fixes 2026-05-20 14:27:16 +03:00
Yiorgis Gozadinos
19e2be003e
docs: add chat page, restructure nav, reorder sections 2026-05-20 14:27:16 +03:00
Yiorgis Gozadinos
8c57a3ca99
Drop the multi-agent research workflow 2026-05-20 12:46:48 +03:00
Yiorgis Gozadinos
6f95e2bc27
Delete the standalone QA and analysis agents 2026-05-19 11:39:20 +03:00
Tres Seaver
70da24b691
docs: add '--search-type' examples to CLI docs 2026-05-18 06:40:41 -04:00
Yiorgis Gozadinos
a98ddc14b8
Replace picture_description.enabled with processing.pictures enum 2026-05-13 16:22:44 +03:00
Yiorgis Gozadinos
6f6ebf27c8
Document s3 storage & monitoring 2026-05-11 11:29:56 +03:00
Yiorgis Gozadinos
ff82d36c2f
add rebuild --descriptions: run VLM over stored picture bytes only 2026-05-05 12:02:46 +03:00
Yiorgis Gozadinos
65d9c74224
expose image-as-query through MCP and the CLI. 2026-05-04 11:46:45 +03:00
Yiorgis Gozadinos
fa87cf79c5
Docs & cl 2026-04-20 10:14:19 +03:00