Commit graph

43 commits

Author SHA1 Message Date
Yiorgis Gozadinos
4967765878
Delete comments that restate the line below them
Sixty-three comments said what the next statement already said: # Connect to
LanceDB above connect_lancedb, # Path object above isinstance(source, Path),
# Get page numbers from provenance above the prov loop, # Clear and populate
results above list_view.clear(). They cost a read and carry nothing.

The line is whether a comment restates one statement or labels a phase. Phase
labels stay: the migrations keep # Create staging table with new schema and
# Copy from staging to final table in batches, each heading ten lines of a
long procedure. So do comments carrying a fact the code cannot: the
merge_insert update-only note on document_meta, why the poller builds sources
eagerly, why create_document_from_source returns a list for directories, that
indexes need training data, the field-group markers in the config models, and
the file:// URL-encoding note in create_document_from_source.

capabilities/ is untouched. Its docstrings sit next to prompt surface, and
changing them needs an eval to back it.

The cassette-recording docs were wrong three ways. They named
tests/test_qa.py::test_qa_anthropic, which no longer exists; they targeted
whole modules, so a rewrite would re-record cassettes for services the
recorder is not running; and they used COHERE_API_KEY where the SDK reads
CO_API_KEY. docs/development.md now names exact tests with -n0, and the keyed
example is test_cohere_reranker, which owns the one cassette recording
api.cohere.com.
2026-08-20 15:22:33 +03:00
Yiorgis Gozadinos
629e1ba4ea
Split the store module by responsibility
engine.py held four unrelated things: what the tables are, how to open a
connection, how to read a database's state, and the Store that coordinates
writes. At 1240 lines the Store's own concerns — locks, migrations, vacuum,
tags — were hard to find among them.

Table records, Arrow schemas, index_specs, ensure_indexes, REQUIRED_TABLES
and query_to_pydantic move to store/schema.py, which imports nothing from
haiku.rag: it describes the tables and never opens or mutates one.

gather_database_info, get_database_stats, DatabaseInfo and its result models
move to store/info.py. Nothing in Store calls them — they are read paths for
the CLI, doctor, inspector and ingester API — so info depends on engine and
not the reverse.

engine.py keeps the Store, ConnectionMode, connect_lancedb, the tag helpers
and the restore-order and retention constants. No re-exports: importers
point at the new modules.

test_app_info_uses_connect_lancedb_for_remote patched
haiku.rag.store.engine.connect_lancedb; gather_database_info now binds that
name in info.py, so the patch targets where the call is looked up.
2026-08-20 12:13:51 +03:00
Yiorgis Gozadinos
11644c7f43
Trim comments, docstrings and docs to what they need to say
Also drops two things that were stale rather than merely verbose: the CLI docs
note for 0.75.0, which was the only release-tagged note in the docs tree while
the CHANGELOG already records that existing databases need `haiku-rag migrate`;
and "(created or corrected)" from the migration log line, left over from the
earlier behaviour that replaced wrong-typed indexes.
2026-08-18 12:38:02 +03:00
Yiorgis Gozadinos
8e93b639bc
Migrate existing databases to the full index set
Adds the 0.75.0 upgrade, which brings a pre-existing database up to the index
set `_init_tables` now creates. It rewrites no table data, so unlike the earlier
data migrations its cost is the index builds alone, each of which reads the
column it indexes.

`ensure_indexes` ensures an index of the declared *type* covers each declared
column, rather than checking that the column is indexed at all. The distinction
is what makes it safe to run against a database of unknown provenance:

- A wrong-typed index no longer satisfies the check. A BTree on `label` covers
  the column while losing the low-cardinality equality lookup the Bitmap is for.
- Nothing is dropped or converted away from. Two index types over one column can
  be deliberate, serving different query shapes, so an index this function did
  not declare survives even on a column it does. The one thing it overwrites is
  an index at LanceDB's default name, `{column}_idx`, which is the name it
  creates itself.
- A column already carrying the declared type is skipped, so a database with the
  full set migrates instantly rather than re-sorting every indexed column.
- Undeclared columns are untouched, so a vector index on `chunks` survives.

It returns the columns it acted on, because a change is not always visible from
outside: adding a Bitmap beside an existing BTree leaves the column indexed
before and after.

The version bump to 0.75.0 is required, not incidental: `_set_initial_version`
stamps a new database with the installed package version, so a migration
numbered above it would be pending the moment the database was created.

`test_client_update_document_replaces_rows_with_bounded_versions` turns
auto_vacuum off. Indexing `documents` means a background vacuum now has an index
to maintain on that table, so `optimize()` writes a version where it previously
had nothing to do, and it landed inside the window the test measures. The
document update itself is still one version, so the bound stays exact.
2026-08-17 16:34:58 +03:00
Yiorgis Gozadinos
aa620aeb60
Bump lancedb to 0.34.0 2026-07-16 12:32:56 +03:00
Yiorgis Gozadinos
a1cf405cae
Rename document_meta identity column document_id to id 2026-07-08 16:32:55 +03:00
Yiorgis Gozadinos
2b2b475279
Collapse docling compression to a single function 2026-06-24 10:43:27 +03:00
Yiorgis Gozadinos
885e7b7ce7
coverage 2026-06-12 10:17:19 +03:00
Yiorgis Gozadinos
df8af54298
rebase from main 2026-06-12 10:17:18 +03:00
Yiorgis Gozadinos
3366a6d383
Split meta document attributes into a document_meta table 2026-06-12 10:17:17 +03:00
Yiorgis Gozadinos
083ff401d5
vacuum db after migration 2026-05-26 11:44:47 +03:00
Yiorgis Gozadinos
ef9cacf981
Harden FS source against symlink escape; surface pool/poller liveness in /health, additional auth tests 2026-05-26 11:44:47 +03:00
Yiorgis Gozadinos
5affe70eae
Cover unparseable-metadata path 2026-05-26 11:44:47 +03:00
Yiorgis Gozadinos
c2f681dd78
constant-time auth, migration short-circuit 2026-05-26 11:44:46 +03:00
Yiorgis Gozadinos
13cbadeb6f
canonical metadata keys: source_revision + content_type, bump to 0.50.0 2026-05-26 11:43:30 +03:00
Yiorgis Gozadinos
d14bf88096
fix migration failures on pre-v0.48.0 document_items schemas 2026-05-21 10:53:21 +03:00
Yiorgis Gozadinos
04eeec77d2
per-doc lazy items/toc cache; index document_items for fast per-doc lookup 2026-05-20 10:08:25 +03:00
Yiorgis Gozadinos
87c551c892
Cover 0.48.0 migration 2026-05-18 16:49:44 +03:00
Yiorgis Gozadinos
68388032be
consolidate #/pictures/ prefix, tighten CHANGELOG, log migration exc_info 2026-05-18 16:49:43 +03:00
Yiorgis Gozadinos
1360303edf
persist docling heading hierarchy on document_items 2026-05-18 16:48:34 +03:00
Yiorgis Gozadinos
04415a9d09
bump pydantic-monty, refresh deps, cap transformers<5 2026-05-18 16:02:55 +03:00
Yiorgis Gozadinos
788fac422e
Clean up migration 2026-05-08 11:52:57 +03:00
Yiorgis Gozadinos
4478b7ce2b
test v0.45.0 migration 2026-05-05 16:06:14 +03:00
Yiorgis Gozadinos
4c9ef81fc6
drop the existing-row-not-found guard from the 0.45.0 picture-bytes migration. 2026-04-30 15:48:03 +03:00
Yiorgis Gozadinos
6a77ce92a9
extract picture bytes to document_items.picture_data at ingest, strip them from the docling_document blob, and add 0.45.0 migration to backfill existing
databases
2026-04-30 11:26:37 +03:00
Yiorgis Gozadinos
dc16f74b58
add picture_data column to document_items 2026-04-30 11:23:29 +03:00
Yiorgis Gozadinos
82fd10e0ee
Migrate LanceDB to native async API
Convert all LanceDB operations from sync calls wrapped in async
functions to the native async API (connect_async, AsyncConnection,
AsyncTable, AsyncQuery). Database I/O no longer blocks the event loop.

- Store and HaikuRAG use async context managers (async with). Store
  initialization is deferred to __aenter__; direct construction
  without async with is no longer supported.
- Index creation uses config objects (FTS, BTree, IvfPq) instead of
  string-based index_type parameter.
- Upgrade callbacks are async.
- HaikuRAG tracks background vacuum tasks and awaits them in __aexit__
  and before destructive rebuild operations to avoid races with
  concurrent table mutations.
- temp_db_path fixture uses pytest's tmp_path for reliable async
  cleanup.
2026-04-24 14:42:52 +03:00
Yiorgis Gozadinos
e2bac1e887
deduplicate escape_sql_string into utils 2026-04-16 12:11:53 +03:00
Yiorgis Gozadinos
364b1bc509
add document_items table for fast context expansion 2026-04-16 12:11:53 +03:00
Yiorgis Gozadinos
3fe953eccb
Minor fixes 2026-04-08 14:04:32 +03:00
Yiorgis Gozadinos
89e2a303e6
migration to split pages and re-compress with zstd 2026-04-08 14:04:32 +03:00
Tres Seaver
53481a7d7a
chore: suppress deprecation wwarning from 'lancedb' 2026-03-12 17:11:58 -04:00
Yiorgis Gozadinos
b4c158ffcf
Fix potential 0.25.0 migration crash 2026-01-22 17:29:26 +02:00
Yiorgis Gozadinos
5464d24483
require explicit migrate command for database migrations 2026-01-19 13:22:09 +02:00
Yiorgis Gozadinos
061095e855
Remove obsolete migrations 2026-01-12 12:07:49 +02:00
Yiorgis Gozadinos
29c682d8eb
Add migration 2026-01-11 11:40:57 +02:00
Yiorgis Gozadinos
c9cb005d07
Use FTS on contextualized text 2025-12-29 14:50:07 +02:00
Yiorgis Gozadinos
4f0f214f26
Remove unecessary tests, add no coverage pragmas where appropriate 2025-12-08 15:56:02 +02:00
Yiorgis Gozadinos
c69b934eac
Incorporate additional docling meta in search(), expand_context() and relevant qa/research agents 2025-12-08 15:54:56 +02:00
Yiorgis Gozadinos
fe4ac530be
DB migration 2025-12-08 15:54:56 +02:00
Yiorgis Gozadinos
78f1d0cef5
No warnings, just info on db upgrade 2025-12-03 08:51:25 +02:00
Yiorgis Gozadinos
3525fae625
Use EmbeddingModelConfig similar to ModelConfig for embeddings 2025-12-02 11:55:31 +02:00
Yiorgis Gozadinos
2f9c907031
Restructure into uv workspace to support minimal and full installations 2025-11-04 17:59:12 +02:00