diff --git a/.gitignore b/.gitignore index 7f3d8110..1da3f5ad 100644 --- a/.gitignore +++ b/.gitignore @@ -18,3 +18,5 @@ tests/data/ # environment variables .env TODO.md +PLAN.md +DEVNOTES.md diff --git a/README.md b/README.md index 65217135..d6aab4d9 100644 --- a/README.md +++ b/README.md @@ -90,4 +90,5 @@ Full documentation at: https://ggozad.github.io/haiku.rag/ - [Configuration](https://ggozad.github.io/haiku.rag/configuration/) - Environment variables - [CLI](https://ggozad.github.io/haiku.rag/cli/) - Command reference - [Python API](https://ggozad.github.io/haiku.rag/python/) - Complete API docs +- [Agents](https://ggozad.github.io/haiku.rag/agents/) - QA agent and multi-agent research - [Benchmarks](https://ggozad.github.io/haiku.rag/benchmarks/) - Performance Benchmarks diff --git a/docs/agents.md b/docs/agents.md new file mode 100644 index 00000000..41a52c65 --- /dev/null +++ b/docs/agents.md @@ -0,0 +1,83 @@ +## Agents + +Two agentic flows are provided by haiku.rag: + +- Simple QA Agent — a focused question answering agent +- Research Multi‑Agent — a multi‑step, analyzable research workflow + + +### Simple QA Agent + +The simple QA agent answers a single question using the knowledge base. It retrieves relevant chunks, optionally expands context around them, and asks the model to answer strictly based on that context. + +Key points: + +- Uses a single `search_documents` tool to fetch relevant chunks +- Can be run with or without inline citations in the prompt +- Returns a plain string answer + +Python usage: + +```python +from haiku.rag.client import HaikuRAG +from haiku.rag.qa.agent import QuestionAnswerAgent + +client = HaikuRAG(path_to_db) + +# Choose a provider and model (see Configuration for env defaults) +agent = QuestionAnswerAgent( + client=client, + provider="openai", # or "ollama", "vllm", etc. + model="gpt-4o-mini", + use_citations=False, # set True to bias prompt towards citing sources +) + +answer = await agent.answer("What is climate change?") +print(answer) +``` + +### Research Multi‑Agent + +The research workflow coordinates specialized agents to plan, search, analyze, and synthesize a comprehensive answer. It is designed for deeper questions that benefit from iterative investigation and structured reporting. + +Components: + +- Orchestrator: Plans, coordinates, and loops until confidence is sufficient +- Search Specialist: Performs targeted RAG searches and answers sub‑questions +- Analysis & Evaluation: Extracts insights, identifies gaps, proposes new questions +- Synthesis: Produces a final structured research report + +Primary models: + +- `ResearchPlan` — produced by the orchestrator when planning + - `main_question: str` + - `sub_questions: list[str]` (standalone, self‑contained queries) +- `SearchAnswer` — produced by the search specialist for each sub‑question + - `query: str` — the executed sub‑question + - `answer: str` — the agent’s answer grounded in retrieved context + - `context: list[str]` — minimal verbatim snippets used for the answer + - `sources: list[str]` — document URIs aligned with `context` +- `EvaluationResult` — insights, new standalone questions, sufficiency & confidence +- `ResearchReport` — the final synthesized report + + +Python usage: + +```python +from haiku.rag.client import HaikuRAG +from haiku.rag.research import ResearchOrchestrator + +client = HaikuRAG(path_to_db) +orchestrator = ResearchOrchestrator(provider="openai", model="gpt-4o-mini") + +report = await orchestrator.conduct_research( + question="What are the main drivers and recent trends of global temperature anomalies since 1990?", + client=client, + max_iterations=2, + confidence_threshold=0.8, + verbose=False, +) + +print(report.title) +print(report.executive_summary) +``` diff --git a/docs/index.md b/docs/index.md index 17b6d404..a788105c 100644 --- a/docs/index.md +++ b/docs/index.md @@ -55,6 +55,7 @@ haiku-rag migrate old_database.sqlite # Migrate from SQLite - [Server](server.md) - File monitoring and server mode - [MCP](mcp.md) - Model Context Protocol integration - [Python](python.md) - Python API reference +- [Agents](agents.md) - QA agent and multi-agent research ## License diff --git a/docs/python.md b/docs/python.md index 925c2d52..94209792 100644 --- a/docs/python.md +++ b/docs/python.md @@ -204,3 +204,5 @@ print(answer) The QA agent will search your documents for relevant information and use the configured LLM to generate a comprehensive answer. With `cite=True`, responses include citations showing which documents were used as sources. The QA provider and model can be configured via environment variables (see [Configuration](configuration.md)). + +See also: [Agents](agents.md) for details on the QA agent and the multi‑agent research workflow. diff --git a/mkdocs.yml b/mkdocs.yml index a1ed910e..943f2576 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -61,8 +61,9 @@ nav: - Configuration: configuration.md - CLI: cli.md - Server: server.md - - MCP: mcp.md + - Agents: agents.md - Python: python.md + - MCP: mcp.md - Benchmarks: benchmarks.md markdown_extensions: - admonition diff --git a/pyproject.toml b/pyproject.toml index e3bf0f68..c0b18439 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -51,16 +51,16 @@ packages = ["src/haiku"] [dependency-groups] dev = [ - "datasets>=3.6.0", - "logfire>=4.6.0", + "datasets>=4.1.0", + "logfire>=4.7.0", "mkdocs>=1.6.1", "mkdocs-material>=9.6.14", "pre-commit>=4.2.0", - "pyright>=1.1.404", - "pytest>=8.4.0", - "pytest-asyncio>=1.0.0", - "pytest-cov>=6.2.1", - "ruff>=0.11.13", + "pyright>=1.1.405", + "pytest>=8.4.2", + "pytest-asyncio>=1.2.0", + "pytest-cov>=7.0.0", + "ruff>=0.13.0", ] [tool.ruff] diff --git a/src/haiku/rag/app.py b/src/haiku/rag/app.py index 334f0cc2..01311b86 100644 --- a/src/haiku/rag/app.py +++ b/src/haiku/rag/app.py @@ -9,6 +9,7 @@ from haiku.rag.client import HaikuRAG from haiku.rag.config import Config from haiku.rag.mcp import create_mcp_server from haiku.rag.monitor import FileWatcher +from haiku.rag.research.orchestrator import ResearchOrchestrator from haiku.rag.store.models.chunk import Chunk from haiku.rag.store.models.document import Document @@ -78,6 +79,85 @@ class HaikuRAGApp: except Exception as e: self.console.print(f"[red]Error: {e}[/red]") + async def research( + self, question: str, max_iterations: int = 3, verbose: bool = False + ): + """Run multi-agent research on a question.""" + async with HaikuRAG(db_path=self.db_path) as client: + try: + # Create orchestrator with default config or fallback to QA + orchestrator = ResearchOrchestrator() + + if verbose: + self.console.print( + f"[bold cyan]Starting research with {orchestrator.provider}:{orchestrator.model}[/bold cyan]" + ) + self.console.print(f"[bold blue]Question:[/bold blue] {question}") + self.console.print() + + # Conduct research + report = await orchestrator.conduct_research( + question=question, + client=client, + max_iterations=max_iterations, + verbose=verbose, + console=self.console if verbose else None, + ) + + # Display the report + self.console.print("[bold green]Research Report[/bold green]") + self.console.rule() + + # Title and Executive Summary + self.console.print(f"[bold]{report.title}[/bold]") + self.console.print() + self.console.print("[bold cyan]Executive Summary:[/bold cyan]") + self.console.print(report.executive_summary) + self.console.print() + + # Main Findings + if report.main_findings: + self.console.print("[bold cyan]Main Findings:[/bold cyan]") + for finding in report.main_findings: + self.console.print(f"• {finding}") + self.console.print() + + # Themes + if report.themes: + self.console.print("[bold cyan]Key Themes:[/bold cyan]") + for theme, explanation in report.themes.items(): + self.console.print(f"• [bold]{theme}[/bold]: {explanation}") + self.console.print() + + # Conclusions + if report.conclusions: + self.console.print("[bold cyan]Conclusions:[/bold cyan]") + for conclusion in report.conclusions: + self.console.print(f"• {conclusion}") + self.console.print() + + # Recommendations + if report.recommendations: + self.console.print("[bold cyan]Recommendations:[/bold cyan]") + for rec in report.recommendations: + self.console.print(f"• {rec}") + self.console.print() + + # Limitations + if report.limitations: + self.console.print("[bold yellow]Limitations:[/bold yellow]") + for limitation in report.limitations: + self.console.print(f"• {limitation}") + self.console.print() + + # Sources Summary + if report.sources_summary: + self.console.print("[bold cyan]Sources:[/bold cyan]") + self.console.print(report.sources_summary) + + except Exception as e: + self.console.print(f"[red]Error during research: {e}[/red]") + async def rebuild(self): async with HaikuRAG(db_path=self.db_path, skip_validation=True) as client: try: diff --git a/src/haiku/rag/cli.py b/src/haiku/rag/cli.py index f64e63a5..d02e56c7 100644 --- a/src/haiku/rag/cli.py +++ b/src/haiku/rag/cli.py @@ -3,6 +3,7 @@ import warnings from importlib.metadata import version from pathlib import Path +import logfire import typer from rich.console import Console @@ -12,6 +13,9 @@ from haiku.rag.logging import configure_cli_logging from haiku.rag.migration import migrate_sqlite_to_lancedb from haiku.rag.utils import is_up_to_date +logfire.configure(send_to_logfire="if-token-present") +logfire.instrument_pydantic_ai() + if not Config.ENV == "development": warnings.filterwarnings("ignore") @@ -235,6 +239,38 @@ def ask( asyncio.run(app.ask(question=question, cite=cite)) +@cli.command("research", help="Run multi-agent research and output a concise report") +def research( + question: str = typer.Argument( + help="The research question to investigate", + ), + max_iterations: int = typer.Option( + 3, + "--max-iterations", + "-n", + help="Maximum search/analyze iterations", + ), + db: Path = typer.Option( + Config.DEFAULT_DATA_DIR / "haiku.rag.lancedb", + "--db", + help="Path to the LanceDB database file", + ), + verbose: bool = typer.Option( + False, + "--verbose", + help="Show verbose progress output", + ), +): + app = HaikuRAGApp(db_path=db) + asyncio.run( + app.research( + question=question, + max_iterations=max_iterations, + verbose=verbose, + ) + ) + + @cli.command("settings", help="Display current configuration settings") def settings(): app = HaikuRAGApp(db_path=Path()) # Don't need actual DB for settings diff --git a/src/haiku/rag/config.py b/src/haiku/rag/config.py index 5a58beec..13227e69 100644 --- a/src/haiku/rag/config.py +++ b/src/haiku/rag/config.py @@ -27,7 +27,11 @@ class AppConfig(BaseModel): RERANK_MODEL: str = "" QA_PROVIDER: str = "ollama" - QA_MODEL: str = "qwen3" + QA_MODEL: str = "gpt-oss" + + # Research defaults (fallback to QA if not provided via env) + RESEARCH_PROVIDER: str = "ollama" + RESEARCH_MODEL: str = "gpt-oss" CHUNK_SIZE: int = 256 CONTEXT_CHUNK_RADIUS: int = 0 @@ -37,9 +41,11 @@ class AppConfig(BaseModel): MARKDOWN_PREPROCESSOR: str = "" OLLAMA_BASE_URL: str = "http://localhost:11434" + VLLM_EMBEDDINGS_BASE_URL: str = "" VLLM_RERANK_BASE_URL: str = "" VLLM_QA_BASE_URL: str = "" + VLLM_RESEARCH_BASE_URL: str = "" # Provider keys VOYAGE_API_KEY: str = "" diff --git a/src/haiku/rag/qa/agent.py b/src/haiku/rag/qa/agent.py index 594fad6e..b7edb6fa 100644 --- a/src/haiku/rag/qa/agent.py +++ b/src/haiku/rag/qa/agent.py @@ -6,7 +6,7 @@ from pydantic_ai.providers.openai import OpenAIProvider from haiku.rag.client import HaikuRAG from haiku.rag.config import Config -from haiku.rag.qa.prompts import SYSTEM_PROMPT, SYSTEM_PROMPT_WITH_CITATIONS +from haiku.rag.qa.prompts import QA_SYSTEM_PROMPT, QA_SYSTEM_PROMPT_WITH_CITATIONS class SearchResult(BaseModel): @@ -31,7 +31,9 @@ class QuestionAnswerAgent: ): self._client = client - system_prompt = SYSTEM_PROMPT_WITH_CITATIONS if use_citations else SYSTEM_PROMPT + system_prompt = ( + QA_SYSTEM_PROMPT_WITH_CITATIONS if use_citations else QA_SYSTEM_PROMPT + ) model_obj = self._get_model(provider, model) self._agent = Agent( diff --git a/src/haiku/rag/qa/prompts.py b/src/haiku/rag/qa/prompts.py index f865b09f..19896d2c 100644 --- a/src/haiku/rag/qa/prompts.py +++ b/src/haiku/rag/qa/prompts.py @@ -1,4 +1,4 @@ -SYSTEM_PROMPT = """ +QA_SYSTEM_PROMPT = """ You are a knowledgeable assistant that helps users find information from a document knowledge base. Your process: @@ -21,7 +21,7 @@ Be concise, and always maintain accuracy over completeness. Prefer short, direct /no_think """ -SYSTEM_PROMPT_WITH_CITATIONS = """ +QA_SYSTEM_PROMPT_WITH_CITATIONS = """ You are a knowledgeable assistant that helps users find information from a document knowledge base. IMPORTANT: You MUST use the search_documents tool for every question. Do not answer any question without first searching the knowledge base. diff --git a/src/haiku/rag/research/__init__.py b/src/haiku/rag/research/__init__.py new file mode 100644 index 00000000..e0716ee8 --- /dev/null +++ b/src/haiku/rag/research/__init__.py @@ -0,0 +1,35 @@ +"""Multi-agent research workflow for advanced RAG queries.""" + +from haiku.rag.research.base import ( + BaseResearchAgent, + ResearchOutput, + SearchAnswer, + SearchResult, +) +from haiku.rag.research.dependencies import ResearchContext, ResearchDependencies +from haiku.rag.research.evaluation_agent import ( + AnalysisEvaluationAgent, + EvaluationResult, +) +from haiku.rag.research.orchestrator import ResearchOrchestrator, ResearchPlan +from haiku.rag.research.search_agent import SearchSpecialistAgent +from haiku.rag.research.synthesis_agent import ResearchReport, SynthesisAgent + +__all__ = [ + # Base classes + "BaseResearchAgent", + "ResearchDependencies", + "ResearchContext", + "SearchResult", + "ResearchOutput", + # Specialized agents + "SearchAnswer", + "SearchSpecialistAgent", + "AnalysisEvaluationAgent", + "EvaluationResult", + "SynthesisAgent", + "ResearchReport", + # Orchestrator + "ResearchOrchestrator", + "ResearchPlan", +] diff --git a/src/haiku/rag/research/base.py b/src/haiku/rag/research/base.py new file mode 100644 index 00000000..11c3c64a --- /dev/null +++ b/src/haiku/rag/research/base.py @@ -0,0 +1,122 @@ +from abc import ABC, abstractmethod +from typing import TYPE_CHECKING, Any + +from pydantic import BaseModel, Field +from pydantic_ai import Agent +from pydantic_ai.models.openai import OpenAIChatModel +from pydantic_ai.output import ToolOutput +from pydantic_ai.providers.ollama import OllamaProvider +from pydantic_ai.providers.openai import OpenAIProvider +from pydantic_ai.run import AgentRunResult + +from haiku.rag.config import Config + +if TYPE_CHECKING: + from haiku.rag.research.dependencies import ResearchDependencies + + +class BaseResearchAgent[T](ABC): + """Base class for all research agents.""" + + def __init__( + self, + provider: str, + model: str, + output_type: type[T], + ): + self.provider = provider + self.model = model + self.output_type = output_type + + model_obj = self._get_model(provider, model) + + # Import deps type lazily to avoid circular import during module load + from haiku.rag.research.dependencies import ResearchDependencies + + self._agent = Agent( + model=model_obj, + deps_type=ResearchDependencies, + output_type=ToolOutput(self.output_type, max_retries=3), + system_prompt=self.get_system_prompt(), + ) + + # Register tools + self.register_tools() + + def _get_model(self, provider: str, model: str): + """Get the appropriate model object for the provider.""" + if provider == "ollama": + return OpenAIChatModel( + model_name=model, + provider=OllamaProvider(base_url=f"{Config.OLLAMA_BASE_URL}/v1"), + ) + elif provider == "vllm": + return OpenAIChatModel( + model_name=model, + provider=OpenAIProvider( + base_url=f"{Config.VLLM_RESEARCH_BASE_URL or Config.VLLM_QA_BASE_URL}/v1", + api_key="none", + ), + ) + else: + # For all other providers, use the provider:model format + return f"{provider}:{model}" + + @abstractmethod + def get_system_prompt(self) -> str: + """Return the system prompt for this agent.""" + pass + + @abstractmethod + def register_tools(self) -> None: + """Register agent-specific tools.""" + pass + + async def run( + self, prompt: str, deps: ResearchDependencies, **kwargs + ) -> AgentRunResult[T]: + """Execute the agent.""" + return await self._agent.run(prompt, deps=deps, **kwargs) + + @property + def agent(self) -> Agent[Any, T]: + """Access the underlying Pydantic AI agent.""" + return self._agent + + +class SearchResult(BaseModel): + """Standard search result format.""" + + content: str + score: float + document_uri: str + metadata: dict[str, Any] = Field(default_factory=dict) + + +class ResearchOutput(BaseModel): + """Standard research output format.""" + + summary: str + detailed_findings: list[str] + sources: list[str] + confidence: float + + +class SearchAnswer(BaseModel): + """Structured output for the SearchSpecialist agent.""" + + query: str = Field(description="The search query that was performed") + answer: str = Field(description="The answer generated based on the context") + context: list[str] = Field( + description=( + "Only the minimal set of relevant snippets (verbatim) that directly " + "support the answer" + ) + ) + sources: list[str] = Field( + description=( + "Document URIs corresponding to the snippets actually used in the" + " answer (one URI per snippet; omit if none)" + ), + default_factory=list, + ) diff --git a/src/haiku/rag/research/dependencies.py b/src/haiku/rag/research/dependencies.py new file mode 100644 index 00000000..3438a796 --- /dev/null +++ b/src/haiku/rag/research/dependencies.py @@ -0,0 +1,45 @@ +from pydantic import BaseModel, Field + +from haiku.rag.client import HaikuRAG +from haiku.rag.research.base import SearchAnswer + + +class ResearchContext(BaseModel): + """Context shared across research agents.""" + + original_question: str = Field(description="The original research question") + sub_questions: list[str] = Field( + default_factory=list, description="Decomposed sub-questions" + ) + qa_responses: list["SearchAnswer"] = Field( + default_factory=list, description="Structured QA pairs used during research" + ) + insights: list[str] = Field( + default_factory=list, description="Key insights discovered" + ) + gaps: list[str] = Field( + default_factory=list, description="Identified information gaps" + ) + + def add_qa_response(self, qa: "SearchAnswer") -> None: + """Add a structured QA response (minimal context already included).""" + self.qa_responses.append(qa) + + def add_insight(self, insight: str) -> None: + """Add a key insight.""" + if insight not in self.insights: + self.insights.append(insight) + + def add_gap(self, gap: str) -> None: + """Identify an information gap.""" + if gap not in self.gaps: + self.gaps.append(gap) + + +class ResearchDependencies(BaseModel): + """Dependencies for research agents with multi-agent context.""" + + model_config = {"arbitrary_types_allowed": True} + + client: HaikuRAG = Field(description="RAG client for document operations") + context: ResearchContext = Field(description="Shared research context") diff --git a/src/haiku/rag/research/evaluation_agent.py b/src/haiku/rag/research/evaluation_agent.py new file mode 100644 index 00000000..5b924c81 --- /dev/null +++ b/src/haiku/rag/research/evaluation_agent.py @@ -0,0 +1,40 @@ +from pydantic import BaseModel, Field + +from haiku.rag.research.base import BaseResearchAgent +from haiku.rag.research.prompts import EVALUATION_AGENT_PROMPT + + +class EvaluationResult(BaseModel): + """Result of analysis and evaluation.""" + + key_insights: list[str] = Field( + description="Main insights extracted from the research so far" + ) + new_questions: list[str] = Field( + description="New sub-questions to add to the research (max 3)", max_length=3 + ) + confidence_score: float = Field( + description="Confidence level in the completeness of research (0-1)", + ge=0.0, + le=1.0, + ) + is_sufficient: bool = Field( + description="Whether the research is sufficient to answer the original question" + ) + reasoning: str = Field( + description="Explanation of why the research is or isn't complete" + ) + + +class AnalysisEvaluationAgent(BaseResearchAgent[EvaluationResult]): + """Agent that analyzes findings and evaluates research completeness.""" + + def __init__(self, provider: str, model: str) -> None: + super().__init__(provider, model, output_type=EvaluationResult) + + def get_system_prompt(self) -> str: + return EVALUATION_AGENT_PROMPT + + def register_tools(self) -> None: + """No additional tools needed - uses LLM capabilities directly.""" + pass diff --git a/src/haiku/rag/research/orchestrator.py b/src/haiku/rag/research/orchestrator.py new file mode 100644 index 00000000..ffde5736 --- /dev/null +++ b/src/haiku/rag/research/orchestrator.py @@ -0,0 +1,265 @@ +from typing import Any + +from pydantic import BaseModel, Field +from pydantic_ai.format_prompt import format_as_xml +from pydantic_ai.run import AgentRunResult +from rich.console import Console + +from haiku.rag.config import Config +from haiku.rag.research.base import BaseResearchAgent +from haiku.rag.research.dependencies import ResearchContext, ResearchDependencies +from haiku.rag.research.evaluation_agent import ( + AnalysisEvaluationAgent, + EvaluationResult, +) +from haiku.rag.research.prompts import ORCHESTRATOR_PROMPT +from haiku.rag.research.search_agent import SearchSpecialistAgent +from haiku.rag.research.synthesis_agent import ResearchReport, SynthesisAgent + + +class ResearchPlan(BaseModel): + """Research execution plan.""" + + main_question: str = Field(description="The main research question") + sub_questions: list[str] = Field( + description="Decomposed sub-questions to investigate (max 3)", max_length=3 + ) + + +class ResearchOrchestrator(BaseResearchAgent[ResearchPlan]): + """Orchestrator agent that coordinates the research workflow.""" + + def __init__( + self, provider: str | None = Config.RESEARCH_PROVIDER, model: str | None = None + ): + # Use provided values or fall back to config defaults + provider = provider or Config.RESEARCH_PROVIDER or Config.QA_PROVIDER + model = model or Config.RESEARCH_MODEL or Config.QA_MODEL + + super().__init__(provider, model, output_type=ResearchPlan) + + self.search_agent: SearchSpecialistAgent = SearchSpecialistAgent( + provider, model + ) + self.evaluation_agent: AnalysisEvaluationAgent = AnalysisEvaluationAgent( + provider, model + ) + self.synthesis_agent: SynthesisAgent = SynthesisAgent(provider, model) + + def get_system_prompt(self) -> str: + return ORCHESTRATOR_PROMPT + + def register_tools(self) -> None: + """Register orchestration tools.""" + # Tools are no longer needed - orchestrator directly calls agents + pass + + def _format_context_for_prompt(self, context: ResearchContext) -> str: + """Format the research context as XML for inclusion in prompts.""" + + context_data = { + "original_question": context.original_question, + "unanswered_questions": context.sub_questions, + "qa_responses": [ + {"question": qa.query, "answer": qa.answer} + for qa in context.qa_responses + ], + "insights": context.insights, + "gaps": context.gaps, + } + return format_as_xml(context_data, root_tag="research_context") + + async def conduct_research( + self, + question: str, + client: Any, + max_iterations: int = 3, + confidence_threshold: float = 0.8, + verbose: bool = False, + console: Console | None = None, + ) -> ResearchReport: + """Conduct comprehensive research on a question. + + Args: + question: The research question to investigate + client: HaikuRAG client for document operations + max_iterations: Maximum number of search-analyze-clarify cycles + confidence_threshold: Minimum confidence level to stop research (0-1) + verbose: If True, print progress and intermediate results + console: Optional Rich console for output + + Returns: + ResearchReport with comprehensive findings + """ + + # Initialize context + context = ResearchContext(original_question=question) + deps = ResearchDependencies(client=client, context=context) + + # Use provided console or create a new one + console = console or Console() if verbose else None + + # Create initial research plan + if console: + console.print("\n[bold cyan]📋 Creating research plan...[/bold cyan]") + + plan_result: AgentRunResult[ResearchPlan] = await self.run( + f"Create a research plan for: {question}", deps=deps + ) + + context.sub_questions = plan_result.output.sub_questions + + if console: + console.print("\n[bold green]✅ Research Plan Created:[/bold green]") + console.print( + f" [bold]Main Question:[/bold] {plan_result.output.main_question}" + ) + console.print(" [bold]Sub-questions:[/bold]") + for i, sq in enumerate(plan_result.output.sub_questions, 1): + console.print(f" {i}. {sq}") + console.print() + + # Execute research iterations + for iteration in range(max_iterations): + if console: + console.rule( + f"[bold yellow]🔄 Iteration {iteration + 1}/{max_iterations}[/bold yellow]" + ) + + # Check if we have questions to search + if not context.sub_questions: + # No more questions to explore + if console: + console.print( + "[yellow]No more questions to explore. Concluding research.[/yellow]" + ) + break + + # Use current sub-questions for this iteration + questions_to_search = context.sub_questions + + # Search phase - answer all questions in this iteration + if console: + console.print( + f"\n[bold cyan]🔍 Searching & Answering {len(questions_to_search)} questions:[/bold cyan]" + ) + for i, q in enumerate(questions_to_search, 1): + console.print(f" {i}. {q}") + + # Run searches for all questions and remove answered ones + answered_questions = [] + for search_question in questions_to_search: + try: + await self.search_agent.run(search_question, deps=deps) + except Exception as e: # pragma: no cover - defensive + if console: + console.print( + f"\n [red]×[/red] Omitting failed question: {search_question} ({e})" + ) + finally: + answered_questions.append(search_question) + + if console and context.qa_responses: + # Show the last QA response (which should be for this question) + latest_qa = context.qa_responses[-1] + answer_preview = ( + latest_qa.answer[:150] + "..." + if len(latest_qa.answer) > 150 + else latest_qa.answer + ) + console.print( + f"\n [green]✓[/green] {search_question[:50]}..." + if len(search_question) > 50 + else f"\n [green]✓[/green] {search_question}" + ) + console.print(f" {answer_preview}") + + # Remove answered questions from the list + for question in answered_questions: + if question in context.sub_questions: + context.sub_questions.remove(question) + + # Analysis and Evaluation phase + if console: + console.print( + "\n[bold cyan]📊 Analyzing and evaluating research progress...[/bold cyan]" + ) + + # Format context for the evaluation agent + context_xml = self._format_context_for_prompt(context) + evaluation_prompt = f"""Analyze all gathered information and evaluate the completeness of research. + +{context_xml} + +Evaluate the research progress for the original question and identify any remaining gaps.""" + + evaluation_result = await self.evaluation_agent.run( + evaluation_prompt, + deps=deps, + ) + + if console and evaluation_result.output: + output = evaluation_result.output + if output.key_insights: + console.print(" [bold]Key insights:[/bold]") + for insight in output.key_insights: + console.print(f" • {insight}") + console.print( + f" Confidence: [yellow]{output.confidence_score:.1%}[/yellow]" + ) + status = ( + "[green]Yes[/green]" if output.is_sufficient else "[red]No[/red]" + ) + console.print(f" Sufficient: {status}") + + # Store insights + for insight in evaluation_result.output.key_insights: + context.add_insight(insight) + + # Add new questions to the sub-questions list + for new_q in evaluation_result.output.new_questions: + if new_q not in context.sub_questions: + context.sub_questions.append(new_q) + + # Check if research is sufficient + if self._should_stop_research(evaluation_result, confidence_threshold): + if console: + console.print( + f"\n[bold green]✅ Stopping research:[/bold green] {evaluation_result.output.reasoning}" + ) + break + + # Generate final report + if console: + console.print( + "\n[bold cyan]📝 Generating final research report...[/bold cyan]" + ) + + # Format context for the synthesis agent + final_context_xml = self._format_context_for_prompt(context) + synthesis_prompt = f"""Generate a comprehensive research report based on all gathered information. + +{final_context_xml} + +Create a detailed report that synthesizes all findings into a coherent response.""" + + report_result: AgentRunResult[ResearchReport] = await self.synthesis_agent.run( + synthesis_prompt, deps=deps + ) + + if console: + console.print("[bold green]✅ Research complete![/bold green]") + + return report_result.output + + def _should_stop_research( + self, + evaluation_result: AgentRunResult[EvaluationResult], + confidence_threshold: float, + ) -> bool: + """Determine if research should stop based on evaluation.""" + + result = evaluation_result.output + + # Stop if the agent indicates sufficient information AND confidence exceeds threshold + return result.is_sufficient and result.confidence_score >= confidence_threshold diff --git a/src/haiku/rag/research/prompts.py b/src/haiku/rag/research/prompts.py new file mode 100644 index 00000000..4bcec6a6 --- /dev/null +++ b/src/haiku/rag/research/prompts.py @@ -0,0 +1,116 @@ +ORCHESTRATOR_PROMPT = """You are a research orchestrator responsible for coordinating a comprehensive research workflow. + +Your role is to: +1. Understand and decompose the research question +2. Plan a systematic research approach +3. Coordinate specialized agents to gather and analyze information +4. Ensure comprehensive coverage of the topic +5. Iterate based on findings and gaps + +Create a research plan that: +- Breaks down the question into at most 3 focused sub-questions +- Each sub-question should target a specific aspect of the research +- Prioritize the most important aspects to investigate +- Ensure comprehensive coverage within the 3-question limit +- IMPORTANT: Make each sub-question a standalone, self-contained query that can + be executed without additional context. Include necessary entities, scope, + timeframe, and qualifiers. Avoid pronouns like "it/they/this"; write queries + that make sense in isolation.""" + +SEARCH_AGENT_PROMPT = """You are a search and question-answering specialist. + +Your role is to: +1. Search the knowledge base for relevant information +2. Analyze the retrieved documents +3. Provide an accurate answer strictly grounded in the retrieved context + +Output format: +- You must return a SearchAnswer model with fields: + - query: the question being answered (echo the user query) + - answer: your final answer based only on the provided context + - context: list[str] of only the minimal set of verbatim snippet texts you + used to justify the answer (do not include unrelated text; do not invent) + - sources: list[str] of document_uri values corresponding to the snippets you + actually used in the answer (one URI per context snippet, order aligned) + +Tool usage: +- Always call the search_and_answer tool before drafting any answer. +- The tool returns XML containing only a list of snippets, where each snippet + has the verbatim `text`, a `score` indicating relevance, and the + `document_uri` it came from. +- You may call the tool multiple times to refine or broaden context, but do not + exceed 3 total tool calls per question. Prefer precision over volume. +- Use scores to prioritize evidence, but include only the minimal subset of + snippet texts (verbatim) in SearchAnswer.context. +- Set SearchAnswer.sources to the matching document_uris for the snippets you + used (one URI per snippet, aligned by order). Context must be text-only. +- If no relevant information is found, say so and return an empty context list. + +Important: +- Do not include any content in the answer that is not supported by the context. +- Keep context snippets short (just the necessary lines), verbatim, and focused.""" + +EVALUATION_AGENT_PROMPT = """You are an analysis and evaluation specialist for research workflows. + +You have access to: +- The original research question +- Question-answer pairs from search operations +- Raw search results and source documents +- Previously identified insights + +Your dual role is to: + +ANALYSIS: +1. Extract key insights from all gathered information +2. Identify patterns and connections across sources +3. Synthesize findings into coherent understanding +4. Focus on the most important discoveries + +EVALUATION: +1. Assess if we have sufficient information to answer the original question +2. Calculate a confidence score (0-1) based on: + - Coverage of the main question's aspects + - Quality and consistency of sources + - Depth of information gathered +3. Identify specific gaps that still need investigation +4. Generate up to 3 new sub-questions that haven't been answered yet + +Be critical and thorough in your evaluation. Only mark research as sufficient when: +- All major aspects of the question are addressed +- Sources provide consistent, reliable information +- The depth of coverage meets the question's requirements +- No critical gaps remain + +Generate new sub-questions that: +- Target specific unexplored aspects not covered by existing questions +- Seek clarification on ambiguities +- Explore important edge cases or exceptions +- Are focused and actionable (max 3) +- Do NOT repeat or rephrase questions that have already been answered (see qa_responses) +- Should be genuinely new areas to explore +- Must be standalone, self-contained queries: include entities, scope, and any + needed qualifiers (e.g., timeframe, region), and avoid ambiguous pronouns so + they can be executed independently.""" + +SYNTHESIS_AGENT_PROMPT = """You are a synthesis specialist agent focused on creating comprehensive research reports. + +Your role is to: +1. Synthesize all gathered information into a coherent narrative +2. Present findings in a clear, structured format +3. Draw evidence-based conclusions +4. Acknowledge limitations and uncertainties +5. Provide actionable recommendations +6. Maintain academic rigor and objectivity + +Your report should be: +- Comprehensive yet concise +- Well-structured and easy to follow +- Based solely on evidence from the research +- Transparent about limitations +- Professional and objective in tone + +Focus on creating a report that provides clear value to the reader by: +- Answering the original research question thoroughly +- Highlighting the most important findings +- Explaining the implications of the research +- Suggesting concrete next steps""" diff --git a/src/haiku/rag/research/search_agent.py b/src/haiku/rag/research/search_agent.py new file mode 100644 index 00000000..200f619a --- /dev/null +++ b/src/haiku/rag/research/search_agent.py @@ -0,0 +1,64 @@ +from pydantic_ai import RunContext +from pydantic_ai.format_prompt import format_as_xml +from pydantic_ai.run import AgentRunResult + +from haiku.rag.research.base import BaseResearchAgent, SearchAnswer +from haiku.rag.research.dependencies import ResearchDependencies +from haiku.rag.research.prompts import SEARCH_AGENT_PROMPT + + +class SearchSpecialistAgent(BaseResearchAgent[SearchAnswer]): + """Agent specialized in answering questions using RAG search.""" + + def __init__(self, provider: str, model: str) -> None: + super().__init__(provider, model, output_type=SearchAnswer) + + async def run( + self, prompt: str, deps: ResearchDependencies, **kwargs + ) -> AgentRunResult[SearchAnswer]: + """Execute the agent and persist the QA pair in shared context. + + Pydantic AI enforces `SearchAnswer` as the output model; we just store + the QA response with the last search results as sources. + """ + result = await super().run(prompt, deps, **kwargs) + + if result.output: + deps.context.add_qa_response(result.output) + + return result + + def get_system_prompt(self) -> str: + return SEARCH_AGENT_PROMPT + + def register_tools(self) -> None: + """Register search-specific tools.""" + + @self.agent.tool + async def search_and_answer( + ctx: RunContext[ResearchDependencies], + query: str, + limit: int = 5, + ) -> str: + """Search the KB and return a concise context pack.""" + # Remove quotes from queries as this requires positional indexing in lancedb + query = query.replace('"', "") + search_results = await ctx.deps.client.search(query, limit=limit) + expanded = await ctx.deps.client.expand_context(search_results) + + snippet_entries = [ + { + "text": chunk.content, + "score": score, + "document_uri": (chunk.document_uri or ""), + } + for chunk, score in expanded + ] + + # Return an XML-formatted payload with the question and snippets. + if snippet_entries: + return format_as_xml(snippet_entries, root_tag="snippets") + else: + return ( + f"No relevant information found in the knowledge base for: {query}" + ) diff --git a/src/haiku/rag/research/synthesis_agent.py b/src/haiku/rag/research/synthesis_agent.py new file mode 100644 index 00000000..45349789 --- /dev/null +++ b/src/haiku/rag/research/synthesis_agent.py @@ -0,0 +1,39 @@ +from pydantic import BaseModel, Field + +from haiku.rag.research.base import BaseResearchAgent +from haiku.rag.research.prompts import SYNTHESIS_AGENT_PROMPT + + +class ResearchReport(BaseModel): + """Final research report structure.""" + + title: str = Field(description="Concise title for the research") + executive_summary: str = Field(description="Brief overview of key findings") + main_findings: list[str] = Field( + description="Primary research findings with supporting evidence" + ) + themes: dict[str, str] = Field(description="Major themes and their explanations") + conclusions: list[str] = Field(description="Evidence-based conclusions") + limitations: list[str] = Field(description="Limitations of the current research") + recommendations: list[str] = Field( + description="Actionable recommendations based on findings" + ) + sources_summary: str = Field( + description="Summary of sources used and their reliability" + ) + + +class SynthesisAgent(BaseResearchAgent[ResearchReport]): + """Agent specialized in synthesizing research into comprehensive reports.""" + + def __init__(self, provider: str, model: str) -> None: + super().__init__(provider, model, output_type=ResearchReport) + + def get_system_prompt(self) -> str: + return SYNTHESIS_AGENT_PROMPT + + def register_tools(self) -> None: + """Register synthesis-specific tools.""" + # The agent will use its LLM capabilities directly for synthesis + # The structured output will guide the report generation + pass diff --git a/tests/research/test_evaluation_agent.py b/tests/research/test_evaluation_agent.py new file mode 100644 index 00000000..fd63c5a4 --- /dev/null +++ b/tests/research/test_evaluation_agent.py @@ -0,0 +1,14 @@ +from haiku.rag.research.evaluation_agent import ( + AnalysisEvaluationAgent, + EvaluationResult, +) + + +class TestAnalysisEvaluationAgent: + """Lean tests for AnalysisEvaluationAgent without LLM mocking.""" + + def test_agent_initialization(self): + agent = AnalysisEvaluationAgent(provider="openai", model="gpt-4") + assert agent.provider == "openai" + assert agent.model == "gpt-4" + assert agent.output_type == EvaluationResult diff --git a/tests/research/test_orchestrator.py b/tests/research/test_orchestrator.py new file mode 100644 index 00000000..09d44c6e --- /dev/null +++ b/tests/research/test_orchestrator.py @@ -0,0 +1,179 @@ +from unittest.mock import AsyncMock, create_autospec + +import pytest +from pydantic_ai.models.test import TestModel + +from haiku.rag.client import HaikuRAG +from haiku.rag.research.dependencies import ResearchContext, ResearchDependencies +from haiku.rag.research.evaluation_agent import EvaluationResult +from haiku.rag.research.orchestrator import ResearchOrchestrator, ResearchPlan +from haiku.rag.research.synthesis_agent import ResearchReport +from haiku.rag.store.models.chunk import Chunk + + +@pytest.fixture +def test_model(): + """Create a test model for orchestrator testing.""" + return TestModel() + + +@pytest.fixture +def mock_client(): + """Create a mock HaikuRAG client.""" + client = create_autospec(HaikuRAG, instance=True) + client.search = AsyncMock() + client.expand_context = AsyncMock() + return client + + +@pytest.fixture +def research_context(): + """Create a research context.""" + return ResearchContext(original_question="What is climate change?") + + +@pytest.fixture +def research_deps(mock_client, research_context): + """Create research dependencies.""" + return ResearchDependencies(client=mock_client, context=research_context) + + +def create_mock_chunk(chunk_id: str, content: str, score: float = 0.8): + """Helper to create mock chunk objects.""" + return Chunk( + id=chunk_id, + document_id=f"doc_{chunk_id}", + content=content, + document_uri=f"doc_{chunk_id}.md", + metadata={}, + ), score + + +class TestResearchOrchestrator: + """Test suite for ResearchOrchestrator.""" + + def test_orchestrator_uses_config_defaults(self): + """Test that orchestrator uses config defaults when no args provided.""" + orchestrator = ResearchOrchestrator() + + # Should use RESEARCH_PROVIDER/MODEL if set, else QA_PROVIDER/MODEL + assert orchestrator.provider is not None + assert orchestrator.model is not None + + # All agents should use the same provider/model + assert orchestrator.search_agent.provider == orchestrator.provider + assert orchestrator.search_agent.model == orchestrator.model + assert orchestrator.evaluation_agent.provider == orchestrator.provider + assert orchestrator.evaluation_agent.model == orchestrator.model + assert orchestrator.synthesis_agent.provider == orchestrator.provider + assert orchestrator.synthesis_agent.model == orchestrator.model + + def test_orchestrator_initialization(self): + """Test that orchestrator initializes all agents correctly.""" + orchestrator = ResearchOrchestrator(provider="openai", model="gpt-4") + + # Check all agents are initialized + assert orchestrator.search_agent is not None + assert orchestrator.evaluation_agent is not None + assert orchestrator.synthesis_agent is not None + + # Check they all use the same provider and model + assert orchestrator.search_agent.provider == "openai" + assert orchestrator.search_agent.model == "gpt-4" + assert orchestrator.evaluation_agent.provider == "openai" + assert orchestrator.evaluation_agent.model == "gpt-4" + assert orchestrator.synthesis_agent.provider == "openai" + assert orchestrator.synthesis_agent.model == "gpt-4" + + def test_orchestrator_has_correct_output_type(self): + """Test that orchestrator's output type is ResearchPlan.""" + orchestrator = ResearchOrchestrator(provider="openai", model="gpt-4") + assert orchestrator.output_type == ResearchPlan + + def test_orchestrator_has_no_tools(self): + """Test that orchestrator no longer registers tools (direct agent calls now).""" + orchestrator = ResearchOrchestrator(provider="openai", model="gpt-4") + + # Get the tools from the agent + tools = orchestrator.agent._function_toolset.tools + tool_names = list(tools.keys()) + + # Should have no tools since we call agents directly now + assert len(tool_names) == 0 + + def test_should_stop_research_logic(self): + """Test the stopping logic based on EvaluationResult.""" + orchestrator = ResearchOrchestrator(provider="openai", model="gpt-4") + + # Create mock evaluation results + from unittest.mock import MagicMock + + # Sufficient research result + sufficient_result = MagicMock() + sufficient_result.output = EvaluationResult( + key_insights=["Climate is changing", "Human activity is the cause"], + new_questions=[], + confidence_score=0.9, + is_sufficient=True, + reasoning="All aspects covered comprehensively", + ) + + # Insufficient research result + insufficient_result = MagicMock() + insufficient_result.output = EvaluationResult( + key_insights=["Some data found"], + new_questions=[ + "What about economic impacts?", + "Regional variations?", + ], + confidence_score=0.4, + is_sufficient=False, + reasoning="Major gaps remain in understanding", + ) + + # Test with sufficient research (threshold 0.8) + assert orchestrator._should_stop_research(sufficient_result, 0.8) + + # Test with insufficient research + assert not orchestrator._should_stop_research(insufficient_result, 0.8) + + # Test with high confidence but below threshold + sufficient_result.output.confidence_score = 0.75 + assert not orchestrator._should_stop_research(sufficient_result, 0.8) + + # Test with is_sufficient=False even with high confidence + insufficient_result.output.confidence_score = 0.95 + assert not orchestrator._should_stop_research(insufficient_result, 0.8) + + @pytest.mark.asyncio + async def test_conduct_research_workflow(self, test_model, mock_client): + """Test the basic research workflow using TestModel.""" + orchestrator = ResearchOrchestrator(provider="openai", model="gpt-4") + + # Setup mock client returns + mock_chunks = [ + create_mock_chunk("1", "Climate change information"), + ] + mock_client.search.return_value = mock_chunks + mock_client.expand_context.return_value = mock_chunks + + # Use TestModel for all agents + with orchestrator.agent.override(model=test_model): + with orchestrator.search_agent.agent.override(model=test_model): + with orchestrator.evaluation_agent.agent.override(model=test_model): + with orchestrator.synthesis_agent.agent.override(model=test_model): + # Run the research + report = await orchestrator.conduct_research( + "What is climate change?", mock_client, max_iterations=1 + ) + + # Verify we got a valid report structure + assert isinstance(report, ResearchReport) + assert report.title + assert report.executive_summary + assert isinstance(report.main_findings, list) + assert isinstance(report.themes, dict) + assert isinstance(report.conclusions, list) + assert isinstance(report.limitations, list) + assert isinstance(report.recommendations, list) + assert report.sources_summary diff --git a/tests/research/test_search_agent.py b/tests/research/test_search_agent.py new file mode 100644 index 00000000..a7a9062c --- /dev/null +++ b/tests/research/test_search_agent.py @@ -0,0 +1,11 @@ +from haiku.rag.research import SearchAnswer, SearchSpecialistAgent + + +class TestSearchSpecialistAgent: + """Lean tests for SearchSpecialistAgent without LLM mocking.""" + + def test_agent_initialization(self): + agent = SearchSpecialistAgent(provider="openai", model="gpt-4") + assert agent.provider == "openai" + assert agent.model == "gpt-4" + assert agent.output_type is SearchAnswer diff --git a/tests/research/test_synthesis_agent.py b/tests/research/test_synthesis_agent.py new file mode 100644 index 00000000..666662c7 --- /dev/null +++ b/tests/research/test_synthesis_agent.py @@ -0,0 +1,11 @@ +from haiku.rag.research.synthesis_agent import ResearchReport, SynthesisAgent + + +class TestSynthesisAgent: + """Lean tests for SynthesisAgent without LLM mocking.""" + + def test_agent_initialization(self): + agent = SynthesisAgent(provider="openai", model="gpt-4") + assert agent.provider == "openai" + assert agent.model == "gpt-4" + assert agent.output_type == ResearchReport diff --git a/uv.lock b/uv.lock index e2a6132a..2ba6f7be 100644 --- a/uv.lock +++ b/uv.lock @@ -2,20 +2,20 @@ version = 1 revision = 3 requires-python = ">=3.12" resolution-markers = [ - "python_full_version >= '3.14' and sys_platform == 'darwin'", "python_full_version == '3.13.*' and sys_platform == 'darwin'", - "python_full_version < '3.13' and sys_platform == 'darwin'", - "python_full_version >= '3.14' and platform_machine == 'aarch64' and sys_platform == 'linux'", "python_full_version == '3.13.*' and platform_machine == 'aarch64' and sys_platform == 'linux'", - "python_full_version < '3.13' and platform_machine == 'aarch64' and sys_platform == 'linux'", - "(python_full_version >= '3.14' and platform_machine != 'aarch64' and sys_platform == 'linux') or (python_full_version >= '3.14' 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