Commit graph

35 commits

Author SHA1 Message Date
Yiorgis Gozadinos
95fdb46c3a
Check the sandbox deadline on every host call, one error contract
analysis.code_timeout was enforced only in _run_on_loop, the bridge for
database-bound reads; metadata.json, the cached JSONL files and in-code
search() and list_documents() never looked at the clock, and Monty's
watchdog counts compute only. Every host call now checks the deadline
before it starts.

Host errors keep their message for every caller: the masking added for the
MCP server goes, and the sandbox is one path for the capability and the
server alike.
2026-09-07 12:47:28 +03:00
Yiorgis Gozadinos
bae359e3bf
Align the MCP guidance with the analysis instructions and move to Monty 0.0.23
The execute_code description gains the toc.json node shape, the patterns
the evals put into the analysis instructions (one list_documents call to
map a title to an id, files carry no source, toc before search for a known
document, doc_item_refs are items self_refs, chunk ids join files and are
not citations) and the sandbox's read-only, no-network, time-limit and
output facts, which the analysis instructions now state too. The skill
gains pictures as images, image search when offered, and citing chunk
metadata locators. docs/mcp.md lists the interpreter's limits under Code.

pydantic-monty>=0.0.23 brings collections, itertools, functools,
dataclasses, function decorators and str.format into the sandbox; every
layer names the same modules, and a test imports them. Monty now caps host
callbacks per checkout at 1000 by default; the sandbox raises it out of
reach, since the time budgets govern.
2026-09-07 12:02:33 +03:00
Yiorgis Gozadinos
110adf23ee
Make toc.json item_range the line slice it documents
build_toc stored item positions, while the sandbox instructions describe
item_range as a slice into items.jsonl; a gap in positions pulled the next
heading into a section. Ranges are now indices into the position-ordered
items, and get_document_section slices by index too. docs/mcp.md names the
tools that take sources.
2026-09-07 10:27:02 +03:00
Yiorgis Gozadinos
b374d5eb83
Replace ask_question and analyze with execute_code
In Claude Code the client is the model, so the server no longer runs one.
execute_code runs a Python program per call in the analysis sandbox over
the selected documents and returns what it printed; the sandbox is created
and closed per call so Monty's cumulative budget and a frozen mount never
outlive a program. --no-agents goes with the two tools, and format_citations
in haiku.rag.utils goes with its only caller.

The sandbox exposes chunk metadata to code: chunk_meta on search results,
metadata on list_documents rows and in metadata.json, and chunks.jsonl per
document. A host-side failure inside a program, a document read or an
in-code search raising, reaches the program by exception type only and is
logged with its traceback. recovery_hint moves to haiku.rag.sandbox.

Closes #604.
2026-09-07 10:02:42 +03:00
Yiorgis Gozadinos
34180a0fd1
One reference and one placement for a database
DatabaseRef is a name and a location. The configuration places databases
through lancedb.databases alone; with none configured the default is the
entry haiku.rag under storage.data_dir, selectable like any other.
lancedb.uri is removed, and a config carrying it fails to load with the
replacement spelled out. A path passed from Python is valid where the
configuration places nothing and raises AmbiguousDatabaseError beside
lancedb.databases; haiku-rag --db and haiku-ingester --db construct the
scope directly, so a human's override keeps working. Every database
answers to a name, and a database given as a path keeps its own errors.
2026-09-03 15:12:08 +03:00
Yiorgis Gozadinos
afdef92b5b
Finish the comment pass, and escape document fields everywhere Rich renders
`_rich_print_document` escapes uri, title and metadata, the sibling of
the escaped search-result renderer. The remaining comments and
docstrings that narrated rejected alternatives, consequences or history
now state the current invariant. The Sandbox class docstring names the
held connection close() releases, and wrapped docs paragraphs join to
one line.
2026-08-28 15:34:47 +03:00
Yiorgis Gozadinos
09a7076b7e
State what the code does, not what it replaced
Comments and docstrings across the branch narrated rejected
alternatives, consequences and history; each now states the current
contract. Renames test_a_legacy_uri_client_keeps_its_error to
test_an_unnamed_database_keeps_its_error. Documents the Sandbox
connection paths, the citation header's database segment, both
AmbiguousDatabaseError conditions on create_app, and run_inspector's
scope parameter. Doc paragraphs added by the branch in python.md,
storage.md and cli.md are one physical line each.
2026-08-28 15:13:52 +03:00
Yiorgis Gozadinos
d0df382ce8
Release every sandbox resource, whichever teardown fails
Sandbox.close released the pool and the held federated client only when
the monty session's __aexit__ returned. Each release now runs under
suppress(Exception), matching _discard_session and aclose_quietly, so a
raising step neither masks an unwinding error nor leaks the databases a
federated `_opened` holds.
2026-08-28 15:13:28 +03:00
Yiorgis Gozadinos
2bfb661c10
Pin the over-fetch rule, and assert the type a lookup raises
`_fetch_limit` had no test: a text query over-fetches `limit * 10` only with a
reranker, and an image query keeps its vector ranking either way. The sandbox
test asserted `KeyError`, which `UnknownDatabaseError` subclasses, so it could
not tell the contract from a bare one.

`uses_configured_databases` documents a mapping of one as covered; the test
named for it passed no mapping at all. Its `config` parameter is an `AppConfig`.

`test_an_analysis_capability_mounts_the_configured_set` carried a VCR marker and
no cassette, making no HTTP calls.
2026-08-28 14:03:13 +03:00
Yiorgis Gozadinos
b5aa0e7122
Serialize the sandbox's shared connection, not its owners
The lock was applied to an owner as well, so every owner-backed file read queued
behind the capability's tool calls to guard state it does not touch. An owner is
a session of its own and is yielded straight through, which is what the
docstring already claimed.
2026-08-28 08:47:37 +03:00
Yiorgis Gozadinos
c8a9b5df50
Keep the sandbox's connection open for the owners it hands out
`_documents` took its owner clients inside an ephemeral connection and used
them after that connection closed, then stored them for the file reads that
follow, so every standalone multi-database read went through a closed database.

A sandbox covering a set now retains the client it opened until `close()`. One
database has no owners and keeps its connection no longer than the read that
opened it, so a write from elsewhere is still visible to the next read.
2026-08-27 11:40:43 +03:00
Yiorgis Gozadinos
ca2e28559e
Split the multi-database tests by subject
Two files of 1,405 and 814 lines become seven: scope resolution, lifecycle,
search, documents, expansion, citations and capabilities. `_config`, `_seed`
and the rest move to `helpers.py`, importable by the sandbox tests that share
them, and the package points VCR back at `tests/cassettes/multi_db/`.
2026-08-26 13:43:53 +03:00
Yiorgis Gozadinos
71e4e4a40a
Resolve a capability's databases once, into a scope
`resolve_db_path` manufactured the default path whenever `lancedb.databases`
was empty, and `covers_several_databases` read coverage back out of the
configuration, so a capability built without a client opened
`storage.data_dir/haiku.rag.lancedb` instead of what `lancedb.uri` placed.
The entry point resolves a `DatabaseScope` instead: instructions ask it what
it covers and `_ensure_rag` opens it through `HaikuRAG._covering`, so
coverage is decided once rather than encoded in a path and re-derived.
`Sandbox._covering` takes the scope the capability already resolved, beside
the public constructor that takes a path. The factory signatures are
unchanged.
2026-08-26 12:20:21 +03:00
Yiorgis Gozadinos
49580228c2
Read the document's own database in the sandbox listing
`list_documents()` reached into the ownership map for a name the document
already carries. The map is still built, so a document id two databases
claim is still refused before anything mounts. A listing over one named
database now reports that name, as in-code `search()` already does.
2026-08-26 10:33:29 +03:00
Yiorgis Gozadinos
8db447e095
Ask the client what it covers
covers_multiple, source_names, source and reader_for replace the private
state seven modules were reading to work out how many databases they had.
The configured selection is kept intact, so entering a client twice derives
the same database rather than the last derivation.
2026-08-25 14:16:22 +03:00
Yiorgis Gozadinos
fdb5710491
Ask and analyze across several databases
Chunk 2 gave search a configured set to fan out over. ask and analyze
covered one database still: the RAG capability had no way to be told which
databases a question spanned, and the analysis sandbox mounted one
document tree.

The selection travels as sources on EvidenceState, beside the filter it
scopes with, so both capabilities read it the same way. clients_covering
is the one rule that turns a selection into clients, used by search, the
sandbox mount and the cite fallback, so a question scoped to some
databases cannot search, mount or cite another. Citations carry the
database they came from, and format_for_agent names it, so the model can
attribute evidence while it answers rather than only afterwards.

The sandbox keeps one flat /documents/{id}/ namespace and resolves each id
to the client holding it, which rests on ids being UUID4. A database
copied from another breaks that, so an id held twice is refused rather
than resolved to whichever arrived last.

On the CLI, search, ask and analyze cover the configured set and label
each result with its database. Every other command works on one, named
with --database NAME (a name reaches a database behind a URI, which --db
cannot) or --db PATH, and refuses a set it cannot choose from instead of
silently reading the default database. Cold databases open together, so a
first query costs the slowest open rather than their sum.
2026-08-24 10:03:46 +03:00
Yiorgis Gozadinos
d1ad14f44b
Point the limit comments at the right limits
_session_limits still called the session budget the backstop for code that
computes, which stopped being true when the pool gained a request_timeout in the
same commit. The watchdog kills such a call at code_timeout, so it can never
spend a budget of code_timeout * max_executions. The docstring now names the two
per-call limits and claims neither.

The crash test said the discard prevents a RuntimeError escaping execute(). The
handler catches RuntimeError too, so without the discard every later call
returns a failed result instead.

Name MemoryFile's missing write hook as the reason metadata.json takes a reader
and a deny pair. Drop the clause in the CHANGELOG that narrated how the old
overrun accumulated.
2026-07-28 19:11:37 +03:00
Yiorgis Gozadinos
221c90af72
Bound a compute-only call at code_timeout
The pool watchdog counts only the time a worker spends running code, so a read
that blocks the worker never trips it. The margin above code_timeout therefore
guarded a race that cannot happen, and only bought a runaway call 90s where 60s
was configured. Pass code_timeout straight through. The two limits are disjoint:
the watchdog bounds a call that computes, and the read deadline bounds a call
that reads.

Drop the ordering test, which was true for any positive margin. The containment
test no longer sets code_timeout to zero, because that value now also disables
the watchdog and kills the worker before the read guard can refuse. It patches
the guard instead.

Monty 0.0.19 runs a plain class and a class with __enter__ and __exit__. Only
inheritance and metaclasses raise. Say that in the instructions.

MemoryFile is no longer constructed, so drop the import, the annotation, and the
stale references in the sandbox docstring and CLAUDE.md. That CLAUDE.md line
also still claimed a ThreadPoolExecutor, _run_async, and a fresh interpreter per
call.
2026-07-28 19:11:19 +03:00
Yiorgis Gozadinos
d9e4d1e57c
Bound a call that never reads and restore the iteration test
The read deadline only gets control at a read, so code that computes without
reading escaped it. Give the pool a request_timeout above code_timeout. The
watchdog kills the worker, and execute() already replaces a dead session, so a
runaway call fails and the next call recovers. A read refusal keeps the
variables, so it has to win the race whenever code does read.

Restore test_open_file_objects_are_not_iterable. Replacing the neighbouring
write test by text range deleted it, which left the instructions carrying a
prohibition with nothing to signal when monty lifts it.

Reuse the VFS and the pool when a session is replaced, so recovery skips the
document scan. Mount metadata.json with a lambda rather than a factory. Cover
open() in write mode. Fold the crash entry into the pydantic-monty bullet,
because no release shipped the worker without it.
2026-07-28 19:11:19 +03:00
Yiorgis Gozadinos
94befc0dfd
Recover from worker death and deny metadata writes
A crashed worker used to poison the rest of the run. execute() reported the
crash as a failed result, but kept the dead session, and every later call then
raised RuntimeError out of the tool. Clear the session so the next call checks
out a replacement. Keep the session for a syntax or runtime error, which leaves
the worker healthy, and say in the failure text that a restart loses the
variables.

A MemoryFile accepts writes, so metadata.json took them while the other three
document files refused. Mount it through the same read and deny pair. The
write-denial test now covers all four files.
2026-07-28 19:11:19 +03:00
Yiorgis Gozadinos
522959d9b4
Check the code timeout before each document read
The VFS bridge suspends the Monty worker for the length of a read. Monty checks
its duration budget between interpreter steps, so it cannot check while a read
is in flight. Code that reads in a loop overran a 60s budget by minutes. A read
takes about 20ms on a 2789-document corpus, so a full scan spends about 55s in
reads alone.

Check the deadline before each read. Raising from inside the callback answers the
worker's suspension, which keeps the session usable.

Monty also spends max_duration_secs across the session rather than per call, and
the sandbox reuses the session so that variables persist. Budget it for
code_timeout * max_executions. At the old per-call value the first slow call
starved every later one.

Do not wrap feed_run in asyncio.wait_for. Cancelling during pure compute is
clean, but cancelling while a read waits for an answer wedges the session with a
protocol RuntimeError that escapes execute(). A call that computes without
reading stays bounded by the session budget alone.
2026-07-28 19:11:19 +03:00
Yiorgis Gozadinos
feaca386d3
Document that file objects cannot be iterated
Monty 0.0.19 supports open() and with blocks, but a file object is still not
iterable. See pydantic/monty#490, which is still open. The instructions now
state the limitation in three places and give the alternative next to each
one: readlines() or read().split("\n").

Replace chr(10) with "\n" in the prose and in the example. Both work on
0.0.19, and chr(10) implies that the escape is broken.

Add a test that pins the limitation. The test fails when Monty gains
iteration support, which is the signal to relax the instructions.
2026-07-28 19:10:53 +03:00
Yiorgis Gozadinos
5c8df37af1
Support open()/with in the analysis sandbox
Document files can be read with open() and with-blocks (.read(),
.readline(), .readlines()); writes raise PermissionError. File objects
remain non-iterable and the collections module is still unavailable.
2026-07-28 19:10:53 +03:00
Yiorgis Gozadinos
53084d6fdd
Bump pydantic-monty to 0.0.19
0.0.19 runs sandboxed code in a subprocess worker pool (AsyncMonty /
AsyncMontySession) and drops MontyRepl. The sandbox checks out a session,
drives it with feed_run, and closes it to return the worker; close() is
now async. Worker crashes surface as a failed SandboxResult. The document
VFS (OSAccess/CallbackFile/MemoryFile) is unchanged.
2026-07-28 19:10:53 +03:00
Yiorgis Gozadinos
ab88188529
Keep the lazy-read test off the embedder
Rewriting the document through client.update_document re-chunks and
re-embeds, so the test needed an embedding endpoint that CI does not have.
Write the row through the repository instead, matching how the rest of the
file avoids the embedder.
2026-07-27 13:17:05 +03:00
Yiorgis Gozadinos
f96a428ef1
Fix defects found reviewing the coverage work
check_source_accessible narrowed its handler to ValueError, but Path.exists
re-raises errno values outside its ignored set (EACCES, ENAMETOOLONG). Those
were swallowed before and now escaped into the rebuild sweep the guard exists
to protect. Catch OSError too.

Restore the arity guard in _common_path_prefix: without it an empty list
raises from min() and a single label yields a prefix covering the whole path.

Two tests would have hung rather than failed on regression (the vacuum skip
and the protected-wait cancellation); both are now bounded. The import
vacuum test raced against the done-callback that discards the task, and now
spies on the call instead, with a negative control.

Replace assertions that could not fail: blank-query search against an empty
corpus, a batch flush counted against an empty table, a picture description
asserting its own input state, and an FS scheme check with nothing on disk to
resolve. The get_model matrix asserted only the returned type across 26
cases and now pins the per-provider settings. The three batching tests now
count flushes, which revealed embed-only writes through chunks_table.add
rather than _flush_rebuild_batch.
2026-07-27 10:44:32 +03:00
Yiorgis Gozadinos
7c120587f0
Cover sandbox VFS reads, binary part dedup and picture spans 2026-07-26 19:41:09 +03:00
Yiorgis Gozadinos
9deb1f2bd4
replace haiku.skills with native Pydantic AI capabilities 2026-07-24 15:26:17 +03:00
Yiorgis Gozadinos
e59ee56002
Serialize shared-connection access across skill tools and the sandbox 2026-06-05 17:22:11 +03:00
Yiorgis Gozadinos
b47583258e
Run analysis sandbox VFS reads on the calling loop via the skill connection 2026-06-05 16:20:11 +03:00
Yiorgis Gozadinos
7906688bf1
Fix analysis sandbox "Already borrowed" crash on VFS reads 2026-06-05 11:50:19 +03:00
Yiorgis Gozadinos
3858ab905a
toc.json nodes carry chunk_ids; fix cite to accept DB-resolvable chunk_ids 2026-05-20 11:37:35 +03:00
Yiorgis Gozadinos
04eeec77d2
per-doc lazy items/toc cache; index document_items for fast per-doc lookup 2026-05-20 10:08:25 +03:00
Yiorgis Gozadinos
e8c61ad0c6
items.jsonl exposes chunk_ids per row; drops position and tree_depth 2026-05-19 14:20:11 +03:00
Yiorgis Gozadinos
6f95e2bc27
Delete the standalone QA and analysis agents 2026-05-19 11:39:20 +03:00