Merge pull request #39 from ggozad/feat/pydantic

Use pydantic AI
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Yiorgis Gozadinos 2025-08-17 15:04:42 +02:00 committed by GitHub
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@ -8,7 +8,7 @@ Retrieval-Augmented Generation (RAG) library on SQLite.
- **Local SQLite**: No external servers required - **Local SQLite**: No external servers required
- **Multiple embedding providers**: Ollama, VoyageAI, OpenAI - **Multiple embedding providers**: Ollama, VoyageAI, OpenAI
- **Multiple QA providers**: Ollama, OpenAI, Anthropic - **Multiple QA providers**: Any provider/model supported by Pydantic AI
- **Hybrid search**: Vector + full-text search with Reciprocal Rank Fusion - **Hybrid search**: Vector + full-text search with Reciprocal Rank Fusion
- **Reranking**: Default search result reranking with MixedBread AI or Cohere - **Reranking**: Default search result reranking with MixedBread AI or Cohere
- **Question answering**: Built-in QA agents on your documents - **Question answering**: Built-in QA agents on your documents

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@ -44,13 +44,7 @@ VOYAGE_API_KEY="your-api-key"
``` ```
### OpenAI ### OpenAI
If you want to use OpenAI embeddings you will need to install `haiku.rag` with the VoyageAI extras, OpenAI embeddings are included in the default installation. Simply set environment variables:
```bash
uv pip install haiku.rag[openai]
```
and set environment variables.
```bash ```bash
EMBEDDINGS_PROVIDER="openai" EMBEDDINGS_PROVIDER="openai"
@ -61,48 +55,50 @@ OPENAI_API_KEY="your-api-key"
## Question Answering Providers ## Question Answering Providers
Configure which LLM provider to use for question answering. Configure which LLM provider to use for question answering using the `provider:model` format. Any provider and model supported by [Pydantic AI](https://ai.pydantic.dev/models/) can be used.
### Ollama (Default) ### Ollama (Default)
```bash ```bash
QA_PROVIDER="ollama" QA_PROVIDER="ollama:qwen3"
QA_MODEL="qwen3"
OLLAMA_BASE_URL="http://localhost:11434" OLLAMA_BASE_URL="http://localhost:11434"
``` ```
### OpenAI ### OpenAI
For OpenAI QA, you need to install haiku.rag with OpenAI extras: OpenAI QA is included in the default installation. Simply configure:
```bash ```bash
uv pip install haiku.rag[openai] QA_PROVIDER="openai:gpt-4o-mini" # or openai:gpt-4, openai:gpt-3.5-turbo, etc.
```
Then configure:
```bash
QA_PROVIDER="openai"
QA_MODEL="gpt-4o-mini" # or gpt-4, gpt-3.5-turbo, etc.
OPENAI_API_KEY="your-api-key" OPENAI_API_KEY="your-api-key"
``` ```
### Anthropic ### Anthropic
For Anthropic QA, you need to install haiku.rag with Anthropic extras: Anthropic QA is included in the default installation. Simply configure:
```bash ```bash
uv pip install haiku.rag[anthropic] QA_PROVIDER="anthropic:claude-3-5-haiku-20241022" # or anthropic:claude-3-5-sonnet-20241022, etc.
```
Then configure:
```bash
QA_PROVIDER="anthropic"
QA_MODEL="claude-3-5-haiku-20241022" # or claude-3-5-sonnet-20241022, etc.
ANTHROPIC_API_KEY="your-api-key" ANTHROPIC_API_KEY="your-api-key"
``` ```
### Other Providers
Any provider supported by Pydantic AI can be used. Examples include:
```bash
# Google Gemini
QA_PROVIDER="gemini:gemini-1.5-flash"
# Groq
QA_PROVIDER="groq:llama-3.3-70b-versatile"
# Mistral
QA_PROVIDER="mistral:mistral-small-latest"
```
See the [Pydantic AI documentation](https://ai.pydantic.dev/models/) for the complete list of supported providers and models.
## Reranking ## Reranking
Reranking improves search quality by re-ordering the initial search results using specialized models. When enabled, the system retrieves more candidates (3x the requested limit) and then reranks them to return the most relevant results. Reranking improves search quality by re-ordering the initial search results using specialized models. When enabled, the system retrieves more candidates (3x the requested limit) and then reranks them to return the most relevant results.
@ -144,13 +140,7 @@ RERANK_MODEL="mixedbread-ai/mxbai-rerank-base-v2"
### Cohere ### Cohere
For Cohere reranking, install with Cohere extras: Cohere reranking is included in the default installation. Simply configure:
```bash
uv pip install haiku.rag[cohere]
```
Then configure:
```bash ```bash
RERANK_PROVIDER="cohere" RERANK_PROVIDER="cohere"

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@ -6,11 +6,15 @@
uv pip install haiku.rag uv pip install haiku.rag
``` ```
By default, Ollama (with the `mxbai-embed-large` model) is used for embeddings. This includes support for:
- **Ollama** (default embedding provider using `mxbai-embed-large`)
- **OpenAI** (GPT models for QA and embeddings)
- **Anthropic** (Claude models for QA)
- **Cohere** (reranking models)
## Provider-Specific Installation ## Provider-Specific Installation
For other embedding providers, install with extras: For additional embedding providers, install with extras:
### VoyageAI ### VoyageAI
@ -18,16 +22,10 @@ For other embedding providers, install with extras:
uv pip install haiku.rag[voyageai] uv pip install haiku.rag[voyageai]
``` ```
### OpenAI ### MixedBread AI Reranking
```bash ```bash
uv pip install haiku.rag[openai] uv pip install haiku.rag[mxbai]
```
### Anthropic
```bash
uv pip install haiku.rag[anthropic]
``` ```
## Requirements ## Requirements

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@ -27,6 +27,7 @@ dependencies = [
"httpx>=0.28.1", "httpx>=0.28.1",
"ollama>=0.5.3", "ollama>=0.5.3",
"pydantic>=2.11.7", "pydantic>=2.11.7",
"pydantic-ai>=0.7.2",
"python-dotenv>=1.1.0", "python-dotenv>=1.1.0",
"rich>=14.0.0", "rich>=14.0.0",
"sqlite-vec>=0.1.6", "sqlite-vec>=0.1.6",
@ -37,9 +38,6 @@ dependencies = [
[project.optional-dependencies] [project.optional-dependencies]
voyageai = ["voyageai>=0.3.2"] voyageai = ["voyageai>=0.3.2"]
openai = ["openai>=1.0.0"]
anthropic = ["anthropic>=0.56.0"]
cohere = ["cohere>=5.16.1"]
mxbai = ["mxbai-rerank>=0.1.6"] mxbai = ["mxbai-rerank>=0.1.6"]
[project.scripts] [project.scripts]

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@ -22,8 +22,7 @@ class AppConfig(BaseModel):
RERANK_PROVIDER: str = "ollama" RERANK_PROVIDER: str = "ollama"
RERANK_MODEL: str = "qwen3" RERANK_MODEL: str = "qwen3"
QA_PROVIDER: str = "ollama" QA_PROVIDER: str = "ollama:qwen3"
QA_MODEL: str = "qwen3"
CHUNK_SIZE: int = 256 CHUNK_SIZE: int = 256
CONTEXT_CHUNK_RADIUS: int = 0 CONTEXT_CHUNK_RADIUS: int = 0

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@ -17,20 +17,14 @@ def get_embedder() -> EmbedderBase:
except ImportError: except ImportError:
raise ImportError( raise ImportError(
"VoyageAI embedder requires the 'voyageai' package. " "VoyageAI embedder requires the 'voyageai' package. "
"Please install haiku.rag with the 'voyageai' extra:" "Please install haiku.rag with the 'voyageai' extra: "
"uv pip install haiku.rag[voyageai]" "uv pip install haiku.rag[voyageai]"
) )
return VoyageAIEmbedder(Config.EMBEDDINGS_MODEL, Config.EMBEDDINGS_VECTOR_DIM) return VoyageAIEmbedder(Config.EMBEDDINGS_MODEL, Config.EMBEDDINGS_VECTOR_DIM)
if Config.EMBEDDINGS_PROVIDER == "openai": if Config.EMBEDDINGS_PROVIDER == "openai":
try: from haiku.rag.embeddings.openai import Embedder as OpenAIEmbedder
from haiku.rag.embeddings.openai import Embedder as OpenAIEmbedder
except ImportError:
raise ImportError(
"OpenAI embedder requires the 'openai' package. "
"Please install haiku.rag with the 'openai' extra:"
"uv pip install haiku.rag[openai]"
)
return OpenAIEmbedder(Config.EMBEDDINGS_MODEL, Config.EMBEDDINGS_VECTOR_DIM) return OpenAIEmbedder(Config.EMBEDDINGS_MODEL, Config.EMBEDDINGS_VECTOR_DIM)
raise ValueError(f"Unsupported embedding provider: {Config.EMBEDDINGS_PROVIDER}") raise ValueError(f"Unsupported embedding provider: {Config.EMBEDDINGS_PROVIDER}")

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@ -1,16 +1,13 @@
try: from openai import AsyncOpenAI
from openai import AsyncOpenAI
from haiku.rag.embeddings.base import EmbedderBase from haiku.rag.embeddings.base import EmbedderBase
class Embedder(EmbedderBase):
async def embed(self, text: str) -> list[float]:
client = AsyncOpenAI()
response = await client.embeddings.create(
model=self._model,
input=text,
)
return response.data[0].embedding
except ImportError: class Embedder(EmbedderBase):
pass async def embed(self, text: str) -> list[float]:
client = AsyncOpenAI()
response = await client.embeddings.create(
model=self._model,
input=text,
)
return response.data[0].embedding

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@ -1,44 +1,13 @@
from haiku.rag.client import HaikuRAG from haiku.rag.client import HaikuRAG
from haiku.rag.config import Config from haiku.rag.config import Config
from haiku.rag.qa.base import QuestionAnswerAgentBase from haiku.rag.qa.agent import QuestionAnswerAgent
from haiku.rag.qa.ollama import QuestionAnswerOllamaAgent
def get_qa_agent( def get_qa_agent(client: HaikuRAG, use_citations: bool = False) -> QuestionAnswerAgent:
client: HaikuRAG, model: str = "", use_citations: bool = False provider_model = Config.QA_PROVIDER
) -> QuestionAnswerAgentBase:
"""
Factory function to get the appropriate QA agent based on the configuration.
"""
if Config.QA_PROVIDER == "ollama":
return QuestionAnswerOllamaAgent(
client, model or Config.QA_MODEL, use_citations
)
if Config.QA_PROVIDER == "openai": return QuestionAnswerAgent(
try: client=client,
from haiku.rag.qa.openai import QuestionAnswerOpenAIAgent provider_model=provider_model,
except ImportError: use_citations=use_citations,
raise ImportError( )
"OpenAI QA agent requires the 'openai' package. "
"Please install haiku.rag with the 'openai' extra:"
"uv pip install haiku.rag[openai]"
)
return QuestionAnswerOpenAIAgent(
client, model or Config.QA_MODEL, use_citations
)
if Config.QA_PROVIDER == "anthropic":
try:
from haiku.rag.qa.anthropic import QuestionAnswerAnthropicAgent
except ImportError:
raise ImportError(
"Anthropic QA agent requires the 'anthropic' package. "
"Please install haiku.rag with the 'anthropic' extra:"
"uv pip install haiku.rag[anthropic]"
)
return QuestionAnswerAnthropicAgent(
client, model or Config.QA_MODEL, use_citations
)
raise ValueError(f"Unsupported QA provider: {Config.QA_PROVIDER}")

80
src/haiku/rag/qa/agent.py Normal file
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@ -0,0 +1,80 @@
from pydantic import BaseModel, Field
from pydantic_ai import Agent, RunContext
from pydantic_ai.models.openai import OpenAIModel
from pydantic_ai.providers.ollama import OllamaProvider
from haiku.rag.client import HaikuRAG
from haiku.rag.config import Config
from haiku.rag.qa.prompts import SYSTEM_PROMPT, SYSTEM_PROMPT_WITH_CITATIONS
class SearchResult(BaseModel):
content: str = Field(description="The document text content")
score: float = Field(description="Relevance score (higher is more relevant)")
document_uri: str = Field(description="Source URI/path of the document")
class Dependencies(BaseModel):
model_config = {"arbitrary_types_allowed": True}
client: HaikuRAG
class QuestionAnswerAgent:
def __init__(
self,
client: HaikuRAG,
provider_model: str,
use_citations: bool = False,
q: float = 0.0,
):
self._client = client
system_prompt = SYSTEM_PROMPT_WITH_CITATIONS if use_citations else SYSTEM_PROMPT
model_obj = self._get_model(provider_model)
self._agent = Agent(
model=model_obj,
deps_type=Dependencies,
system_prompt=system_prompt,
)
@self._agent.tool
async def search_documents(
ctx: RunContext[Dependencies],
query: str,
limit: int = 3,
) -> list[SearchResult]:
"""Search the knowledge base for relevant documents."""
search_results = await ctx.deps.client.search(query, limit=limit)
expanded_results = await ctx.deps.client.expand_context(search_results)
return [
SearchResult(
content=chunk.content,
score=score,
document_uri=chunk.document_uri or "",
)
for chunk, score in expanded_results
]
def _get_model(self, provider_model: str):
"""Get the appropriate model object for the provider:model format."""
if ":" not in provider_model:
raise ValueError(f"Invalid provider:model format: {provider_model}")
provider, model = provider_model.split(":", 1)
if provider == "ollama":
return OpenAIModel(
model_name=model,
provider=OllamaProvider(base_url=f"{Config.OLLAMA_BASE_URL}/v1"),
)
else:
# For other providers, use the provider:model string directly
return provider_model
async def answer(self, question: str) -> str:
"""Answer a question using the RAG system."""
deps = Dependencies(client=self._client)
result = await self._agent.run(question, deps=deps)
return result.output

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@ -1,108 +0,0 @@
from collections.abc import Sequence
try:
from anthropic import AsyncAnthropic # type: ignore
from anthropic.types import ( # type: ignore
MessageParam,
TextBlock,
ToolParam,
ToolUseBlock,
)
from haiku.rag.client import HaikuRAG
from haiku.rag.qa.base import QuestionAnswerAgentBase
class QuestionAnswerAnthropicAgent(QuestionAnswerAgentBase):
def __init__(
self,
client: HaikuRAG,
model: str = "claude-3-5-haiku-20241022",
use_citations: bool = False,
):
super().__init__(client, model or self._model, use_citations)
self.tools: Sequence[ToolParam] = [
ToolParam(
name="search_documents",
description="Search the knowledge base for relevant documents. Returns a JSON array with content, score, and document_uri for each result.",
input_schema={
"type": "object",
"properties": {
"query": {
"type": "string",
"description": "The search query to find relevant documents",
},
"limit": {
"type": "integer",
"description": "Maximum number of results to return",
"default": 3,
},
},
"required": ["query"],
},
)
]
async def answer(self, question: str) -> str:
anthropic_client = AsyncAnthropic()
messages: list[MessageParam] = [{"role": "user", "content": question}]
max_rounds = 5 # Prevent infinite loops
for _ in range(max_rounds):
response = await anthropic_client.messages.create(
model=self._model,
max_tokens=4096,
system=self._system_prompt,
messages=messages,
tools=self.tools,
temperature=0.0,
)
if response.stop_reason == "tool_use":
messages.append({"role": "assistant", "content": response.content})
# Process tool calls
tool_results = []
for content_block in response.content:
if isinstance(content_block, ToolUseBlock):
if content_block.name == "search_documents":
args = content_block.input
query = (
args.get("query", question)
if isinstance(args, dict)
else question
)
limit = (
int(args.get("limit", 3))
if isinstance(args, dict)
else 3
)
context = await self._search_and_expand(
query, limit=limit
)
tool_results.append(
{
"type": "tool_result",
"tool_use_id": content_block.id,
"content": context,
}
)
if tool_results:
messages.append({"role": "user", "content": tool_results})
else:
# No tool use, return the response
if response.content:
first_content = response.content[0]
if isinstance(first_content, TextBlock):
return first_content.text
return ""
# If we've exhausted max rounds, return empty string
return ""
except ImportError:
pass

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@ -1,89 +0,0 @@
import json
from haiku.rag.client import HaikuRAG
from haiku.rag.qa.prompts import SYSTEM_PROMPT, SYSTEM_PROMPT_WITH_CITATIONS
class QuestionAnswerAgentBase:
_model: str = ""
_system_prompt: str = SYSTEM_PROMPT
def __init__(self, client: HaikuRAG, model: str = "", use_citations: bool = False):
self._model = model
self._client = client
self._system_prompt = (
SYSTEM_PROMPT_WITH_CITATIONS if use_citations else SYSTEM_PROMPT
)
async def answer(self, question: str) -> str:
raise NotImplementedError(
"QABase is an abstract class. Please implement the answer method in a subclass."
)
async def _search_and_expand(self, query: str, limit: int = 3) -> str:
"""Search for documents and expand context, then format as JSON"""
search_results = await self._client.search(query, limit=limit)
expanded_results = await self._client.expand_context(search_results)
return self._format_search_results(expanded_results)
def _format_search_results(self, search_results) -> str:
"""Format search results as JSON list of {content, score, document_uri}"""
formatted_results = []
for chunk, score in search_results:
formatted_results.append(
{
"content": chunk.content,
"score": score,
"document_uri": chunk.document_uri,
}
)
return json.dumps(formatted_results, indent=2)
tools = [
{
"type": "function",
"function": {
"name": "search_documents",
"description": "Search the knowledge base for relevant documents. Returns a JSON array of search results.",
"parameters": {
"type": "object",
"properties": {
"query": {
"type": "string",
"description": "The search query to find relevant documents",
},
"limit": {
"type": "integer",
"description": "Maximum number of results to return",
"default": 3,
},
},
"required": ["query"],
},
"returns": {
"type": "string",
"description": "JSON array of search results",
"schema": {
"type": "array",
"items": {
"type": "object",
"properties": {
"content": {
"type": "string",
"description": "The document text content",
},
"score": {
"type": "number",
"description": "Relevance score (higher is more relevant)",
},
"document_uri": {
"type": "string",
"description": "Source URI/path of the document",
},
},
},
},
},
},
}
]

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@ -1,60 +0,0 @@
from ollama import AsyncClient
from haiku.rag.client import HaikuRAG
from haiku.rag.config import Config
from haiku.rag.qa.base import QuestionAnswerAgentBase
OLLAMA_OPTIONS = {"temperature": 0.0, "seed": 42, "num_ctx": 16384}
class QuestionAnswerOllamaAgent(QuestionAnswerAgentBase):
def __init__(
self,
client: HaikuRAG,
model: str = Config.QA_MODEL,
use_citations: bool = False,
):
super().__init__(client, model or self._model, use_citations)
async def answer(self, question: str) -> str:
ollama_client = AsyncClient(host=Config.OLLAMA_BASE_URL)
messages = [
{"role": "system", "content": self._system_prompt},
{"role": "user", "content": question},
]
max_rounds = 5 # Prevent infinite loops
for _ in range(max_rounds):
response = await ollama_client.chat(
model=self._model,
messages=messages,
tools=self.tools,
options=OLLAMA_OPTIONS,
think=False,
)
if response.get("message", {}).get("tool_calls"):
messages.append(response["message"])
for tool_call in response["message"]["tool_calls"]:
if tool_call["function"]["name"] == "search_documents":
args = tool_call["function"]["arguments"]
query = args.get("query", question)
limit = int(args.get("limit", 3))
context = await self._search_and_expand(query, limit=limit)
messages.append(
{
"role": "tool",
"content": context,
"tool_call_id": tool_call.get("id", "search_tool"),
}
)
else:
# No tool calls, return the response
return response["message"]["content"]
# If we've exhausted max rounds, return empty string
return ""

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@ -1,97 +0,0 @@
from collections.abc import Sequence
try:
from openai import AsyncOpenAI # type: ignore
from openai.types.chat import ( # type: ignore
ChatCompletionAssistantMessageParam,
ChatCompletionMessageParam,
ChatCompletionSystemMessageParam,
ChatCompletionToolMessageParam,
ChatCompletionUserMessageParam,
)
from openai.types.chat.chat_completion_tool_param import ( # type: ignore
ChatCompletionToolParam,
)
from haiku.rag.client import HaikuRAG
from haiku.rag.qa.base import QuestionAnswerAgentBase
class QuestionAnswerOpenAIAgent(QuestionAnswerAgentBase):
def __init__(
self,
client: HaikuRAG,
model: str = "gpt-4o-mini",
use_citations: bool = False,
):
super().__init__(client, model or self._model, use_citations)
self.tools: Sequence[ChatCompletionToolParam] = [
ChatCompletionToolParam(tool) for tool in self.tools
]
async def answer(self, question: str) -> str:
openai_client = AsyncOpenAI()
messages: list[ChatCompletionMessageParam] = [
ChatCompletionSystemMessageParam(
role="system", content=self._system_prompt
),
ChatCompletionUserMessageParam(role="user", content=question),
]
max_rounds = 5 # Prevent infinite loops
for _ in range(max_rounds):
response = await openai_client.chat.completions.create(
model=self._model,
messages=messages,
tools=self.tools,
temperature=0.0,
)
response_message = response.choices[0].message
if response_message.tool_calls:
messages.append(
ChatCompletionAssistantMessageParam(
role="assistant",
content=response_message.content,
tool_calls=[
{
"id": tc.id,
"type": "function",
"function": {
"name": tc.function.name,
"arguments": tc.function.arguments,
},
}
for tc in response_message.tool_calls
],
)
)
for tool_call in response_message.tool_calls:
if tool_call.function.name == "search_documents":
import json
args = json.loads(tool_call.function.arguments)
query = args.get("query", question)
limit = int(args.get("limit", 3))
context = await self._search_and_expand(query, limit=limit)
messages.append(
ChatCompletionToolMessageParam(
role="tool",
content=context,
tool_call_id=tool_call.id,
)
)
else:
# No tool calls, return the response
return response_message.content or ""
# If we've exhausted max rounds, return empty string
return ""
except ImportError:
pass

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@ -18,6 +18,7 @@ Guidelines:
- Stick to the answer, do not ellaborate or provide context unless explicitly asked for it. - Stick to the answer, do not ellaborate or provide context unless explicitly asked for it.
Be concise, and always maintain accuracy over completeness. Prefer short, direct answers that are well-supported by the documents. Be concise, and always maintain accuracy over completeness. Prefer short, direct answers that are well-supported by the documents.
/no_think
""" """
SYSTEM_PROMPT_WITH_CITATIONS = """ SYSTEM_PROMPT_WITH_CITATIONS = """
@ -55,4 +56,5 @@ Citations:
- /path/to/document2.pdf: "The manual provides guidance on military procedures and..." - /path/to/document2.pdf: "The manual provides guidance on military procedures and..."
Be concise, and always maintain accuracy over completeness. Prefer short, direct answers that are well-supported by the documents. Be concise, and always maintain accuracy over completeness. Prefer short, direct answers that are well-supported by the documents.
/no_think
""" """

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@ -1,14 +1,12 @@
import json
from ollama import AsyncClient
from pydantic import BaseModel from pydantic import BaseModel
from pydantic_ai import Agent
from pydantic_ai.models.openai import OpenAIModel
from pydantic_ai.providers.ollama import OllamaProvider
from haiku.rag.config import Config from haiku.rag.config import Config
from haiku.rag.reranking.base import RerankerBase from haiku.rag.reranking.base import RerankerBase
from haiku.rag.store.models.chunk import Chunk from haiku.rag.store.models.chunk import Chunk
OLLAMA_OPTIONS = {"temperature": 0.0, "seed": 42, "num_ctx": 16384}
class RerankResult(BaseModel): class RerankResult(BaseModel):
"""Individual rerank result with index and relevance score.""" """Individual rerank result with index and relevance score."""
@ -26,7 +24,28 @@ class RerankResponse(BaseModel):
class OllamaReranker(RerankerBase): class OllamaReranker(RerankerBase):
def __init__(self, model: str = Config.RERANK_MODEL): def __init__(self, model: str = Config.RERANK_MODEL):
self._model = model self._model = model
self._client = AsyncClient(host=Config.OLLAMA_BASE_URL)
# Create the reranking prompt
system_prompt = """You are a document reranking assistant. Given a query and a list of document chunks, you must rank them by relevance to the query.
Return your response as a JSON object with a "results" array. Each result should have:
- "index": the original index of the document (integer)
- "relevance_score": a score between 0.0 and 1.0 indicating relevance (float, where 1.0 is most relevant)
Only return the top documents up to the requested limit, ordered by decreasing relevance score.
/no_think
"""
model_obj = OpenAIModel(
model_name=model,
provider=OllamaProvider(base_url=f"{Config.OLLAMA_BASE_URL}/v1"),
)
self._agent = Agent(
model=model_obj,
output_type=RerankResponse,
system_prompt=system_prompt,
)
async def rerank( async def rerank(
self, query: str, chunks: list[Chunk], top_n: int = 10 self, query: str, chunks: list[Chunk], top_n: int = 10
@ -38,15 +57,6 @@ class OllamaReranker(RerankerBase):
for i, chunk in enumerate(chunks): for i, chunk in enumerate(chunks):
documents.append({"index": i, "content": chunk.content}) documents.append({"index": i, "content": chunk.content})
# Create the prompt for reranking
system_prompt = """You are a document reranking assistant. Given a query and a list of document chunks, you must rank them by relevance to the query.
Return your response as a JSON object with a "results" array. Each result should have:
- "index": the original index of the document (integer)
- "relevance_score": a score between 0.0 and 1.0 indicating relevance (float, where 1.0 is most relevant)
Only return the top documents up to the requested limit, ordered by decreasing relevance score."""
documents_text = "" documents_text = ""
for doc in documents: for doc in documents:
documents_text += f"Index {doc['index']}: {doc['content']}\n\n" documents_text += f"Index {doc['index']}: {doc['content']}\n\n"
@ -56,27 +66,14 @@ Only return the top documents up to the requested limit, ordered by decreasing r
Documents to rerank: Documents to rerank:
{documents_text.strip()} {documents_text.strip()}
Please rank these documents by relevance to the query and return the top {top_n} results as JSON.""" Rank these documents by relevance to the query and return the top {top_n} results as JSON."""
messages = [
{"role": "system", "content": system_prompt},
{"role": "user", "content": user_prompt},
]
try: try:
response = await self._client.chat( result = await self._agent.run(user_prompt)
model=self._model,
messages=messages,
format=RerankResponse.model_json_schema(),
options=OLLAMA_OPTIONS,
)
content = response["message"]["content"]
parsed_response = RerankResponse.model_validate(json.loads(content))
return [ return [
(chunks[result.index], result.relevance_score) (chunks[result_item.index], result_item.relevance_score)
for result in parsed_response.results[:top_n] for result_item in result.output.results[:top_n]
] ]
except Exception: except Exception:

View file

@ -1,21 +1,67 @@
import json
from ollama import AsyncClient
from pydantic import BaseModel from pydantic import BaseModel
from pydantic_ai import Agent
from pydantic_ai.models.openai import OpenAIModel
from pydantic_ai.providers.ollama import OllamaProvider
from haiku.rag.config import Config from haiku.rag.config import Config
# Shared rubric/prompt for answer equivalence evaluation
ANSWER_EQUIVALENCE_RUBRIC = """You are evaluating whether two answers to the same question are semantically equivalent.
EVALUATION CRITERIA:
Rate as EQUIVALENT if:
Both answers contain the same core factual information
Both directly address the question asked
The key claims and conclusions are consistent
Any additional detail in one answer doesn't contradict the other
Rate as NOT EQUIVALENT if:
Factual contradictions exist between the answers
One answer fails to address the core question
Key information is missing that changes the meaning
The answers lead to different conclusions or implications
GUIDELINES:
- Ignore minor differences in phrasing, style, or formatting
- Focus on semantic meaning rather than exact wording
- Consider both answers correct if they convey the same essential information
- Be tolerant of different levels of detail if the core answer is preserved
- Evaluate based on what a person asking this question would need to know
/no_think"""
class LLMJudgeResponseSchema(BaseModel): class LLMJudgeResponseSchema(BaseModel):
equivalent: bool equivalent: bool
class LLMJudge: class LLMJudge:
"""LLM-as-judge for evaluating answer equivalence using Ollama.""" """LLM-as-judge for evaluating answer equivalence using Pydantic AI."""
def __init__(self, model: str = Config.QA_MODEL): def __init__(self, provider_model: str = Config.QA_PROVIDER):
self.model = model self.provider_model = provider_model
self.client = AsyncClient(host=Config.OLLAMA_BASE_URL)
# Parse provider:model format
if ":" not in provider_model:
raise ValueError(f"Invalid provider:model format: {provider_model}")
provider, model = provider_model.split(":", 1)
if provider == "ollama":
# Create Ollama model
ollama_model = OpenAIModel(
model_name=model,
provider=OllamaProvider(base_url=f"{Config.OLLAMA_BASE_URL}/v1"),
)
else:
# For other providers, use the provider:model string directly
ollama_model = provider_model
# Create Pydantic AI agent
self._agent = Agent(
model=ollama_model,
output_type=LLMJudgeResponseSchema,
system_prompt=ANSWER_EQUIVALENCE_RUBRIC,
)
async def judge_answers( async def judge_answers(
self, question: str, answer: str, expected_answer: str self, question: str, answer: str, expected_answer: str
@ -29,53 +75,14 @@ class LLMJudge:
expected_answer: The reference/expected answer expected_answer: The reference/expected answer
Returns: Returns:
Dictionary with judgment result: bool indicating if answers are equivalent
- equivalent: bool indicating if answers are equivalent
- explanation: str explaining the reasoning
- score: str rating from 1-5
""" """
prompt = f"""You are an expert evaluator determining whether two answers to the same question are semantically equivalent. prompt = f"""QUESTION: {question}
QUESTION: {question}
GENERATED ANSWER: {answer} GENERATED ANSWER: {answer}
EXPECTED ANSWER: {expected_answer} EXPECTED ANSWER: {expected_answer}"""
EVALUATION CRITERIA: result = await self._agent.run(prompt)
Rate as EQUIVALENT (true) if: return result.output.equivalent
Both answers contain the same core factual information
Both directly address the question asked
The key claims and conclusions are consistent
Any additional detail in one answer doesn't contradict the other
Rate as NOT EQUIVALENT (false) if:
Factual contradictions exist between the answers
One answer fails to address the core question
Key information is missing from one answer that changes the meaning
The answers lead to different conclusions or implications
GUIDELINES:
- Ignore minor differences in phrasing, style, or formatting
- Focus on semantic meaning rather than exact wording
- Consider both answers correct if they convey the same essential information
- Be tolerant of different levels of detail if the core answer is preserved
- Evaluate based on what a person asking this question would need to know
Respond with JSON containing only: {{"equivalent": true}} or {{"equivalent": false}}"""
response = await self.client.chat(
model=self.model,
messages=[{"role": "user", "content": prompt}],
format=LLMJudgeResponseSchema.model_json_schema(),
think=False,
)
answer = response["message"]["content"].strip()
try:
res = json.loads(answer)
assert "equivalent" in res, "Response must contain 'equivalent' key"
return res["equivalent"]
except json.JSONDecodeError:
assert False, "Response is not valid JSON"

View file

@ -1,19 +1,26 @@
import numpy as np import numpy as np
import pytest import pytest
from haiku.rag.embeddings import get_embedder from haiku.rag.config import Config
from haiku.rag.embeddings.ollama import Embedder as OllamaEmbedder
from haiku.rag.embeddings.openai import Embedder as OpenAIEmbedder
OPENAI_AVAILABLE = bool(Config.OPENAI_API_KEY)
VOYAGEAI_AVAILABLE = bool(Config.VOYAGE_API_KEY)
# Calculate cosine similarity
def similarities(embeddings, test_embedding):
return [
np.dot(embedding, test_embedding)
/ (np.linalg.norm(embedding) * np.linalg.norm(test_embedding))
for embedding in embeddings
]
@pytest.mark.asyncio @pytest.mark.asyncio
async def test_embedder(): async def test_ollama_embedder():
embedder = get_embedder() embedder = OllamaEmbedder("mxbai-embed-large", 1024)
embedding = await embedder.embed("hello world")
assert len(embedding) == embedder._vector_dim
@pytest.mark.asyncio
async def test_similarity():
embedder = get_embedder()
phrases = [ phrases = [
"I enjoy eating great food.", "I enjoy eating great food.",
"Python is my favorite programming language.", "Python is my favorite programming language.",
@ -21,14 +28,6 @@ async def test_similarity():
] ]
embeddings = [np.array(await embedder.embed(phrase)) for phrase in phrases] embeddings = [np.array(await embedder.embed(phrase)) for phrase in phrases]
# Calculate cosine similarity
def similarities(embeddings, test_embedding):
return [
np.dot(embedding, test_embedding)
/ (np.linalg.norm(embedding) * np.linalg.norm(test_embedding))
for embedding in embeddings
]
test_phrase = "I am going for a camping trip." test_phrase = "I am going for a camping trip."
test_embedding = await embedder.embed(test_phrase) test_embedding = await embedder.embed(test_phrase)
@ -49,80 +48,66 @@ async def test_similarity():
@pytest.mark.asyncio @pytest.mark.asyncio
async def test_openai_embedder(monkeypatch): @pytest.mark.skipif(not OPENAI_AVAILABLE, reason="OpenAI API key not available")
monkeypatch.setenv("EMBEDDINGS_PROVIDER", "openai") async def test_openai_embedder():
monkeypatch.setenv("EMBEDDINGS_MODEL", "text-embedding-3-small") embedder = OpenAIEmbedder("text-embedding-3-small", 1536)
phrases = [
"I enjoy eating great food.",
"Python is my favorite programming language.",
"I love to travel and see new places.",
]
embeddings = [np.array(await embedder.embed(phrase)) for phrase in phrases]
try: test_phrase = "I am going for a camping trip."
from haiku.rag.embeddings.openai import Embedder as OpenAIEmbedder test_embedding = await embedder.embed(test_phrase)
embedder = OpenAIEmbedder("text-embedding-3-small", 1536) sims = similarities(embeddings, test_embedding)
assert max(sims) == sims[2]
# Mock the OpenAI client test_phrase = "When is dinner ready?"
class MockEmbeddingData: test_embedding = await embedder.embed(test_phrase)
def __init__(self, embedding):
self.embedding = embedding
class MockResponse: sims = similarities(embeddings, test_embedding)
def __init__(self, embedding): assert max(sims) == sims[0]
self.data = [MockEmbeddingData(embedding)]
class MockAsyncOpenAI: test_phrase = "I work as a software developer."
class MockEmbeddings: test_embedding = await embedder.embed(test_phrase)
async def create(self, model, input):
return MockResponse([0.1] * 1536)
def __init__(self): sims = similarities(embeddings, test_embedding)
self.embeddings = self.MockEmbeddings() assert max(sims) == sims[1]
# Patch the AsyncOpenAI import
import haiku.rag.embeddings.openai
original_client = haiku.rag.embeddings.openai.AsyncOpenAI
haiku.rag.embeddings.openai.AsyncOpenAI = MockAsyncOpenAI
try:
embedding = await embedder.embed("test text")
assert len(embedding) == 1536
assert all(isinstance(x, float) for x in embedding)
finally:
haiku.rag.embeddings.openai.AsyncOpenAI = original_client
except ImportError:
pytest.skip("OpenAI package not installed")
@pytest.mark.asyncio @pytest.mark.asyncio
async def test_voyageai_embedder(monkeypatch): @pytest.mark.skipif(not VOYAGEAI_AVAILABLE, reason="VoyageAI API key not available")
monkeypatch.setenv("EMBEDDINGS_PROVIDER", "voyageai") async def test_voyageai_embedder():
monkeypatch.setenv("EMBEDDINGS_MODEL", "voyage-3.5")
try: try:
from haiku.rag.embeddings.voyageai import Embedder as VoyageAIEmbedder from haiku.rag.embeddings.voyageai import Embedder as VoyageAIEmbedder
embedder = VoyageAIEmbedder("voyage-3.5", 1024) embedder = VoyageAIEmbedder("voyage-3.5", 1024)
phrases = [
"I enjoy eating great food.",
"Python is my favorite programming language.",
"I love to travel and see new places.",
]
embeddings = [np.array(await embedder.embed(phrase)) for phrase in phrases]
# Mock the VoyageAI client test_phrase = "I am going for a camping trip."
class MockEmbeddings: test_embedding = await embedder.embed(test_phrase)
def __init__(self, embeddings):
self.embeddings = embeddings
class MockClient: sims = similarities(embeddings, test_embedding)
def embed(self, texts, model, output_dtype): assert max(sims) == sims[2]
return MockEmbeddings([[0.1] * 1024])
# Patch the Client import test_phrase = "When is dinner ready?"
import haiku.rag.embeddings.voyageai test_embedding = await embedder.embed(test_phrase)
original_client = haiku.rag.embeddings.voyageai.Client sims = similarities(embeddings, test_embedding)
haiku.rag.embeddings.voyageai.Client = MockClient assert max(sims) == sims[0]
try: test_phrase = "I work as a software developer."
embedding = await embedder.embed("test text") test_embedding = await embedder.embed(test_phrase)
assert len(embedding) == 1024
assert all(isinstance(x, float) for x in embedding) sims = similarities(embeddings, test_embedding)
finally: assert max(sims) == sims[1]
haiku.rag.embeddings.voyageai.Client = original_client
except ImportError: except ImportError:
pytest.skip("VoyageAI package not installed") pytest.skip("VoyageAI package not installed")

View file

@ -2,32 +2,20 @@ import pytest
from datasets import Dataset from datasets import Dataset
from haiku.rag.client import HaikuRAG from haiku.rag.client import HaikuRAG
from haiku.rag.qa.ollama import QuestionAnswerOllamaAgent from haiku.rag.config import Config
from haiku.rag.qa.agent import QuestionAnswerAgent
try:
from haiku.rag.qa.openai import QuestionAnswerOpenAIAgent
OPENAI_AVAILABLE = True
except ImportError:
QuestionAnswerOpenAIAgent = None
OPENAI_AVAILABLE = False
try:
from haiku.rag.qa.anthropic import QuestionAnswerAnthropicAgent
ANTHROPIC_AVAILABLE = True
except ImportError:
QuestionAnswerAnthropicAgent = None
ANTHROPIC_AVAILABLE = False
from .llm_judge import LLMJudge from .llm_judge import LLMJudge
OPENAI_AVAILABLE = bool(Config.OPENAI_API_KEY)
ANTHROPIC_AVAILABLE = bool(Config.ANTHROPIC_API_KEY)
@pytest.mark.asyncio @pytest.mark.asyncio
async def test_qa_ollama(qa_corpus: Dataset): async def test_qa_ollama(qa_corpus: Dataset):
"""Test QA with actual question from the dataset using LLM judge.""" """Test Ollama QA with LLM judge."""
client = HaikuRAG(":memory:") client = HaikuRAG(":memory:")
qa = QuestionAnswerOllamaAgent(client) qa = QuestionAnswerAgent(client, provider_model="ollama:qwen3")
llm_judge = LLMJudge() llm_judge = LLMJudge()
doc = qa_corpus[1] doc = qa_corpus[1]
@ -49,9 +37,9 @@ async def test_qa_ollama(qa_corpus: Dataset):
@pytest.mark.asyncio @pytest.mark.asyncio
@pytest.mark.skipif(not OPENAI_AVAILABLE, reason="OpenAI not available") @pytest.mark.skipif(not OPENAI_AVAILABLE, reason="OpenAI not available")
async def test_qa_openai(qa_corpus: Dataset): async def test_qa_openai(qa_corpus: Dataset):
"""Test OpenAI QA basic functionality.""" """Test OpenAI QA with LLM judge."""
client = HaikuRAG(":memory:") client = HaikuRAG(":memory:")
qa = QuestionAnswerOpenAIAgent(client) # type: ignore qa = QuestionAnswerAgent(client, provider_model="openai:gpt-4o-mini")
llm_judge = LLMJudge() llm_judge = LLMJudge()
doc = qa_corpus[1] doc = qa_corpus[1]
@ -73,9 +61,11 @@ async def test_qa_openai(qa_corpus: Dataset):
@pytest.mark.asyncio @pytest.mark.asyncio
@pytest.mark.skipif(not ANTHROPIC_AVAILABLE, reason="Anthropic not available") @pytest.mark.skipif(not ANTHROPIC_AVAILABLE, reason="Anthropic not available")
async def test_qa_anthropic(qa_corpus: Dataset): async def test_qa_anthropic(qa_corpus: Dataset):
"""Test Anthropic QA basic functionality.""" """Test Anthropic QA with LLM judge."""
client = HaikuRAG(":memory:") client = HaikuRAG(":memory:")
qa = QuestionAnswerAnthropicAgent(client) # type: ignore qa = QuestionAnswerAgent(
client, provider_model="anthropic:claude-3-5-haiku-20241022"
)
llm_judge = LLMJudge() llm_judge = LLMJudge()
doc = qa_corpus[1] doc = qa_corpus[1]

View file

@ -1,8 +1,11 @@
import pytest import pytest
from haiku.rag.config import Config
from haiku.rag.reranking.base import RerankerBase from haiku.rag.reranking.base import RerankerBase
from haiku.rag.store.models.chunk import Chunk from haiku.rag.store.models.chunk import Chunk
COHERE_AVAILABLE = bool(Config.COHERE_API_KEY)
chunks = [ chunks = [
Chunk(content=content, document_id=i) Chunk(content=content, document_id=i)
for i, content in enumerate( for i, content in enumerate(
@ -43,6 +46,7 @@ async def test_mxbai_reranker():
@pytest.mark.asyncio @pytest.mark.asyncio
@pytest.mark.skipif(not COHERE_AVAILABLE, reason="Cohere API key not available")
async def test_cohere_reranker(): async def test_cohere_reranker():
try: try:
from haiku.rag.reranking.cohere import CohereReranker from haiku.rag.reranking.cohere import CohereReranker

519
uv.lock
View file

@ -28,6 +28,18 @@ wheels = [
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] ]
[[package]]
name = "ag-ui-protocol"
version = "0.1.8"
source = { registry = "https://pypi.org/simple" }
dependencies = [
{ name = "pydantic" },
]
sdist = { url = "https://files.pythonhosted.org/packages/27/de/0bddf7f26d5f38274c99401735c82ad59df9cead6de42f4bb2ad837286fe/ag_ui_protocol-0.1.8.tar.gz", hash = "sha256:eb745855e9fc30964c77e953890092f8bd7d4bbe6550d6413845428dd0faac0b", size = 5323, upload-time = "2025-07-15T10:55:36.389Z" }
wheels = [
{ url = "https://files.pythonhosted.org/packages/c4/00/40c6b0313c25d1ab6fac2ecba1cd5b15b1cd3c3a71b3d267ad890e405889/ag_ui_protocol-0.1.8-py3-none-any.whl", hash = "sha256:1567ccb067b7b8158035b941a985e7bb185172d660d4542f3f9c6fff77b55c6e", size = 7066, upload-time = "2025-07-15T10:55:35.075Z" },
]
[[package]] [[package]]
name = "aiohappyeyeballs" name = "aiohappyeyeballs"
version = "2.6.1" version = "2.6.1"
@ -137,7 +149,7 @@ wheels = [
[[package]] [[package]]
name = "anthropic" name = "anthropic"
version = "0.56.0" version = "0.63.0"
source = { registry = "https://pypi.org/simple" } source = { registry = "https://pypi.org/simple" }
dependencies = [ dependencies = [
{ name = "anyio" }, { name = "anyio" },
@ -148,9 +160,9 @@ dependencies = [
{ name = "sniffio" }, { name = "sniffio" },
{ name = "typing-extensions" }, { name = "typing-extensions" },
] ]
sdist = { url = "https://files.pythonhosted.org/packages/4d/40/0c4eb5728466849803782c8a86eb315af1a6eb0efea6a751de120ab845c9/anthropic-0.56.0.tar.gz", hash = "sha256:56fa9eb61afa004a1664bc85eed071e77b96c579b77395e9cc893097e599f72e", size = 421538, upload-time = "2025-07-01T19:39:10.805Z" } sdist = { url = "https://files.pythonhosted.org/packages/80/6e/3bedbd1c932cce98495e007b6d8007a139cf46adc5c889d700ec75ddd7f3/anthropic-0.63.0.tar.gz", hash = "sha256:d75ecfff17a0b96d845be3cbd93e06a48ea95aaa27add586748772fa5b926994", size = 427391, upload-time = "2025-08-12T16:59:58.079Z" }
wheels = [ wheels = [
{ url = "https://files.pythonhosted.org/packages/e5/90/7f4d4084f9c35c3ea3e784646ec12f9b2c8cf8743b2bb5489252659b5bda/anthropic-0.56.0-py3-none-any.whl", hash = "sha256:91f1f74abdcf0958d3296b657304588cc244b1107b89f973ff6f511afdacfc56", size = 289603, upload-time = "2025-07-01T19:39:08.794Z" }, { url = "https://files.pythonhosted.org/packages/8c/a1/83bdb1a8be76fbb3ceedae9dfe1b515cff56dcfbbc388b53070a27ce341f/anthropic-0.63.0-py3-none-any.whl", hash = "sha256:d1849fe1635ae4277f45a0e4365979ed69e6264b73350ce8a99fee701d347745", size = 296637, upload-time = "2025-08-12T16:59:56.841Z" },
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[[package]] [[package]]
@ -167,6 +179,15 @@ wheels = [
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] ]
[[package]]
name = "argcomplete"
version = "3.6.2"
source = { registry = "https://pypi.org/simple" }
sdist = { url = "https://files.pythonhosted.org/packages/16/0f/861e168fc813c56a78b35f3c30d91c6757d1fd185af1110f1aec784b35d0/argcomplete-3.6.2.tar.gz", hash = "sha256:d0519b1bc867f5f4f4713c41ad0aba73a4a5f007449716b16f385f2166dc6adf", size = 73403, upload-time = "2025-04-03T04:57:03.52Z" }
wheels = [
{ url = "https://files.pythonhosted.org/packages/31/da/e42d7a9d8dd33fa775f467e4028a47936da2f01e4b0e561f9ba0d74cb0ca/argcomplete-3.6.2-py3-none-any.whl", hash = "sha256:65b3133a29ad53fb42c48cf5114752c7ab66c1c38544fdf6460f450c09b42591", size = 43708, upload-time = "2025-04-03T04:57:01.591Z" },
]
[[package]] [[package]]
name = "attrs" name = "attrs"
version = "25.3.0" version = "25.3.0"
@ -233,6 +254,43 @@ wheels = [
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] ]
[[package]]
name = "boto3"
version = "1.40.7"
source = { registry = "https://pypi.org/simple" }
dependencies = [
{ name = "botocore" },
{ name = "jmespath" },
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