feat(#203): per (document, store) ingestion state

Introduces the data layer for multi-store ingestion. Documents can now
live in multiple stores, each with its own Ingested/Stale/Failed state.
The doc-level lifecycle (#202) becomes the aggregate over all per-store
links, computed by a pure domain function.

Domain
- Store entity (name, slug, kind, embedder, config, is_default)
- DocumentStoreLink entity with mark_ingested / mark_stale / mark_failed
  helpers
- StoreKind and DocumentStoreLinkState enums
- aggregate_lifecycle(): pure function — Failed > Stale > Ingested
  > fallback (the doc's pre-link Uploaded/Parsed/Chunked state)

Persistence
- New tables 'stores' and 'document_store_links' with the right indexes
  (doc_id, store_id, state) and a UNIQUE (doc, store) on the link
- Default 'opensearch' store seeded idempotently in init_db, embedder
  pulled from DEFAULT_EMBEDDER (fallback bge-m3)
- SqliteStoreRepository (find_by_slug, find_by_id, get_default, …)
- SqliteDocumentStoreLinkRepository with ON CONFLICT … DO UPDATE upsert

Ports
- StoreRepository and DocumentStoreLinkRepository protocols added

Tests
- 14 new tests: seed idempotency, insert/find round-trips, UNIQUE
  constraint, cascade delete with the document, every link state
  round-trips, aggregation rule with all branches

Refs #203

.env.example

@@ -18,10 +18,6 @@
 # Max upload file size in MB (default: 50, 0 = unlimited)
 # MAX_FILE_SIZE_MB=50
 
-# Nginx body size limit — nginx format (default: 200M, 0 = unlimited).
-# Must be >= MAX_FILE_SIZE_MB. Backend MAX_FILE_SIZE_MB is the effective arbiter.
-# NGINX_MAX_BODY_SIZE=200M
-
 # Max pages per PDF (default: 0 = unlimited). Set to 20 for HF Spaces.
 # MAX_PAGE_COUNT=0
 

.github/workflows/docling-compat.yml

@@ -27,7 +27,7 @@ jobs:
         with:
           python-version: "3.12"
           cache: pip
-          cache-dependency-path: document-parser/requirements-test.txt
+          cache-dependency-path: document-parser/requirements.txt
 
       - name: Install system dependencies
         run: sudo apt-get update && sudo apt-get install -y --no-install-recommends poppler-utils
@@ -35,8 +35,8 @@ jobs:
       - name: Install pinned dependencies
         run: |
           pip install --upgrade pip
-          pip install -r requirements-test.txt
-          pip install httpx
+          pip install -r requirements.txt
+          pip install pytest pytest-asyncio httpx
 
       - name: Upgrade docling to latest
         id: versions

.gitignore

@@ -49,3 +49,10 @@ profiles/
 
 # E2E tests — Maven build outputs & Chrome user data
 e2e/**/target/
+
+# Local-only artifacts (release/0.6.0 bootstrap)
+.github/ISSUE_TEMPLATE/issue.md
+docs/claude-code-commands.md
+docs/design/TEMPLATE.md
+document-parser/tests/test_local_converter.py
+

CHANGELOG.md

@@ -4,12 +4,6 @@ All notable changes to Docling Studio will be documented in this file.
 
 The format is based on [Keep a Changelog](https://keepachangelog.com/), and this project adheres to [Semantic Versioning](https://semver.org/).
 
-## [0.5.1] - 2026-04-30
-
-### Fixed
-
-- Nginx upload body cap raised from 5 MB to 200 MB (`NGINX_MAX_BODY_SIZE`, default `200M`); uploads larger than 5 MB no longer returned 413 before reaching the backend.
-
 ## [0.5.0] - 2026-04-28
 
 ### Added

Dockerfile

@@ -24,11 +24,10 @@ FROM python:3.12-slim AS base
 ARG APP_VERSION=dev
 ENV APP_VERSION=${APP_VERSION}
 
-# System deps: poppler (pdf2image), nginx, gettext-base (envsubst for nginx template)
+# System deps: poppler (pdf2image), nginx
 RUN apt-get update && apt-get install -y --no-install-recommends \
     poppler-utils \
     nginx \
-    gettext-base \
     && rm -rf /var/lib/apt/lists/*
 
 # Python deps (common)
@@ -42,8 +41,8 @@ COPY document-parser/ .
 # Frontend static files
 COPY --from=frontend-build /build/dist /usr/share/nginx/html
 
-# Nginx config (template stored outside sites-enabled to avoid nginx loading it raw)
-COPY nginx.conf.template /etc/nginx/default.template
+# Nginx config
+COPY nginx.conf /etc/nginx/sites-enabled/default
 
 # Non-root user
 RUN useradd --create-home --shell /bin/bash appuser
@@ -53,11 +52,10 @@ RUN mkdir -p /app/uploads /app/data && chown -R appuser:appuser /app
 
 ENV UPLOAD_DIR=/app/uploads
 ENV DB_PATH=/app/data/docling_studio.db
-ENV NGINX_MAX_BODY_SIZE=200M
 
 EXPOSE 3000
 
-CMD ["sh", "-c", "envsubst '${NGINX_MAX_BODY_SIZE}' < /etc/nginx/default.template > /etc/nginx/sites-enabled/default && nginx && exec su appuser -c 'uvicorn main:app --host 127.0.0.1 --port 8000'"]
+CMD ["sh", "-c", "nginx && exec su appuser -c 'uvicorn main:app --host 127.0.0.1 --port 8000'"]
 
 # --- Remote: lightweight, delegates to Docling Serve ---
 FROM base AS remote

README.md

@@ -210,7 +210,6 @@ All configuration is done via environment variables. See [`.env.example`](.env.e
 | `BATCH_PAGE_SIZE` | `10` | Pages per batch (`0` = process all at once) |
 | `MAX_FILE_SIZE_MB` | `50` | Maximum upload file size in MB (`0` = unlimited) |
 | `MAX_PAGE_COUNT` | `0` | Maximum number of pages per document (`0` = unlimited) |
-| `NGINX_MAX_BODY_SIZE` | `200M` | Nginx request body limit — nginx format (`200M`, `0` = unlimited). Must be ≥ `MAX_FILE_SIZE_MB`. |
 | `RATE_LIMIT_RPM` | `100` | Max requests per minute per IP (`0` = disabled) |
 
 ## Upload Limits
@@ -219,9 +218,8 @@ Docling Studio enforces configurable limits on uploaded documents to protect the
 
 - **`MAX_FILE_SIZE_MB`** (default `50`) — rejects uploads exceeding this size. Validated at two levels: early `Content-Length` check and streaming byte count.
 - **`MAX_PAGE_COUNT`** (default `0` = unlimited) — rejects documents with more pages than allowed. Useful on shared instances or Hugging Face Spaces to cap processing time.
-- **`NGINX_MAX_BODY_SIZE`** (default `200M`) — nginx-level body cap, applied before the request reaches the backend. Defaults to `200M` so `MAX_FILE_SIZE_MB` is always the effective limit. Use nginx format (`50M`, `1G`, `0` for unlimited).
 
-Both application limits are exposed in the `/api/health` endpoint so the frontend can display them to the user before upload. Set either to `0` to disable the corresponding check.
+Both limits are exposed in the `/api/health` endpoint so the frontend can display them to the user before upload. Set either to `0` to disable the corresponding check.
 
 ## Ingestion Pipeline (opt-in)
 

docker-compose.yml

@@ -117,8 +117,6 @@ services:
       context: ./frontend
     ports:
       - "3000:80"
-    environment:
-      NGINX_MAX_BODY_SIZE: ${NGINX_MAX_BODY_SIZE:-200M}
     depends_on:
       - document-parser
 

docs/design/202-document-lifecycle-state-machine.md

@@ -0,0 +1,292 @@
+# Design: Document lifecycle state machine
+
+- **Issue:** #202
+- **Title on issue:** [FEATURE] Introduce Document lifecycle state machine
+- **Author:** Pier-Jean Malandrino
+- **Date:** 2026-04-29
+- **Status:** Accepted
+- **Target milestone:** 0.6.0 — Doc-centric ingest
+- **Impacted layers:** backend: domain · persistence · services · api · frontend: features/document · shared
+- **Audit dimensions likely touched:** Hexagonal Architecture · DDD · Tests · Documentation
+- **ADR spawned?:** no
+
+---
+
+## 1. Problem
+
+Studio today tracks ingestion as a side-effect of an `AnalysisJob`. The only "state" a document carries is implicit — derived by joining the document with its latest analysis job (`PENDING`, `RUNNING`, `COMPLETED`, `FAILED`) and, separately, by checking whether OpenSearch holds rows for `doc_id`. There is no explicit, persisted lifecycle of the document itself.
+
+This blocks the 0.6.0 doc-centric pivot: we cannot show a document library `/docs` with status badges, we cannot tell the user "this doc is ingested but stale on store X", and we cannot drive a chunks editor that knows whether its draft is committed. Every later feature in E3, E4, and E5 reads or transitions a document state.
+
+This design introduces a first-class **document lifecycle** as a domain concept: a single canonical state on each document, validated transitions, persisted, and surfaced via the API.
+
+## 2. Goals
+
+- [ ] Add a `DocumentLifecycleState` enum to the domain with six states: `Uploaded`, `Parsed`, `Chunked`, `Ingested`, `Stale`, `Failed`.
+- [ ] `Document` carries `lifecycle_state` (current state) + `lifecycle_state_at` (last transition timestamp).
+- [ ] State transitions are validated in the domain layer; invalid transitions raise `InvalidLifecycleTransition`.
+- [ ] State changes emit a domain event `DocumentLifecycleChanged(previous, current, at)`.
+- [ ] Persisted via aiosqlite migration; existing rows default to `Uploaded` (refined by #206).
+- [ ] Surfaced on the document API DTO (camelCase: `lifecycleState`, `lifecycleStateAt`).
+
+## 3. Non-goals
+
+- Per-`(doc, store)` state — that is **#203** and uses a different table.
+- Auto-stale detection via hash — that is **#204**; this issue only declares the `Stale` state value.
+- UI rendering of the badge — that is **#215**.
+- Migrating production data — that is **#206**; this issue ships the schema + default value only.
+- Refactoring `AnalysisJob.status`. The two concepts coexist: `AnalysisJob.status` describes **a single conversion attempt**; `Document.lifecycle_state` describes **the doc as a whole**.
+
+## 4. Context & constraints
+
+### Existing code surface
+
+- `document-parser/domain/models.py` — `Document` dataclass (line 27), `AnalysisJob` (line 38), `AnalysisStatus` enum.
+- `document-parser/domain/value_objects.py` — value objects.
+- `document-parser/persistence/database.py` — `_MIGRATIONS` list and `_run_migrations()` checking PRAGMA `table_info()`.
+- `document-parser/persistence/document_repo.py` — `DocumentRepository` (aiosqlite).
+- `document-parser/api/documents.py` — REST endpoints.
+- `document-parser/api/schemas.py` — Pydantic DTOs with `alias_generator=_to_camel`.
+- `frontend/src/features/document/store.ts` and `api.ts`.
+
+### Hexagonal Architecture constraints (backend)
+
+- `DocumentLifecycleState` is a **value object** — it lives in `domain/value_objects.py` with zero imports from `api`/`persistence`/`infra`.
+- The transition rules are domain logic — they live as methods on `Document` (or a small `DocumentLifecycle` policy module in `domain/`). No HTTP, no DB.
+- `DocumentRepository` (the port) gains a write path for the new fields. The aiosqlite adapter is the only place that knows about the column.
+- API layer translates the enum to camelCase string via Pydantic.
+
+### Deployment modes
+
+Both `latest-local` and `latest-remote` images use the same SQLite schema → migration applies to both. No HF Space-specific concern. No feature flag (the lifecycle is always on; only UI surfaces are flagged).
+
+### Hard constraints
+
+- SQLite schema additive only. No column drops, no rename. New column has a `DEFAULT` so existing rows do not break on read.
+- API contract additive only. New fields appear; nothing is removed.
+- `pages_json` stays snake_case (existing exception).
+
+## 5. Proposed design
+
+### 5.1 Domain
+
+Add to `document-parser/domain/value_objects.py`:
+
+```python
+from enum import StrEnum
+
+class DocumentLifecycleState(StrEnum):
+    UPLOADED  = "Uploaded"
+    PARSED    = "Parsed"
+    CHUNKED   = "Chunked"
+    INGESTED  = "Ingested"
+    STALE     = "Stale"
+    FAILED    = "Failed"
+```
+
+Allowed transitions (a directed graph; `* → Failed` always allowed):
+
+```
+Uploaded  → Parsed | Failed
+Parsed    → Chunked | Failed
+Chunked   → Ingested | Chunked | Failed       # re-chunking is allowed
+Ingested  → Stale | Chunked | Failed          # re-ingest stays Ingested via 203
+Stale     → Ingested | Chunked | Failed
+Failed    → Uploaded | Parsed | Chunked       # explicit retry sets the new target
+```
+
+`Stale` is set by the auto-detect logic (#204) — never reached as a result of a manual action.
+
+Add to `document-parser/domain/models.py`:
+
+```python
+@dataclass
+class Document:
+    ...
+    lifecycle_state: DocumentLifecycleState = DocumentLifecycleState.UPLOADED
+    lifecycle_state_at: datetime | None = None
+
+    def transition_to(self, target: DocumentLifecycleState, *, now: datetime) -> "DocumentLifecycleChanged":
+        if not _is_allowed(self.lifecycle_state, target):
+            raise InvalidLifecycleTransition(self.lifecycle_state, target)
+        previous = self.lifecycle_state
+        self.lifecycle_state = target
+        self.lifecycle_state_at = now
+        return DocumentLifecycleChanged(self.id, previous, target, now)
+```
+
+`InvalidLifecycleTransition` lives in `domain/exceptions.py` (create if missing). `_is_allowed` is a pure function over a static transition table.
+
+`DocumentLifecycleChanged` is a frozen dataclass in `domain/events.py`. No event bus is wired in 0.6.0 — the event is *returned* from the transition call so services can log / persist / publish later. This avoids introducing infra in this issue.
+
+### 5.2 Persistence
+
+Schema migration appended to `_MIGRATIONS` in `document-parser/persistence/database.py`:
+
+```sql
+ALTER TABLE documents ADD COLUMN lifecycle_state TEXT NOT NULL DEFAULT 'Uploaded';
+ALTER TABLE documents ADD COLUMN lifecycle_state_at TEXT;
+CREATE INDEX IF NOT EXISTS idx_documents_lifecycle_state ON documents(lifecycle_state);
+```
+
+The `_run_migrations()` PRAGMA check ensures idempotency — re-running on an already-migrated DB is a no-op. The index supports the `/docs` library filter by status (#212).
+
+`DocumentRepository.save(doc)` and `update_lifecycle(doc_id, state, at)` are the two write paths. Read returns the columns directly populated into the dataclass.
+
+### 5.3 Infra adapters
+
+None. The lifecycle is database-only.
+
+### 5.4 Services
+
+`DocumentService` and `AnalysisService` are the two callers that drive transitions.
+
+| Trigger | From | To | Caller |
+|---|---|---|---|
+| Upload completes | — | `Uploaded` | `DocumentService.upload()` |
+| Parse succeeds | `Uploaded` (or `Failed` retry) | `Parsed` | `AnalysisService` |
+| Chunking succeeds | `Parsed` (or `Chunked` re-chunk) | `Chunked` | `AnalysisService` |
+| Ingestion succeeds | `Chunked` (or `Stale`) | `Ingested` | `IngestionService` (touched in #203) |
+| Failure on any pipeline step | any | `Failed` | the failing service |
+
+Transition calls are atomic with the underlying write (e.g., chunking writes `chunks_json` *and* transitions to `Chunked` in the same SQL transaction).
+
+### 5.5 API
+
+`DocumentResponse` (in `document-parser/api/schemas.py`) gains:
+
+```python
+class DocumentResponse(BaseModel):
+    ...
+    lifecycle_state: str = Field(serialization_alias="lifecycleState")
+    lifecycle_state_at: datetime | None = Field(default=None, serialization_alias="lifecycleStateAt")
+```
+
+No new endpoint. The existing `GET /api/documents` and `GET /api/documents/{id}` start returning the two fields. No 4xx removal — purely additive.
+
+`POST /api/documents/{id}/lifecycle` is **not** added in this issue; transitions are driven by pipeline events, not by the user.
+
+### 5.6 Frontend — feature module
+
+Touched: `frontend/src/features/document/`.
+
+- `api.ts` — bump the `Document` type with `lifecycleState: DocumentLifecycleState` and `lifecycleStateAt: string | null`.
+- `store.ts` — store retains the new fields as-is.
+- No UI work — that is #211 / #215. This issue ships the typed surface only so #211 can render against it.
+
+`shared/types.ts` gains a re-exported `DocumentLifecycleState` union literal type matching the backend enum.
+
+### 5.7 Cross-cutting
+
+- No feature flag. The lifecycle is permanent infrastructure.
+- i18n: tooltip strings for the six states are added in `shared/i18n.ts`, keyed `lifecycle.<state>`. Used by #215.
+
+## 6. Alternatives considered
+
+### Alternative A — Reuse `AnalysisJob.status`
+
+- **Summary:** Promote `AnalysisJob.status` to the document's state, removing the separate `Document.lifecycle_state`.
+- **Why not:** `AnalysisJob` has a 1:N relationship with `Document` (a doc can be re-analyzed). The status of the *latest* job is not the same thing as the lifecycle of the *document*. It also conflates parse/chunk/ingest into one state machine, which #202–#205 explicitly want to separate.
+
+### Alternative B — Computed state, no column
+
+- **Summary:** Derive the state on-the-fly from analysis-job rows + OpenSearch presence.
+- **Why not:** Joining + remote calls on every document list query is too expensive for `/docs` with 1k+ rows. A persisted column lets us index it for the filter (#212). The cost of denormalisation is one extra write per pipeline step.
+
+## 7. API & data contract
+
+### Endpoints
+
+| Method | Path | Request | Response | Breaking? |
+|--------|------|---------|----------|-----------|
+| GET | `/api/documents` | — | `DocumentResponse[]` (now with `lifecycleState`, `lifecycleStateAt`) | No (additive) |
+| GET | `/api/documents/{id}` | — | `DocumentResponse` (now with `lifecycleState`, `lifecycleStateAt`) | No (additive) |
+
+### Persistence schema
+
+```sql
+ALTER TABLE documents ADD COLUMN lifecycle_state TEXT NOT NULL DEFAULT 'Uploaded';
+ALTER TABLE documents ADD COLUMN lifecycle_state_at TEXT;
+CREATE INDEX IF NOT EXISTS idx_documents_lifecycle_state ON documents(lifecycle_state);
+```
+
+Existing rows default to `Uploaded`; #206 refines them.
+
+### Env vars / config
+
+None.
+
+### Breaking changes
+
+Additive only.
+
+## 8. Risks & mitigations
+
+| Risk | Audit dimension | Likelihood | Impact | How we notice | Mitigation / rollback |
+|------|-----------------|------------|--------|---------------|------------------------|
+| Drift between `lifecycle_state` and the actual pipeline state (e.g. crash mid-write leaves `Chunked` recorded but no chunks) | DDD | Medium | Medium | Failed `/docs` rendering; tests catch on integration | Wrap the data write + transition in a single SQL transaction; never write the transition before the data |
+| Existing migrations break on environments mid-flight | CI/Build | Low | High | Migration test on a snapshot DB | The migration is purely additive (`ADD COLUMN ... DEFAULT`) — safe to apply on any version |
+| Confusion between `AnalysisJob.status` and `Document.lifecycle_state` for newcomers | Documentation | High | Low | Reviews ask | A short paragraph in `docs/architecture.md` describing the two concepts side by side |
+| `Failed` state without a known reason makes debugging harder | Tests / Documentation | Medium | Medium | Operator complaints | The transition payload carries an optional `reason: str` persisted in a small JSON column or in the analysis-job's `error_message` |
+
+## 9. Testing strategy
+
+### Backend — pytest (`document-parser/tests/`)
+
+- **Unit (`tests/domain/`):**
+  - `test_lifecycle_transitions.py` — table-driven test of every (from, to) pair: allowed → updates state, disallowed → raises `InvalidLifecycleTransition`.
+  - `test_lifecycle_event.py` — successful transition returns the right `DocumentLifecycleChanged` event.
+- **Persistence (`tests/persistence/`):**
+  - `test_document_repo_lifecycle.py` — write a doc, read it back, lifecycle fields round-trip; default value is `Uploaded`; index exists.
+- **Services / integration:**
+  - `test_analysis_service_transitions.py` — parse pipeline drives `Uploaded → Parsed`; chunking drives `Parsed → Chunked`; failure → `Failed`.
+
+### Frontend — Vitest
+
+- `features/document/api.test.ts` — DTO parses `lifecycleState` correctly into the typed enum.
+- `features/document/store.test.ts` — store exposes `lifecycleState` on the cached document.
+
+### E2E — Karate UI
+
+Out of scope for this issue. E2E coverage lands with #211 (the library page that renders the badge).
+
+### Manual QA
+
+1. `docker compose -f docker-compose.dev.yml up`.
+2. Upload a doc → `GET /api/documents/{id}` returns `"lifecycleState": "Uploaded"`.
+3. Run analysis → state becomes `"Parsed"` then `"Chunked"`.
+4. Force a failure (corrupt PDF) → state becomes `"Failed"`.
+
+## 10. Rollout & observability
+
+### Release branch
+
+`release/0.6.0` (this work).
+
+### Feature flag / staged rollout
+
+None. Lifecycle persistence is always on; UI surfaces are flagged separately (per #210).
+
+### Observability
+
+- Each transition is logged at `INFO` with structured keys: `event=lifecycle_changed doc_id=<id> from=<state> to=<state>`.
+- No new Prometheus counter in this issue (added in #211 if useful for the library page).
+
+### Rollback plan
+
+The migration is additive. Reverting the code (without dropping the column) leaves the column populated but unused — safe. If the column itself must go, write a follow-up migration; SQLite supports column drop since 3.35 and we run a recent enough version.
+
+## 11. Open questions
+
+- Should we record the `reason` for `Failed` transitions on the document directly, or rely on the linked `AnalysisJob.error_message`? **Decision for 0.6.0:** rely on `AnalysisJob.error_message`; revisit if multiple non-analysis sources of failure emerge.
+- Do we want a typed `DocumentLifecycleEvent` table for audit, or are logs enough? **Decision:** logs only in 0.6.0; #205's `chunk_edits` table is the audit substrate, doc-level events can be added later if needed.
+
+## 12. References
+
+- **Issue:** https://github.com/scub-france/Docling-Studio/issues/202
+- **Related issues:** #203 (per-store state), #204 (auto-stale), #205 (audit trail), #206 (migration), #211 (library), #215 (status badges)
+- **ADRs:** none planned
+- **Project docs:**
+  - Architecture: `docs/architecture.md`
+  - Coding standards: `docs/architecture/coding-standards.md`
+  - Audit master: `docs/audit/master.md`

docs/design/203-per-store-ingestion-state.md

@@ -0,0 +1,329 @@
+# Design: Per (document, store) ingestion state
+
+- **Issue:** #203
+- **Title on issue:** [FEATURE] Track ingestion state per (document, store) pair
+- **Author:** Pier-Jean Malandrino
+- **Date:** 2026-04-29
+- **Status:** Accepted
+- **Target milestone:** 0.6.0 — Doc-centric ingest
+- **Impacted layers:** backend: domain · persistence · services · api · infra · frontend: features/ingestion · features/document · shared
+- **Audit dimensions likely touched:** Hexagonal Architecture · DDD · Decoupling · Tests · Documentation
+- **ADR spawned?:** ADR-NNN — "Multiple vector stores as first-class entities"
+
+---
+
+## 1. Problem
+
+In the current architecture, "the vector store" is a single OpenSearch index hard-coded to `docling-studio-chunks`. Documents either are or are not indexed in that one place. The new doc-centric model assumes documents can live in **multiple stores** simultaneously — `rh-corpus-v3`, `legal-v1`, a snapshot for a customer A/B — and each `(doc, store)` pair has its own state.
+
+This is also where the killer flow lives: a customer reports bad answers from a specific store; the eng opens the doc, sees that it is `Ingested` in `rh-corpus-v3` and `Stale` in `rh-corpus-v2`, fixes the chunks, and re-ingests **the right one**. Without a per-pair state, that flow is impossible.
+
+## 2. Goals
+
+- [ ] Introduce a `Store` entity in the domain (id, name, kind, config, embedder).
+- [ ] Introduce a `DocumentStoreLink` entity tying a document to a store with its own state and metadata.
+- [ ] States on the link: `Ingested`, `Stale`, `Failed`. (No `Uploaded`/`Parsed`/`Chunked` — those are doc-level only.)
+- [ ] The `Document.lifecycle_state` (#202) aggregates the per-store states by a documented rule.
+- [ ] API exposes the per-store list on the document DTO.
+- [ ] One default `Store` row is seeded on first migration so existing single-index deployments keep working.
+
+## 3. Non-goals
+
+- Auto-stale detection logic — that is **#204**; this issue ships the schema slot for the content hash but not the detection.
+- Multi-tenant isolation between stores — the existing tenant model (if any) is not changed; stores are global today.
+- A UI to create/manage stores — that is a follow-up. For 0.6.0 we ship the data model and the seed; a single store is enough for the killer flow on a single tenant.
+- Cross-doc bulk re-ingest — that is **#213**; this issue exposes the per-link state needed by it.
+
+## 4. Context & constraints
+
+### Existing code surface
+
+- `document-parser/domain/ports.py` — `VectorStore` protocol (line 124).
+- `document-parser/infra/opensearch_store.py` — `OpenSearchStore` adapter.
+- `document-parser/services/ingestion_service.py` — `IngestionService.ingest()` and `ensure_index()`.
+- `document-parser/persistence/database.py` — schema + migrations.
+- `document-parser/api/ingestion.py` — endpoints.
+- `frontend/src/features/ingestion/` — Pinia store + API client.
+
+### Hexagonal Architecture constraints (backend)
+
+- `Store` and `DocumentStoreLink` are domain entities (`domain/models.py`). Pure data + invariants. No ORM concern.
+- `StoreRepository` and `DocumentStoreLinkRepository` are ports (`domain/ports.py`).
+- aiosqlite adapters live in `persistence/store_repo.py` and `persistence/document_store_link_repo.py`.
+- The existing `VectorStore` port stays — it represents the **technology** (OpenSearch). The new `Store` entity represents the **logical store** (a named, configurable target). One `VectorStore` adapter can serve many `Store` entities by namespacing the index name.
+
+### Deployment modes
+
+- Single `OpenSearchStore` adapter handles all stores via per-store `index_name = f"docling-studio-{store.slug}"`. Existing default index gets migrated to `docling-studio-default` (with a redirect alias to keep backwards-compatible reads).
+- HF Space deployment ships with the same one-store seed.
+
+### Hard constraints
+
+- Existing OpenSearch index must remain readable during migration; reads against the legacy name are aliased.
+- API is additive: existing `/api/ingestion/{analysis_id}` keeps working with an implicit default-store target until the UI explicitly picks one (#222).
+- Tests must not require a real OpenSearch instance for the link layer — repo tests stub the adapter.
+
+## 5. Proposed design
+
+### 5.1 Domain
+
+`document-parser/domain/value_objects.py`:
+
+```python
+class StoreKind(StrEnum):
+    OPENSEARCH = "opensearch"
+    # future: PINECONE, QDRANT, …
+
+class DocumentStoreLinkState(StrEnum):
+    INGESTED = "Ingested"
+    STALE    = "Stale"
+    FAILED   = "Failed"
+```
+
+`document-parser/domain/models.py`:
+
+```python
+@dataclass
+class Store:
+    id: str
+    name: str            # "rh-corpus-v3"
+    slug: str            # "rh-corpus-v3"  (URL-safe; usually = name)
+    kind: StoreKind
+    embedder: str        # e.g. "bge-m3" — record the embedder used for this store
+    config: dict         # adapter-specific config (index_name override, etc.)
+    created_at: datetime
+    is_default: bool
+
+@dataclass
+class DocumentStoreLink:
+    id: str
+    document_id: str
+    store_id: str
+    state: DocumentStoreLinkState
+    chunkset_hash: str | None    # set by #204 on push
+    last_push_at: datetime | None
+    last_run_id: str | None      # FK to a future runs table; nullable in 0.6.0
+    error_message: str | None    # populated on FAILED state
+
+    def mark_ingested(self, *, hash_: str, at: datetime, run_id: str | None) -> None: ...
+    def mark_stale(self, *, at: datetime) -> None: ...
+    def mark_failed(self, *, at: datetime, error: str) -> None: ...
+```
+
+Aggregation rule for `Document.lifecycle_state` (defined as a pure function in `domain/lifecycle_aggregation.py`):
+
+```
+if any link state == FAILED         → Document is FAILED
+elif any link state == STALE        → Document is STALE
+elif any link state == INGESTED     → Document is INGESTED
+elif chunks present (state Chunked) → Document keeps its current state
+else                                → keep current state
+```
+
+The aggregation runs as a side effect of any link write. The doc's own state column (#202) is the materialized result; it is not recomputed at read time.
+
+### 5.2 Persistence
+
+```sql
+CREATE TABLE IF NOT EXISTS stores (
+    id          TEXT PRIMARY KEY,
+    name        TEXT NOT NULL UNIQUE,
+    slug        TEXT NOT NULL UNIQUE,
+    kind        TEXT NOT NULL,
+    embedder    TEXT NOT NULL,
+    config      TEXT NOT NULL DEFAULT '{}',  -- JSON
+    is_default  INTEGER NOT NULL DEFAULT 0,
+    created_at  TEXT NOT NULL
+);
+
+CREATE TABLE IF NOT EXISTS document_store_links (
+    id              TEXT PRIMARY KEY,
+    document_id     TEXT NOT NULL REFERENCES documents(id) ON DELETE CASCADE,
+    store_id        TEXT NOT NULL REFERENCES stores(id)    ON DELETE CASCADE,
+    state           TEXT NOT NULL,
+    chunkset_hash   TEXT,
+    last_push_at    TEXT,
+    last_run_id     TEXT,
+    error_message   TEXT,
+    UNIQUE (document_id, store_id)
+);
+
+CREATE INDEX IF NOT EXISTS idx_dsl_doc      ON document_store_links(document_id);
+CREATE INDEX IF NOT EXISTS idx_dsl_store    ON document_store_links(store_id);
+CREATE INDEX IF NOT EXISTS idx_dsl_state    ON document_store_links(state);
+```
+
+Seed migration inserts one row in `stores`:
+
+```sql
+INSERT OR IGNORE INTO stores (id, name, slug, kind, embedder, is_default, created_at)
+VALUES ('default', 'default', 'default', 'opensearch',
+        '<env: DEFAULT_EMBEDDER, fallback bge-m3>',
+        1, datetime('now'));
+```
+
+The OpenSearch index name for `slug=default` is `docling-studio-default`. To keep existing data readable, an alias migration in `OpenSearchStore.ensure_index()` adds `docling-studio-chunks` as a read-only alias to `docling-studio-default` if the legacy index exists with rows. Operators with non-trivial data trigger a one-shot reindex via #206.
+
+### 5.3 Infra adapters
+
+`OpenSearchStore` is parameterised by store slug:
+
+```python
+class OpenSearchStore(VectorStore):
+    def __init__(self, client, index_prefix: str = "docling-studio") -> None: ...
+    def _index_for(self, store_slug: str) -> str:
+        return f"{self.index_prefix}-{store_slug}"
+```
+
+Calls become `index_chunks(store_slug, doc_id, chunks, embeddings)` etc. The protocol in `domain/ports.py` is updated to take `store_slug` as an explicit argument.
+
+### 5.4 Services
+
+New: `StoreService` (`document-parser/services/store_service.py`) — list, get, create (admin only — locked behind a future flag; for 0.6.0 only seeded rows exist).
+
+`IngestionService.ingest(analysis_id, store_slug = "default")`:
+1. Read chunks from `analysis_jobs.chunks_json`.
+2. Compute embeddings.
+3. Call adapter `index_chunks(store_slug, ...)`.
+4. Upsert link via `DocumentStoreLinkRepository.upsert(doc_id, store_id, state=Ingested, chunkset_hash=..., at=now)`.
+5. Recompute document aggregate state via the rule in §5.1.
+
+If any step fails: link is marked `Failed` with the error; doc state aggregates to `Failed`.
+
+### 5.5 API
+
+`schemas.py`:
+
+```python
+class StoreLinkResponse(BaseModel):
+    storeId: str
+    storeName: str
+    state: str                        # DocumentStoreLinkState value
+    chunksetHash: str | None
+    lastPushAt: datetime | None
+    lastRunId: str | None
+
+class DocumentResponse(BaseModel):
+    ...                               # from #202
+    stores: list[StoreLinkResponse] = Field(default_factory=list)
+```
+
+`stores` is a read-side aggregate computed by `DocumentService.find_by_id()` joining the link table.
+
+New endpoint `GET /api/stores` returns the list of stores (id, name, slug, embedder). Used by #222's target picker.
+
+### 5.6 Frontend — feature module
+
+- `frontend/src/features/ingestion/` — `Ingestion.run()` accepts an optional `storeSlug`; defaults to "default" if not supplied.
+- New `frontend/src/features/stores/` — Pinia store, API client, types.
+- `frontend/src/features/document/api.ts` — `Document` type gains `stores: StoreLink[]`.
+
+### 5.7 Cross-cutting
+
+- Feature flag: none.
+- i18n: `stores.state.<state>` keys in `shared/i18n.ts`.
+- New env var documented in `.env.example`: `DEFAULT_EMBEDDER` (existing implicitly; now formalised in the seed).
+
+## 6. Alternatives considered
+
+### Alternative A — One row per (doc, store) embedded in the analysis job
+
+- **Summary:** Add a JSON column `stores_json` on `analysis_jobs`.
+- **Why not:** Conflates an *analysis attempt* with a *long-lived ingestion link*. Re-analysis would erase per-store state. The relational shape is necessary for filters, indexes, and idempotent updates.
+
+### Alternative B — One adapter per store (parallel `VectorStore` instances)
+
+- **Summary:** Hold a registry of `VectorStore` adapters keyed by store id.
+- **Why not:** Duplicates connection pools, breaks singleton pattern in FastAPI's dependency wiring, and forces N OpenSearch clients for what is logically one client serving N indexes. Parameterising the existing single adapter is cheaper.
+
+## 7. API & data contract
+
+### Endpoints
+
+| Method | Path | Request | Response | Breaking? |
+|--------|------|---------|----------|-----------|
+| GET | `/api/documents/{id}` | — | now includes `stores: StoreLinkResponse[]` | No (additive) |
+| GET | `/api/stores` | — | `StoreResponse[]` | No (new) |
+| POST | `/api/ingestion/{analysis_id}` | `{ "storeSlug": "default" }` (optional) | unchanged | No (additive) |
+
+### Persistence schema
+
+See §5.2.
+
+### Env vars / config
+
+| Name | Default | Allowed | Notes |
+|------|---------|---------|-------|
+| `DEFAULT_EMBEDDER` | `bge-m3` | any registered embedder slug | recorded on the seeded `default` store |
+| `DOCLING_STUDIO_INDEX_PREFIX` | `docling-studio` | URL-safe slug | adapter-level prefix for OpenSearch indexes |
+
+### Breaking changes
+
+Additive.
+
+## 8. Risks & mitigations
+
+| Risk | Audit dimension | Likelihood | Impact | How we notice | Mitigation / rollback |
+|------|-----------------|------------|--------|---------------|------------------------|
+| Existing OpenSearch data invisible after rename | Decoupling | Medium | High | Smoke test on staging | Read alias `docling-studio-chunks → docling-studio-default` set in `ensure_index()`; explicit reindex documented in runbook |
+| Multiple stores with conflicting embedders mixed at search time | Security/Performance | Low | Medium | Mismatched dim error from OpenSearch | Embedder is recorded per store; queries route by store; cross-store search is out of scope for 0.6.0 |
+| Link table grows large over time on prod corpus | Performance | Medium | Medium | Slow `/api/documents/{id}` join | Index on `document_id` and `store_id`; pagination on the doc list (#211) |
+| Aggregation rule drifts from per-store reality on partial writes | DDD | Medium | High | Tests fail | Aggregation runs in the same transaction as the link write |
+
+## 9. Testing strategy
+
+### Backend — pytest
+
+- **Unit (domain):** `test_store_link_transitions.py`, `test_lifecycle_aggregation.py` (table-driven over per-store state combinations).
+- **Persistence:** `test_store_repo.py`, `test_document_store_link_repo.py` (round-trip; UNIQUE constraint enforced; cascade delete works).
+- **Services / integration:** `test_ingestion_service_with_store.py` (default store path), `test_ingestion_service_two_stores.py` (push to two stores → two links).
+- **Architecture:** import-boundary test ensures `domain/` does not import `infra/opensearch_store.py`.
+
+### Frontend — Vitest
+
+- `features/stores/api.test.ts` — list endpoint round-trip.
+- `features/document/store.test.ts` — `Document.stores` populated from API.
+
+### E2E — Karate UI
+
+Out of scope here. Lands with #211 / #218.
+
+### Manual QA
+
+1. Boot. `GET /api/stores` returns the seeded `default`.
+2. Upload a doc, run ingestion → `GET /api/documents/{id}` returns `stores[0].state == "Ingested"`.
+3. Inspect SQLite: `document_store_links` has the row.
+
+## 10. Rollout & observability
+
+### Release branch
+
+`release/0.6.0`.
+
+### Feature flag
+
+None for the data; #222 will gate the multi-store UI.
+
+### Observability
+
+- Log `store_link_changed` with `doc_id`, `store_id`, `from`, `to`, `at`.
+- Counter (Prometheus, future): `ingestion_links_total{state}`. Optional in 0.6.0.
+
+### Rollback plan
+
+The migration is additive. To roll back the code: revert; the unused tables stay empty for new docs but contain rows for already-pushed docs — harmless (no read path uses them after revert). For full cleanup, a follow-up migration drops the two tables.
+
+## 11. Open questions
+
+- Should `Store.config` be typed in the domain (via a discriminated union on `kind`)? **Decision for 0.6.0:** keep as opaque `dict`; introduce a typed wrapper when we add a second `kind`.
+- Cross-store search (single query → many stores) — **explicitly punted** to a later release.
+
+## 12. References
+
+- **Issue:** https://github.com/scub-france/Docling-Studio/issues/203
+- **Related issues:** #202 (lifecycle), #204 (hash), #205 (audit), #206 (migration), #211 (library), #213 (bulk push), #222 (push UI), #223 (diff-aware ingest)
+- **ADRs:** ADR — "Multiple vector stores as first-class entities" (to be drafted alongside the implementation PR)
+- **Project docs:**
+  - Architecture: `docs/architecture.md`
+  - Coding standards: `docs/architecture/coding-standards.md`
+  - ADR guide: `docs/architecture/adr-guide.md`

docs/design/204-auto-stale-chunk-hash.md

@@ -0,0 +1,265 @@
+# Design: Auto-detect Stale state via chunk content hash
+
+- **Issue:** #204
+- **Title on issue:** [FEATURE] Auto-detect Stale state via chunk content hash
+- **Author:** Pier-Jean Malandrino
+- **Date:** 2026-04-29
+- **Status:** Accepted
+- **Target milestone:** 0.6.0 — Doc-centric ingest
+- **Impacted layers:** backend: domain · persistence · services · frontend (read-only)
+- **Audit dimensions likely touched:** Hexagonal Architecture · DDD · Performance · Tests · Security
+- **ADR spawned?:** no
+
+---
+
+## 1. Problem
+
+Without auto-detection, a user who edits a chunk has to remember which stores hold the doc and click "re-ingest" everywhere. They will forget. The next query against the stale store returns the old embedding, and the customer reports "I fixed it yesterday and it's still wrong". Manual flagging is a bug factory.
+
+The detection contract is: **the system, not the user, knows when a stored chunkset diverges from the current draft chunkset.** Implementation = a deterministic hash recorded at push time and compared on read or on chunk write.
+
+## 2. Goals
+
+- [ ] Define a deterministic `chunkset_hash(chunks: list[ChunkResult])` function.
+- [ ] Store the hash on each `DocumentStoreLink` at push time (#203 ships the column slot).
+- [ ] On any chunk modification, recompute the current chunkset hash and compare against each link; if mismatch, mark the link `Stale` and re-aggregate the document state.
+- [ ] On document read (single-doc API), compare on the fly as a safety net so older drift is caught.
+- [ ] Unit tests prove: edit a chunk → link state becomes `Stale`; re-push → link state becomes `Ingested` with the new hash.
+
+## 3. Non-goals
+
+- Per-chunk change tracking — that's the audit trail (#205); this issue cares about the *aggregate* hash only.
+- Background sweeper job that scans the whole corpus for drift — for 0.6.0, detection is event-driven (on chunk write) + on-read; a sweeper can come later.
+- Diff-aware re-ingest at the chunk granularity — that's #223; this issue tells you *whether* a re-ingest is needed, not which chunks to re-embed.
+- A user-facing toggle to "force stale" — out of scope.
+
+## 4. Context & constraints
+
+### Existing code surface
+
+- `document-parser/domain/value_objects.py` — `ChunkResult` (line 93).
+- `document-parser/services/analysis_service.py` — chunking pipeline.
+- `document-parser/persistence/database.py` — `analysis_jobs.chunks_json` (the canonical chunkset today).
+- `document-parser/services/ingestion_service.py` — push pipeline.
+- `document-parser/api/ingestion.py` — push endpoint.
+- `document-parser/persistence/document_store_link_repo.py` (created by #203).
+
+### Hexagonal Architecture constraints
+
+- `chunkset_hash` is a **pure domain function** — lives in `domain/hashing.py`. No I/O. No timestamps. Deterministic over the input.
+- Detection (compare + transition) is orchestrated in services. Persistence reads the stored hash via the link repo.
+- The hash is opaque to API/frontend in 0.6.0; surfaced only as a debug field on `StoreLinkResponse` (#203 added it).
+
+### Hard constraints
+
+- Hash function must be **stable across processes / machines / Python versions** — so SHA-256 (`hashlib`), not Python `hash()`. No salt.
+- Must be cheap on a 500-chunk doc — a single linear pass, no JSON re-parse on hot path.
+- Result is a hex string, length 64. Stored as `TEXT` in SQLite.
+
+## 5. Proposed design
+
+### 5.1 Domain
+
+`document-parser/domain/hashing.py`:
+
+```python
+import hashlib
+import json
+from collections.abc import Iterable
+from .value_objects import ChunkResult
+
+def chunkset_hash(chunks: Iterable[ChunkResult]) -> str:
+    """
+    Deterministic hash over a chunkset.
+
+    Hashed inputs (per chunk, in chunkset order):
+      - text             (str)
+      - source_page      (int | None)
+      - headings         (list[str], preserved order)
+
+    Excluded:
+      - bboxes / doc_items (rendering artefacts; do not affect retrieval semantics)
+      - token_count        (derived; unstable across tokenizers)
+    """
+    h = hashlib.sha256()
+    for chunk in chunks:
+        payload = {
+            "t": chunk.text,
+            "p": chunk.source_page,
+            "h": list(chunk.headings or []),
+        }
+        h.update(b"\x1f")
+        h.update(json.dumps(payload, ensure_ascii=False, separators=(",", ":")).encode())
+    return h.hexdigest()
+```
+
+Notes:
+- The `\x1f` (Unit Separator) byte between chunks defends against the "join attack" where chunk A's tail and chunk B's head produce the same hash as chunk A+B merged.
+- `separators=(",", ":")` is the canonical compact JSON form.
+- The exclusion list is intentional and documented inline — changing it bumps every doc to `Stale` once and is a deliberate one-time event (covered in §10 Rollback).
+
+`detect_stale_links(current_hash, links) -> list[DocumentStoreLink]` — pure helper returning the subset of links whose `chunkset_hash != current_hash`.
+
+### 5.2 Persistence
+
+No new schema. The `chunkset_hash` column was added by #203 on `document_store_links`.
+
+A new index supports the on-read safety net:
+
+```sql
+CREATE INDEX IF NOT EXISTS idx_dsl_doc_state ON document_store_links(document_id, state);
+```
+
+### 5.3 Infra adapters
+
+None. Hashing is in-memory.
+
+### 5.4 Services
+
+Two call sites:
+
+**A. On chunk write (event-driven detection)**
+
+`AnalysisService.persist_chunks(doc_id, chunks)`:
+1. Persist chunks (existing path: `analysis_jobs.chunks_json`).
+2. Compute `current_hash = chunkset_hash(chunks)`.
+3. Read all `DocumentStoreLink` rows for `doc_id`.
+4. For each link with `chunkset_hash != current_hash` and `state in (Ingested,)`:
+   - `link.mark_stale(at=now)` and persist.
+5. Re-aggregate the document state (#202).
+
+This runs in the same transaction as the chunk write. The full pass is O(N_links) which is small (a doc rarely lives in more than a handful of stores).
+
+**B. On push completion (set the new hash)**
+
+Already covered by #203's `IngestionService.ingest`. Add the `current_hash` argument when calling `link.mark_ingested(hash_=current_hash, at=now, run_id=...)`.
+
+**C. On read (safety net)**
+
+`DocumentService.find_by_id(id)`:
+1. Fetch document + links (existing).
+2. Compute `current_hash` (cheap; cached per request).
+3. Mark any `Ingested` link with mismatched hash as `Stale` and persist (best-effort, swallowed if write fails — log).
+
+This guards against drift caused by direct DB writes / restored backups / older deploys.
+
+### 5.5 API
+
+No new endpoint. `StoreLinkResponse.chunksetHash` (already added by #203) is now actually populated.
+
+### 5.6 Frontend — feature module
+
+No changes in this issue. #224 (stale indicator) reads the existing field.
+
+### 5.7 Cross-cutting
+
+- Feature flag: none.
+- Logs: `INFO event=stale_detected doc_id=<id> store_id=<id> previous_hash=<8> current_hash=<8>` (truncated for privacy / log volume).
+- ADR: not required. The choice of SHA-256 + canonical JSON is documented inline in `hashing.py`.
+
+## 6. Alternatives considered
+
+### Alternative A — Per-chunk hashes only (no chunkset hash)
+
+- **Summary:** Skip the aggregate hash; track each chunk's hash and detect "any per-chunk hash drift".
+- **Why not:** Per-chunk hashing is needed for #223 (diff-aware re-embed) but not for "is this link stale at all?". A single `chunkset_hash` is one-comparison cheap; per-chunk is N-comparisons. Both will exist after #223 lands; this issue ships the cheap top-level signal.
+
+### Alternative B — Store updated_at instead of hash
+
+- **Summary:** Compare `chunks.updated_at > link.last_push_at`.
+- **Why not:** Brittle. Re-running a pipeline on identical input bumps `updated_at` without semantic change. Hash is content-addressed and survives idempotent rewrites.
+
+### Alternative C — MD5 / xxHash
+
+- **Summary:** Use a faster non-cryptographic hash.
+- **Why not:** SHA-256 is fast enough on the volumes in scope (`<500 chunks`, microseconds in CPython hashlib via OpenSSL bindings). The cryptographic hash also gives us collision resistance for free. xxHash would require an extra dependency.
+
+## 7. API & data contract
+
+### Endpoints
+
+No additions. Existing `StoreLinkResponse.chunksetHash` becomes populated.
+
+### Persistence schema
+
+```sql
+CREATE INDEX IF NOT EXISTS idx_dsl_doc_state ON document_store_links(document_id, state);
+```
+
+### Env vars / config
+
+None.
+
+### Breaking changes
+
+None.
+
+## 8. Risks & mitigations
+
+| Risk | Audit dimension | Likelihood | Impact | How we notice | Mitigation / rollback |
+|------|-----------------|------------|--------|---------------|------------------------|
+| Hash function changes (e.g. someone adds `bboxes` to the input) silently invalidates every link | DDD | Medium | High | Every doc flips to `Stale` post-deploy | Hash function is in a single file with a docstring listing the canonical inputs; CI fixture asserts a fixed hash for a known chunkset. Bumping requires updating the fixture deliberately. |
+| Read-side detection updates state under a GET (write-on-read) | Performance / Decoupling | Low | Medium | Slow / unexpected SQL in read paths | Best-effort, swallowed write; only triggered when the API actually serves the doc detail page (already a write-allowed code path). Disabled if a query param `?refresh=false` is set (future). |
+| Unicode normalization issues (NFC vs NFD) produce different hashes for "the same" text | Tests | Low | Medium | Drift after a copy-paste from a Mac | Document the policy: text is stored as-is, no normalization; if drift appears, normalize at write time, not at hash time. |
+| JSON ordering instability across Python versions | Tests | Low | High | Hash mismatch on different prod nodes | `separators=(",", ":")` + `ensure_ascii=False` + explicit key order in the dict literal. Reviewer checklist mentions this. |
+
+## 9. Testing strategy
+
+### Backend — pytest
+
+- **Unit (domain):**
+  - `test_chunkset_hash_determinism.py` — same input → same output across multiple invocations.
+  - `test_chunkset_hash_sensitivity.py` — every input field in the canonical list changes the hash; excluded fields (`bboxes`, `token_count`) do not.
+  - `test_chunkset_hash_join_attack.py` — separating into different chunks must produce different hash from concatenation.
+  - **Locked fixture** `test_chunkset_hash_fixture.py` — a hand-built 3-chunk input whose hash is hard-coded; CI fails if anyone changes the function silently.
+- **Services:**
+  - `test_stale_detection_on_edit.py` — edit a chunk → link state becomes `Stale`.
+  - `test_stale_clears_on_repush.py` — re-push → link state becomes `Ingested` with the new hash.
+  - `test_stale_safety_net_on_read.py` — direct DB tampering → next read flips state to `Stale`.
+
+### Frontend — Vitest
+
+None new in this issue.
+
+### E2E — Karate UI
+
+Out of scope here; lands with #224.
+
+### Manual QA
+
+1. Push a doc to the default store → `chunksetHash` populated, `state == "Ingested"`.
+2. Edit a chunk via API → `state == "Stale"`.
+3. Re-push → `state == "Ingested"`, new hash.
+
+## 10. Rollout & observability
+
+### Release branch
+
+`release/0.6.0`.
+
+### Feature flag
+
+None. Detection is always on; cheap; correctness improvement.
+
+### Observability
+
+- Log lines as in §5.7.
+- One-time bump scenario: if we ever change the canonical input list, every link will flip to `Stale` once. That is a deliberate decision; the operator must be informed via release notes, and a one-shot reindex job is recommended (out of scope here).
+
+### Rollback plan
+
+The migration is additive (a new index). Reverting the code leaves the existing `chunkset_hash` column populated but unused — harmless. The index can be dropped in a follow-up.
+
+## 11. Open questions
+
+- Should the safety-net read-side check be opt-in via a query param? **Decision:** always-on for 0.6.0; revisit if the cost shows up in profiles.
+- Should headings include the *path* (parent → leaf) or just the leaf? **Decision:** the full ordered list as it sits on `ChunkResult.headings`. If the source mutates the list semantics, that is a separate domain concern.
+
+## 12. References
+
+- **Issue:** https://github.com/scub-france/Docling-Studio/issues/204
+- **Related issues:** #202 (lifecycle), #203 (per-store state), #205 (audit), #206 (migration), #223 (diff-aware re-ingest), #224 (stale indicator)
+- **ADRs:** none planned
+- **Project docs:**
+  - Architecture: `docs/architecture.md`
+  - Coding standards: `docs/architecture/coding-standards.md`

docs/design/205-chunk-edits-audit-trail.md

@@ -0,0 +1,372 @@
+# Design: Audit trail for chunk edits
+
+- **Issue:** #205
+- **Title on issue:** [FEATURE] Audit trail for chunk edits (who, when, before/after)
+- **Author:** Pier-Jean Malandrino
+- **Date:** 2026-04-29
+- **Status:** Accepted
+- **Target milestone:** 0.6.0 — Doc-centric ingest
+- **Impacted layers:** backend: domain · persistence · services · api · frontend: features/chunking · shared
+- **Audit dimensions likely touched:** Hexagonal Architecture · DDD · Tests · Security · Documentation
+- **ADR spawned?:** ADR-NNN — "Chunks become a first-class persisted entity"
+
+---
+
+## 1. Problem
+
+Once chunks become editable in 0.6.0 (E5), production teams will need to answer "who changed what, when, and why is the answer suddenly different?". Without an audit trail, a regression caused by a chunk edit is impossible to investigate.
+
+Today the architecture makes this hard because **chunks are not persisted as first-class records**. They live as a JSON blob inside `analysis_jobs.chunks_json` and as derived rows in OpenSearch. There is no chunk identity that survives a re-parse, no row to attach an audit record to, and no way to retrieve "the version of these chunks at the last push".
+
+This issue elevates chunks to a first-class persisted entity (with stable IDs and content versioning), introduces an immutable `chunk_edits` table, and exposes a snapshot API consumed by the visual diff (#221).
+
+## 2. Goals
+
+- [ ] Promote chunks to a first-class persisted entity with stable IDs across edits.
+- [ ] Every chunk operation (create / update / delete / merge / split) writes an immutable `chunk_edits` record with: actor, timestamp, action, before-state, after-state, optional reason.
+- [ ] API: `GET /api/documents/{id}/chunks/history` returns the edit timeline.
+- [ ] API: `GET /api/documents/{id}/chunks?at=<push_id>` returns the chunkset snapshot at a given push.
+- [ ] Backwards compatible: existing reads of `analysis_jobs.chunks_json` keep working until #206 finishes the migration.
+
+## 3. Non-goals
+
+- Undo / redo UI — out of scope (the audit trail is the substrate; UI comes later).
+- Rollback to an arbitrary past state — not in 0.6.0; use the snapshot API for read-only inspection.
+- A diff *view* — that is **#221**.
+- Per-chunk content hash — that is part of **#223**, not this issue. (#204's `chunkset_hash` is at the link granularity.)
+- Authentication / authorization model rework — `actor` defaults to a hard-coded `"system"` until the auth layer is ready.
+
+## 4. Context & constraints
+
+### Existing code surface
+
+- `document-parser/domain/value_objects.py` — `ChunkResult` (transient).
+- `document-parser/domain/models.py` — `AnalysisJob.chunks_json` (current chunkset storage).
+- `document-parser/services/analysis_service.py` — chunking pipeline.
+- `document-parser/persistence/database.py` — schema + migrations.
+- `document-parser/api/` — no chunks endpoint today; needs creation.
+- `frontend/src/features/chunking/` — Pinia store + API client.
+
+### Hexagonal Architecture constraints
+
+- New domain entities `Chunk` and `ChunkEdit` live in `domain/models.py`.
+- `ChunkRepository` and `ChunkEditRepository` are ports (`domain/ports.py`).
+- aiosqlite adapters in `persistence/chunk_repo.py` and `persistence/chunk_edit_repo.py`.
+- A new `ChunkEditingService` in `services/` orchestrates the operations and writes audit records atomically with the chunk write.
+- The existing `analysis_jobs.chunks_json` becomes a **legacy fallback** — read by `ChunkRepository.list_for_doc()` if no rows exist in the new `chunks` table. #206 backfills.
+
+### Hard constraints
+
+- Stable `chunk.id` across edits. A chunk that was split into two creates two new ids; merging two chunks produces a third new id. The "lineage" is recorded in `chunk_edits`. (No "ship the same id" hack.)
+- Immutable audit table. Once written, never updated.
+- No PII leak in audit records — `actor` is whatever the auth layer hands us; `before`/`after` payloads are the chunk text and metadata only.
+- Atomicity: an edit + its audit row are written in the same SQL transaction.
+
+## 5. Proposed design
+
+### 5.1 Domain
+
+`document-parser/domain/models.py`:
+
+```python
+@dataclass
+class Chunk:
+    id: str                       # uuid4 hex
+    document_id: str
+    sequence: int                 # ordering within the doc; gaps allowed
+    text: str
+    headings: list[str]
+    source_page: int | None
+    bboxes: list[Bbox]            # carried for rendering; not part of identity
+    doc_items: list[str]
+    token_count: int | None
+    created_at: datetime
+    updated_at: datetime
+    deleted_at: datetime | None   # soft delete
+
+class ChunkEditAction(StrEnum):
+    INSERT = "insert"
+    UPDATE = "update"
+    DELETE = "delete"
+    MERGE  = "merge"
+    SPLIT  = "split"
+
+@dataclass(frozen=True)
+class ChunkEdit:
+    id: str
+    document_id: str
+    chunk_id: str | None          # null on MERGE result row (uses children_ids)
+    action: ChunkEditAction
+    actor: str                    # "system" until auth lands
+    at: datetime
+    before: dict | None           # JSON snapshot — None for INSERT
+    after: dict | None            # JSON snapshot — None for DELETE
+    parents: list[str]            # for SPLIT result rows: source chunk id; for MERGE: source ids
+    children: list[str]           # inverse links
+    reason: str | None
+```
+
+Domain operations on a chunkset (`domain/chunk_editing.py`):
+
+```python
+def insert(chunks: list[Chunk], at_position: int, new_chunk: Chunk) -> list[Chunk]: ...
+def update(chunks: list[Chunk], chunk_id: str, *, text: str, headings: list[str]) -> list[Chunk]: ...
+def delete(chunks: list[Chunk], chunk_id: str) -> list[Chunk]: ...
+def merge(chunks: list[Chunk], chunk_ids: list[str]) -> tuple[list[Chunk], Chunk]:
+    """Returns the updated list and the new merged chunk."""
+def split(chunks: list[Chunk], chunk_id: str, at_offset: int) -> tuple[list[Chunk], Chunk, Chunk]:
+    """Returns the updated list and the two new chunks."""
+```
+
+These are pure. The service wraps each call with audit-record generation.
+
+### 5.2 Persistence
+
+```sql
+CREATE TABLE IF NOT EXISTS chunks (
+    id            TEXT PRIMARY KEY,
+    document_id   TEXT NOT NULL REFERENCES documents(id) ON DELETE CASCADE,
+    sequence      INTEGER NOT NULL,
+    text          TEXT NOT NULL,
+    headings      TEXT NOT NULL DEFAULT '[]',  -- JSON
+    source_page   INTEGER,
+    bboxes        TEXT NOT NULL DEFAULT '[]',  -- JSON
+    doc_items     TEXT NOT NULL DEFAULT '[]',  -- JSON
+    token_count   INTEGER,
+    created_at    TEXT NOT NULL,
+    updated_at    TEXT NOT NULL,
+    deleted_at    TEXT
+);
+CREATE INDEX IF NOT EXISTS idx_chunks_doc       ON chunks(document_id);
+CREATE INDEX IF NOT EXISTS idx_chunks_doc_seq   ON chunks(document_id, sequence);
+
+CREATE TABLE IF NOT EXISTS chunk_edits (
+    id            TEXT PRIMARY KEY,
+    document_id   TEXT NOT NULL REFERENCES documents(id) ON DELETE CASCADE,
+    chunk_id      TEXT,
+    action        TEXT NOT NULL,
+    actor         TEXT NOT NULL DEFAULT 'system',
+    at            TEXT NOT NULL,
+    before_json   TEXT,
+    after_json    TEXT,
+    parents_json  TEXT NOT NULL DEFAULT '[]',
+    children_json TEXT NOT NULL DEFAULT '[]',
+    reason        TEXT
+);
+CREATE INDEX IF NOT EXISTS idx_chunk_edits_doc_at ON chunk_edits(document_id, at);
+CREATE INDEX IF NOT EXISTS idx_chunk_edits_chunk  ON chunk_edits(chunk_id);
+
+-- Snapshot table — captures the chunkset hash at every successful push.
+CREATE TABLE IF NOT EXISTS chunk_pushes (
+    id            TEXT PRIMARY KEY,
+    document_id   TEXT NOT NULL REFERENCES documents(id) ON DELETE CASCADE,
+    store_id      TEXT NOT NULL REFERENCES stores(id)    ON DELETE CASCADE,
+    chunkset_hash TEXT NOT NULL,
+    chunk_ids     TEXT NOT NULL,           -- JSON array of chunk ids in order at push time
+    pushed_at     TEXT NOT NULL
+);
+CREATE INDEX IF NOT EXISTS idx_chunk_pushes_doc_store ON chunk_pushes(document_id, store_id);
+```
+
+Note: `chunk_pushes.chunk_ids` materialises the chunkset at push time. Combined with the immutable `chunk_edits` history, we can reconstruct any past chunkset by replay (slower) — but `chunk_ids` is the cheap path.
+
+### 5.3 Infra adapters
+
+None.
+
+### 5.4 Services
+
+`document-parser/services/chunk_editing_service.py`:
+
+```python
+class ChunkEditingService:
+    def __init__(self, chunks: ChunkRepository, edits: ChunkEditRepository, ...): ...
+
+    async def insert(self, doc_id, at_position, payload, *, actor, reason=None) -> Chunk: ...
+    async def update(self, doc_id, chunk_id, payload, *, actor, reason=None) -> Chunk: ...
+    async def delete(self, doc_id, chunk_id, *, actor, reason=None) -> None: ...
+    async def merge(self, doc_id, chunk_ids, *, actor, reason=None) -> Chunk: ...
+    async def split(self, doc_id, chunk_id, at_offset, *, actor, reason=None) -> tuple[Chunk, Chunk]: ...
+
+    async def history(self, doc_id) -> list[ChunkEdit]: ...
+    async def chunkset_at(self, doc_id, push_id) -> list[Chunk]: ...
+```
+
+Every mutating method runs in a single SQL transaction:
+1. Apply the domain operation.
+2. Persist chunk rows (insert / update / soft-delete).
+3. Insert `chunk_edits` row with full before/after snapshot.
+4. Trigger #204's stale detection on the doc.
+
+`history()` — paginated (default 50, max 500), ordered `at DESC`.
+
+`chunkset_at(push_id)` — read `chunk_pushes.chunk_ids`, return the matching `chunks` rows in that order.
+
+`IngestionService.ingest()` (touched in #203) writes a row to `chunk_pushes` on success.
+
+### 5.5 API
+
+New router `document-parser/api/chunks.py`:
+
+```
+GET    /api/documents/{id}/chunks                         List current chunks
+GET    /api/documents/{id}/chunks?at=<push_id>            Snapshot at push
+GET    /api/documents/{id}/chunks/history                 Edit timeline (paginated)
+POST   /api/documents/{id}/chunks                         Insert chunk
+PATCH  /api/documents/{id}/chunks/{chunk_id}              Update chunk
+DELETE /api/documents/{id}/chunks/{chunk_id}              Soft-delete chunk
+POST   /api/documents/{id}/chunks/merge                   { chunkIds: [...], reason? } → new chunk
+POST   /api/documents/{id}/chunks/{chunk_id}/split        { atOffset, reason? }        → two new chunks
+```
+
+DTOs (`schemas.py`, camelCase via alias):
+
+```python
+class ChunkResponse(BaseModel):
+    id: str
+    sequence: int
+    text: str
+    headings: list[str]
+    sourcePage: int | None
+    tokenCount: int | None
+    bboxes: list[BboxDto]
+    docItems: list[str]
+    updatedAt: datetime
+
+class ChunkEditResponse(BaseModel):
+    id: str
+    chunkId: str | None
+    action: str
+    actor: str
+    at: datetime
+    before: dict | None
+    after: dict | None
+    parents: list[str]
+    children: list[str]
+    reason: str | None
+```
+
+### 5.6 Frontend — feature module
+
+Touched: `frontend/src/features/chunking/`.
+
+- `api.ts` — clients for the seven endpoints above.
+- `store.ts` — Pinia store holds `chunks`, `history`, and a draft layer for optimistic updates with rollback on failure.
+- `ui/` — primitives only in this issue (`ChunkRow.vue`, `ChunkActionsMenu.vue`); the full editor is built in #219 / #220 / #221 on top.
+- `data-e2e` selectors named upfront: `chunk-row`, `chunk-actions-menu`, `chunk-action-merge`, etc.
+
+### 5.7 Cross-cutting
+
+- Feature flag: existing `chunking` flag (in `/api/health`) gates the editing endpoints. When `false`, the endpoints return `403`.
+- i18n: `chunks.action.*`, `chunks.reason.placeholder` keys.
+- Shared types: `DocumentChunk`, `ChunkEdit` re-exported from `shared/types.ts`.
+
+## 6. Alternatives considered
+
+### Alternative A — Keep chunks in `analysis_jobs.chunks_json`, version the JSON
+
+- **Summary:** Add a `version` column on `analysis_jobs` and a `chunk_edits` table referencing JSON paths inside `chunks_json`.
+- **Why not:** No chunk identity → `before`/`after` lookups become regex on JSON. Splits and merges have nowhere to record lineage. Reviewers and customer support cannot navigate the audit. The architectural cost is paid sooner or later — pay it now while the data is small.
+
+### Alternative B — Use OpenSearch as the source of truth for chunks
+
+- **Summary:** Treat the OpenSearch document as the authoritative chunk; record audit metadata there.
+- **Why not:** OpenSearch is a derived index. It is the *projection* of the corpus, not its source. Replacing OpenSearch (Pinecone, Qdrant) would lose history. Source of truth belongs in SQLite.
+
+### Alternative C — Event-sourcing only (no current-state table)
+
+- **Summary:** Drop `chunks` table; replay `chunk_edits` to compute current state.
+- **Why not:** Replay cost on every read is unacceptable for chunks-editor latency and for #221's diff. Hybrid (current state + immutable history) is the standard pragmatic shape.
+
+## 7. API & data contract
+
+### Endpoints
+
+See §5.5 — eight new endpoints, all behind the existing `chunking` feature flag.
+
+### Persistence schema
+
+See §5.2.
+
+### Env vars / config
+
+| Name | Default | Allowed | Notes |
+|------|---------|---------|-------|
+| `CHUNK_HISTORY_PAGE_DEFAULT` | `50` | int 1–500 | default page size for history |
+| `CHUNK_HISTORY_PAGE_MAX` | `500` | int | hard cap |
+
+### Breaking changes
+
+None. Existing chunks in `chunks_json` remain accessible via the legacy fallback in `ChunkRepository.list_for_doc()` until #206 finishes the migration.
+
+## 8. Risks & mitigations
+
+| Risk | Audit dimension | Likelihood | Impact | How we notice | Mitigation / rollback |
+|------|-----------------|------------|--------|---------------|------------------------|
+| Audit table growth on heavy editing customers | Performance | Medium | Medium | Slow `chunk_edits` queries | Indexed by (doc, at). Pagination on the API. Future: archival job. |
+| Race between two parallel edits on the same chunk | DDD | Low | Medium | Lost update | All mutations go through `ChunkEditingService` which serialises via the SQL transaction; client sends `If-Match` with `updatedAt` for optimistic concurrency on `PATCH` / `DELETE` |
+| Audit before/after reveals sensitive content if shared | Security | Medium | Medium | Audit export shared accidentally | The audit endpoint is gated by the same auth as chunk edits; export does not include audit by default; admin-only flag in a future release |
+| Schema drift: `chunks_json` and `chunks` table diverge during migration window | DDD | Medium | High | Diff between the two on the same doc | #206 is the single source of truth; new edits write to `chunks` only; reads prefer `chunks` and fall back to `chunks_json` |
+
+## 9. Testing strategy
+
+### Backend — pytest
+
+- **Unit (domain):**
+  - `test_chunk_editing_pure.py` — insert / update / delete / merge / split on in-memory lists; properties verified (lengths, sequences, identity rules).
+- **Persistence:**
+  - `test_chunk_repo.py` — round-trip, soft delete, ordering by sequence.
+  - `test_chunk_edit_repo.py` — write + read history; immutability (UPDATE on `chunk_edits` is rejected by a CHECK constraint or service-level guard).
+- **Services / integration:**
+  - `test_chunk_editing_service_audit_atomicity.py` — failure mid-write rolls back both chunk and audit.
+  - `test_chunkset_at_snapshot.py` — `chunkset_at(push_id)` returns the right snapshot after edits.
+  - `test_legacy_fallback.py` — read chunks for a doc that has only `chunks_json` (pre-migration).
+
+### Frontend — Vitest
+
+- `features/chunking/api.test.ts` — eight endpoints round-trip.
+- `features/chunking/store.test.ts` — optimistic update + rollback on API failure; history pagination.
+
+### E2E — Karate UI
+
+Out of scope here; the editor lands in #219 / #220 with E2E tags `@critical @ui`.
+
+### Manual QA
+
+1. Trigger an INSERT / UPDATE / DELETE / MERGE / SPLIT.
+2. `GET /api/documents/{id}/chunks/history` shows the action with `before`/`after`.
+3. After a successful push, `GET /api/documents/{id}/chunks?at=<push_id>` returns the chunkset captured at push.
+
+## 10. Rollout & observability
+
+### Release branch
+
+`release/0.6.0`.
+
+### Feature flag
+
+The existing `chunking` flag (in `/api/health`) controls whether the editing endpoints accept writes. Reads (`GET`) are always allowed (consistent with the chunks tab being read-only when the flag is off).
+
+### Observability
+
+- Each mutation logs: `INFO event=chunk_edit doc_id=<id> chunk_id=<id> action=<action> actor=<actor>`.
+- Counter (Prometheus, future): `chunk_edits_total{action}`.
+
+### Rollback plan
+
+The migration is additive. Reverting the code leaves the new tables but no writers. Reads from the chunks tab fall back to the legacy `chunks_json`. Editing endpoints disappear (404). If a clean rollback is needed, drop the three new tables.
+
+## 11. Open questions
+
+- Should `actor` carry a structured object (id, name, role) or stay as a free-form string? **Decision for 0.6.0:** free-form string (`"system"` today; whatever auth provides later). Structured upgrade is non-breaking thanks to JSON-friendly columns.
+- Should we generate a *human-readable* diff in the audit row (line-level), or only store before/after JSON? **Decision:** store JSON; render the diff client-side in #221.
+
+## 12. References
+
+- **Issue:** https://github.com/scub-france/Docling-Studio/issues/205
+- **Related issues:** #202 (lifecycle), #203 (per-store), #204 (auto-stale), #206 (migration), #219 (editor view), #220 (edit actions), #221 (visual diff), #222 (push)
+- **ADRs:** ADR — "Chunks become a first-class persisted entity"
+- **Project docs:**
+  - Architecture: `docs/architecture.md`
+  - Coding standards: `docs/architecture/coding-standards.md`
+  - ADR guide: `docs/architecture/adr-guide.md`

docs/design/206-lifecycle-state-migration.md

@@ -0,0 +1,265 @@
+# Design: Migrate existing documents to the new lifecycle state model
+
+- **Issue:** #206
+- **Title on issue:** [CHORE] Migrate existing documents to the new lifecycle state model
+- **Author:** Pier-Jean Malandrino
+- **Date:** 2026-04-29
+- **Status:** Accepted
+- **Target milestone:** 0.6.0 — Doc-centric ingest
+- **Impacted layers:** backend: persistence · services · infra (CLI) · frontend (none)
+- **Audit dimensions likely touched:** CI/Build · Tests · Documentation · Security
+- **ADR spawned?:** no
+
+---
+
+## 1. Problem
+
+#202, #203, and #205 introduce four new tables / columns: `documents.lifecycle_state`, `stores`, `document_store_links`, `chunks`, `chunk_edits`, `chunk_pushes`. Existing tenants already have documents, analysis jobs, and chunks living in `analysis_jobs.chunks_json` plus rows in OpenSearch. After deploy, these documents must appear in `/docs` with sensible state — otherwise the page looks broken (every doc shows `Uploaded` or unknown).
+
+This issue ships an idempotent migration that backfills:
+- `documents.lifecycle_state` and `lifecycle_state_at`.
+- One `stores` row (the `default` seeded by #203, no-op if already present).
+- One `document_store_links` row per document already represented in OpenSearch under the legacy index.
+- `chunks` rows materialized from existing `analysis_jobs.chunks_json`.
+- `chunk_pushes` rows reconstructed for documents currently indexed.
+
+It also reindexes from `docling-studio-chunks` to `docling-studio-default` if needed, so the new store-aware code can read them.
+
+## 2. Goals
+
+- [ ] Idempotent CLI command `python -m document_parser.tools.migrate_06` (re-runs safely; second run is a no-op).
+- [ ] `--dry-run` flag prints what would change without writing.
+- [ ] Inference rules below produce a sensible state for every existing document.
+- [ ] Per-tenant counts logged at the end (parsed=N, chunked=N, ingested=N, failed=N).
+- [ ] Documented in `docs/runbooks/release-0.6.0-migration.md`.
+- [ ] Tested on a snapshot DB representing the three relevant pre-states (no analysis, completed analysis, indexed in OpenSearch).
+
+## 3. Non-goals
+
+- Re-running ingestion. The migration only touches metadata; it does not re-embed.
+- A web UI for migration progress — operator-only, run via CLI.
+- Migrating tenants on environments that have already adopted parts of the new schema (e.g. a partial pre-release deploy) — out of scope; an emergency hotfix path is documented separately.
+- Moving to a new vector backend — out of scope.
+
+## 4. Context & constraints
+
+### Existing code surface
+
+- `document-parser/persistence/database.py` — `_run_migrations()` runs schema DDL on app start.
+- `document-parser/persistence/document_repo.py`, `analysis_repo.py` — read paths.
+- `document-parser/infra/opensearch_store.py` — read access to existing OpenSearch index.
+- New repos from #203 / #205: `store_repo.py`, `document_store_link_repo.py`, `chunk_repo.py`, `chunk_edit_repo.py`.
+
+### Hexagonal Architecture constraints
+
+- The migration is a **CLI script** in `document-parser/tools/migrate_06.py`. It uses repositories only — never raw SQL outside of repo modules. This keeps the upgrade path testable like any service.
+- The reindex helper (`docling-studio-chunks → docling-studio-default`) lives in `infra/opensearch_store.py` as a method, called by the script.
+
+### Hard constraints
+
+- Idempotent: re-running on an already-migrated DB makes zero writes.
+- Resumable: a crash mid-run can be restarted; checkpoints stored in a tiny `migration_progress` table (rows: `(name, completed_at)`).
+- No assumption about uptime: the script must work on a quiesced DB OR a live one (transactions short, single-row scope).
+- Read-only on OpenSearch by default; write happens only when the operator explicitly passes `--reindex-default-store`.
+
+### Deployment modes
+
+Run once per environment (`local`, `staging`, `prod`). HF Space deployments — same script, run by the deploy step before the new image starts serving traffic.
+
+## 5. Proposed design
+
+### 5.1 Domain
+
+No new domain code. The migration is a coordinator over existing repos.
+
+### 5.2 Persistence
+
+The schema additions ship in #202 / #203 / #205 migrations (already applied at app start). This issue contributes:
+
+```sql
+CREATE TABLE IF NOT EXISTS migration_progress (
+    name        TEXT PRIMARY KEY,
+    completed_at TEXT NOT NULL
+);
+```
+
+This is the only new table. It records each migration step's completion to enable resumability.
+
+### 5.3 Infra adapters
+
+`OpenSearchStore.copy_legacy_to_default(*, dry_run: bool) -> int` —
+1. If `docling-studio-chunks` exists and `docling-studio-default` does not, create the new index with the same mapping.
+2. Reindex via `_reindex_op` (OpenSearch reindex API) from legacy → default.
+3. Add a read-only alias `docling-studio-chunks → docling-studio-default`.
+4. Returns the number of documents copied.
+
+### 5.4 Services
+
+`document-parser/services/migration_06_service.py` — orchestrator with one method per step. Each step is bracketed by:
+
+```python
+if not progress.is_done(step_name):
+    do_step(...)
+    progress.mark_done(step_name)
+```
+
+Steps:
+
+1. **`seed_default_store`** — `INSERT OR IGNORE INTO stores (...) VALUES ('default', ...)`. (Already in #203's migration; this step is a guard for older deploys that skipped the seed.)
+2. **`backfill_document_lifecycle_state`** — for each document, infer state:
+   - Has at least one `analysis_jobs` row with `status=COMPLETED` and a non-null `chunks_json` → `Chunked` (refined below).
+   - Has at least one row indexed in OpenSearch (legacy or default index) → `Ingested`.
+   - Has only `analysis_jobs` rows with `status=COMPLETED` and no `chunks_json` → `Parsed`.
+   - Has only `analysis_jobs` rows with `status=FAILED` → `Failed`.
+   - Else → `Uploaded`.
+3. **`materialize_chunks_from_chunks_json`** — for each `analysis_jobs` row with non-null `chunks_json`, parse and insert rows into `chunks` table. Stable id derivation: `f"chunk-{document_id}-{sequence:05d}-{sha256(text)[:8]}"` so re-runs are deterministic.
+4. **`backfill_links_from_opensearch`** — for each document, query OpenSearch (default index, then legacy as fallback) for the count of indexed chunks. If non-zero:
+   - Insert `document_store_links` row (state = `Ingested`).
+   - Compute the chunkset hash via #204's function over the materialized `chunks`.
+   - Set `link.chunkset_hash`.
+   - Insert a `chunk_pushes` row with the materialized chunk ids (best-effort: ordered by sequence).
+5. **`reaggregate_document_lifecycle`** — recompute the doc state by combining the link states (#203's aggregation rule) and update `documents.lifecycle_state` accordingly. This may upgrade or downgrade the value set in step 2 (e.g. `Chunked → Ingested`).
+6. **`copy_legacy_index`** *(optional, behind `--reindex-default-store`)* — call `OpenSearchStore.copy_legacy_to_default()`.
+
+Each step is wrapped in its own transaction; partial failure leaves earlier steps committed.
+
+### 5.5 API
+
+None. CLI only.
+
+### 5.6 Frontend
+
+None.
+
+### 5.7 Cross-cutting
+
+- Logging: structured at `INFO` per step, at `ERROR` per failed item with `doc_id`. End summary printed to stdout in a fixed table.
+- Configuration via CLI flags only (no env vars introduced for this script):
+
+```
+python -m document_parser.tools.migrate_06 \
+   [--dry-run] \
+   [--reindex-default-store] \
+   [--limit N] \
+   [--only-step <step_name>]
+```
+
+- Documentation: `docs/runbooks/release-0.6.0-migration.md` describes the operator flow (backup → run dry-run → run real → validate via `/api/documents`).
+
+## 6. Alternatives considered
+
+### Alternative A — Schema migration applies everything at app boot
+
+- **Summary:** Embed inference logic in `_run_migrations()` so the app starts and self-heals.
+- **Why not:** Migration is observable and debuggable as a CLI; baking it into boot time risks slow startup and silent failures. Operators want to run it during a maintenance window with a dry-run first.
+
+### Alternative B — Migrate on demand (lazy)
+
+- **Summary:** Add a "needs migration" check at runtime, materialize chunks for a doc only on first read.
+- **Why not:** Surfaces the partial state in the API (`stores: []` for unmigrated docs even if they are indexed). The library page (#211) becomes a half-true representation of reality. Eager migration is simpler.
+
+### Alternative C — Run only the schema; let users re-ingest manually
+
+- **Summary:** Skip backfill; users re-trigger ingestion from the UI as needed.
+- **Why not:** A tenant with 10k docs cannot click 10k re-ingest buttons. The killer flow promises "your existing corpus already has state".
+
+## 7. API & data contract
+
+No API changes.
+
+### Persistence schema
+
+See §5.2 (one new table: `migration_progress`).
+
+### CLI
+
+```
+python -m document_parser.tools.migrate_06 [flags]
+```
+
+All flags are documented in `--help`.
+
+### Breaking changes
+
+None.
+
+## 8. Risks & mitigations
+
+| Risk | Audit dimension | Likelihood | Impact | How we notice | Mitigation / rollback |
+|------|-----------------|------------|--------|---------------|------------------------|
+| Migration crashes mid-run | CI/Build | Medium | Medium | Error logs | Resumable via `migration_progress`; re-run picks up where it left off |
+| Wrong inference for a doc edge case (e.g. multiple stores already) | DDD | Low | Medium | Operator validation (sample 10 docs by hand) | Dry-run lists changes; operator can `--only-step` to redo a single step |
+| OpenSearch reindex copies bad data | Decoupling | Low | High | Diff in document counts | Reindex is opt-in (`--reindex-default-store`); operator runs it deliberately; alias keeps legacy reads working |
+| Hash mismatch after migration (chunks materialized differ from what was indexed) | DDD | Medium | Medium | Newly-migrated link shows `Stale` immediately | Acceptable behaviour: it correctly tells the user "your indexed chunks may not match the current source"; operator can choose to re-ingest or leave as-is |
+| Missing analysis-job rows for a doc | Tests | Low | Low | Doc shows `Uploaded` despite being indexed | Inference falls back to OpenSearch presence; if both empty, `Uploaded` is correct |
+
+## 9. Testing strategy
+
+### Backend — pytest
+
+- **Unit (services):** `test_migration_inference.py` — table-driven: every `(analysis_state, has_chunks_json, indexed)` tuple → expected `lifecycle_state`.
+- **Integration:** `test_migration_idempotency.py` — run twice → second run zero writes; mid-run abort + restart → final state matches one-shot run.
+- **Persistence:** `test_chunks_materialization.py` — `chunks_json` → rows; ids deterministic (re-running produces same ids).
+
+### Snapshot fixture
+
+`document-parser/tests/fixtures/db_pre_06.sqlite` — handcrafted SQLite DB with three documents (uploaded only, completed analysis, indexed in OpenSearch via fake adapter). Migration runs against it and the resulting state is asserted.
+
+### Manual QA
+
+1. Snapshot prod DB.
+2. Run `--dry-run` on the snapshot → review the printed plan.
+3. Run for real on the snapshot → validate via `/api/documents` that every doc has a sensible `lifecycleState` and (where applicable) `stores`.
+4. Run the same against prod during the maintenance window.
+
+### Performance
+
+The script is O(N_docs + N_chunks). For 10k docs / 500k chunks: target < 5 minutes on a single-node SQLite. No parallelism needed in 0.6.0.
+
+## 10. Rollout & observability
+
+### Release branch
+
+`release/0.6.0`. The migration ships in the same release as #202 / #203 / #204 / #205 — operators run it after deploying the new code and before sending traffic.
+
+### Feature flag
+
+None.
+
+### Observability
+
+- Stdout summary table at the end:
+
+  ```
+  step                                   wrote   skipped
+  seed_default_store                         0         1
+  backfill_document_lifecycle_state         87         0
+  materialize_chunks_from_chunks_json    14502         0
+  backfill_links_from_opensearch            73        14
+  reaggregate_document_lifecycle            73         0
+  copy_legacy_index                          —         —
+  total                                  14735        15
+  ```
+
+- Logs: per-step start / finish; per-error row.
+
+### Rollback plan
+
+- `migration_progress` rows can be deleted to force re-run a specific step.
+- The new tables can be truncated or dropped (data is recoverable from `analysis_jobs.chunks_json` and OpenSearch).
+- Reverting application code: the new tables stay populated but unused; safe.
+
+## 11. Open questions
+
+- Should the script open a *long* SQLite transaction or many small ones? **Decision:** many small (per-doc), to keep the DB writeable for the live app if the operator chooses to run the script while traffic is on.
+- Hash mismatch on freshly-migrated docs (chunks materialized may differ from what was indexed) — should we *force-mark* them `Stale`, or trust the hash compare to do it implicitly? **Decision:** trust the compare. The result is identical and the path is uniform.
+
+## 12. References
+
+- **Issue:** https://github.com/scub-france/Docling-Studio/issues/206
+- **Related issues:** #202 (lifecycle), #203 (per-store), #204 (hash), #205 (audit + chunks table)
+- **ADRs:** none planned
+- **Project docs:**
+  - Architecture: `docs/architecture.md`
+  - Coding standards: `docs/architecture/coding-standards.md`
+  - Operations playbooks: `docs/operations/`

document-parser/api/documents.py

@@ -34,6 +34,8 @@ def _to_response(doc) -> DocumentResponse:
         file_size=doc.file_size,
         page_count=doc.page_count,
         created_at=str(doc.created_at),
+        lifecycle_state=doc.lifecycle_state.value,
+        lifecycle_state_at=(str(doc.lifecycle_state_at) if doc.lifecycle_state_at else None),
     )
 
 

document-parser/api/schemas.py

@@ -56,6 +56,11 @@ class DocumentResponse(_CamelModel):
     file_size: int | None = None
     page_count: int | None = None
     created_at: str | datetime
+    # 0.6.0 — Document lifecycle state machine (#202). The lifecycle
+    # describes the document as a whole; `status` above is kept for
+    # backwards compat and currently still maps to `DOCUMENT_STATUS_UPLOADED`.
+    lifecycle_state: str = "Uploaded"
+    lifecycle_state_at: str | datetime | None = None
 
 
 class AnalysisResponse(_CamelModel):

document-parser/domain/events.py

@@ -0,0 +1,35 @@
+"""Domain events — frozen records that document state transitions.
+
+Events are produced by domain operations (typically returned from a
+mutation method on an aggregate). They are pure data — no event bus is
+wired in 0.6.0; services can choose to log, persist, or publish them
+later. Keeping them here keeps the domain layer free of any event-bus
+infrastructure.
+"""
+
+from __future__ import annotations
+
+from dataclasses import dataclass
+from typing import TYPE_CHECKING
+
+if TYPE_CHECKING:
+    from datetime import datetime
+
+    from domain.value_objects import DocumentLifecycleState
+
+
+@dataclass(frozen=True)
+class DocumentLifecycleChanged:
+    """A Document lifecycle transition occurred.
+
+    Attributes:
+        document_id: id of the document that transitioned.
+        previous: state the document was in before the transition.
+        current: state the document is in after the transition.
+        at: timestamp of the transition (UTC).
+    """
+
+    document_id: str
+    previous: DocumentLifecycleState
+    current: DocumentLifecycleState
+    at: datetime

document-parser/domain/exceptions.py

@@ -0,0 +1,37 @@
+"""Domain-level exceptions.
+
+Exceptions defined in this module are raised by domain operations and value
+objects when an invariant is violated. They have no infrastructure
+dependencies and are safe to import from any layer.
+"""
+
+from __future__ import annotations
+
+from typing import TYPE_CHECKING
+
+if TYPE_CHECKING:
+    from domain.value_objects import DocumentLifecycleState
+
+
+class DomainError(Exception):
+    """Base class for domain-level errors. Catch this when wiring API
+    layers if you want a single hook for any invariant violation."""
+
+
+class InvalidLifecycleTransitionError(DomainError):
+    """Raised when a Document.transition_to() call asks for a (source,
+    target) pair that is not in the allowed transition table.
+
+    Carries `source` and `target` so callers can produce a useful error
+    message without re-discovering them.
+    """
+
+    def __init__(
+        self,
+        *,
+        source: DocumentLifecycleState,
+        target: DocumentLifecycleState,
+    ) -> None:
+        super().__init__(f"Invalid document lifecycle transition: {source.value} -> {target.value}")
+        self.source = source
+        self.target = target

document-parser/domain/lifecycle.py

@@ -0,0 +1,83 @@
+"""Document lifecycle state machine — pure domain logic.
+
+Defines the canonical state model for a Document in Docling Studio:
+  Uploaded → Parsed → Chunked → Ingested → (Stale|Chunked) → Ingested
+
+Stale is set by the auto-detect logic (#204) — never reached by a manual
+action. Failed is reachable from any state and represents a pipeline error.
+
+This module contains:
+  - The transition table (which (from → to) pairs are allowed).
+  - `is_allowed_transition`: the pure check.
+  - `assert_transition`: raises `InvalidLifecycleTransitionError` when not allowed.
+
+The dataclass that carries the state lives in `domain.models.Document`. The
+domain event emitted on transition lives in `domain.events`.
+"""
+
+from __future__ import annotations
+
+from domain.exceptions import InvalidLifecycleTransitionError
+from domain.value_objects import DocumentLifecycleState
+
+# Allowed transitions: from → set of allowed targets.
+# Failed is always reachable as a terminal-ish state (see notes below).
+# Self-loops are allowed only where they make pipeline sense (e.g. re-chunk).
+_TRANSITIONS: dict[DocumentLifecycleState, frozenset[DocumentLifecycleState]] = {
+    DocumentLifecycleState.UPLOADED: frozenset(
+        {
+            DocumentLifecycleState.PARSED,
+            DocumentLifecycleState.CHUNKED,  # parse + chunk in one pipeline call
+            DocumentLifecycleState.FAILED,
+        }
+    ),
+    DocumentLifecycleState.PARSED: frozenset(
+        {
+            DocumentLifecycleState.PARSED,  # idempotent re-parse
+            DocumentLifecycleState.CHUNKED,
+            DocumentLifecycleState.FAILED,
+        }
+    ),
+    DocumentLifecycleState.CHUNKED: frozenset(
+        {
+            DocumentLifecycleState.CHUNKED,  # re-chunk
+            DocumentLifecycleState.INGESTED,
+            DocumentLifecycleState.FAILED,
+        }
+    ),
+    DocumentLifecycleState.INGESTED: frozenset(
+        {
+            DocumentLifecycleState.STALE,
+            DocumentLifecycleState.CHUNKED,  # re-chunk after ingest
+            DocumentLifecycleState.INGESTED,  # re-push (idempotent)
+            DocumentLifecycleState.FAILED,
+        }
+    ),
+    DocumentLifecycleState.STALE: frozenset(
+        {
+            DocumentLifecycleState.INGESTED,
+            DocumentLifecycleState.CHUNKED,
+            DocumentLifecycleState.FAILED,
+        }
+    ),
+    # Failed is a recoverable state — the operator (or a retry) can move
+    # back to a non-terminal state by re-running the relevant pipeline step.
+    DocumentLifecycleState.FAILED: frozenset(
+        {
+            DocumentLifecycleState.UPLOADED,
+            DocumentLifecycleState.PARSED,
+            DocumentLifecycleState.CHUNKED,
+        }
+    ),
+}
+
+
+def is_allowed_transition(source: DocumentLifecycleState, target: DocumentLifecycleState) -> bool:
+    """Return True iff transitioning from `source` to `target` is allowed."""
+    return target in _TRANSITIONS.get(source, frozenset())
+
+
+def assert_transition(source: DocumentLifecycleState, target: DocumentLifecycleState) -> None:
+    """Raise `InvalidLifecycleTransitionError` if the transition is not allowed."""
+    if not is_allowed_transition(source, target):
+        raise InvalidLifecycleTransitionError(source=source, target=target)

document-parser/domain/lifecycle_aggregation.py

@@ -0,0 +1,58 @@
+"""Aggregate the per-(document, store) link states into a single
+document-level lifecycle state.
+
+The doc lifecycle column is the materialized result of this rule. It is
+recomputed any time a link write happens. Read paths use the stored
+column directly (cheap) — they do not call this rule on every GET.
+
+The rule prefers "more concerning" states first:
+
+    any link FAILED   -> Document FAILED
+    any link STALE    -> Document STALE
+    any link INGESTED -> Document INGESTED
+    no links          -> keep the document's current pre-link state
+                        (Uploaded / Parsed / Chunked) — the caller is
+                        responsible for not overwriting that.
+
+If you find yourself wanting a fourth case, you probably want a new
+link state, not a new aggregation branch.
+
+This module is pure: no I/O, no datetime — just data in / data out.
+"""
+
+from __future__ import annotations
+
+from typing import TYPE_CHECKING
+
+from domain.value_objects import DocumentLifecycleState, DocumentStoreLinkState
+
+if TYPE_CHECKING:
+    from collections.abc import Iterable
+
+    from domain.models import DocumentStoreLink
+
+
+def aggregate_lifecycle(
+    links: Iterable[DocumentStoreLink],
+    *,
+    fallback: DocumentLifecycleState,
+) -> DocumentLifecycleState:
+    """Compute the aggregate document lifecycle state.
+
+    Args:
+        links: every `DocumentStoreLink` for the document. May be empty.
+        fallback: the lifecycle state to return when there are no links —
+            typically the document's current pre-link state (`Uploaded`,
+            `Parsed`, or `Chunked`).
+
+    Returns:
+        The aggregate `DocumentLifecycleState`.
+    """
+    states = {link.state for link in links}
+    if DocumentStoreLinkState.FAILED in states:
+        return DocumentLifecycleState.FAILED
+    if DocumentStoreLinkState.STALE in states:
+        return DocumentLifecycleState.STALE
+    if DocumentStoreLinkState.INGESTED in states:
+        return DocumentLifecycleState.INGESTED
+    return fallback

document-parser/domain/models.py

@@ -7,6 +7,14 @@ import uuid
 from dataclasses import dataclass, field
 from datetime import UTC, datetime
 
+from domain.events import DocumentLifecycleChanged
+from domain.lifecycle import assert_transition
+from domain.value_objects import (
+    DocumentLifecycleState,
+    DocumentStoreLinkState,
+    StoreKind,
+)
+
 
 class AnalysisStatus(enum.StrEnum):
     PENDING = "PENDING"
@@ -32,6 +40,36 @@ class Document:
     page_count: int | None = None
     storage_path: str = ""
     created_at: datetime = field(default_factory=_utcnow)
+    lifecycle_state: DocumentLifecycleState = DocumentLifecycleState.UPLOADED
+    lifecycle_state_at: datetime | None = None
+
+    def transition_to(
+        self,
+        target: DocumentLifecycleState,
+        *,
+        now: datetime | None = None,
+    ) -> DocumentLifecycleChanged:
+        """Move the document to `target`, validating the transition.
+
+        Returns the corresponding `DocumentLifecycleChanged` event so the
+        caller (typically a service) can log / persist / publish it. The
+        event is pure data — no event bus is wired in 0.6.0.
+
+        Raises:
+            InvalidLifecycleTransitionError: if (current → target) is not in
+                the allowed transition table.
+        """
+        previous = self.lifecycle_state
+        assert_transition(previous, target)
+        at = now or _utcnow()
+        self.lifecycle_state = target
+        self.lifecycle_state_at = at
+        return DocumentLifecycleChanged(
+            document_id=self.id,
+            previous=previous,
+            current=target,
+            at=at,
+        )
 
 
 @dataclass
@@ -96,3 +134,70 @@ class AnalysisJob:
         self.status = AnalysisStatus.FAILED
         self.error_message = error
         self.completed_at = _utcnow()
+
+
+@dataclass
+class Store:
+    """A logical destination for ingested chunks.
+
+    A `Store` represents a named, configurable target for ingestion (e.g.
+    `rh-corpus-v3`, `legal-v1`). It is decoupled from the underlying
+    `VectorStore` adapter (which represents the *technology*, like
+    OpenSearch). One adapter can serve many stores by namespacing the
+    physical index name on `slug`.
+
+    See design doc `docs/design/203-per-store-ingestion-state.md`.
+    """
+
+    id: str = field(default_factory=_new_id)
+    name: str = ""
+    slug: str = ""
+    kind: StoreKind = StoreKind.OPENSEARCH
+    embedder: str = ""
+    config: dict = field(default_factory=dict)
+    is_default: bool = False
+    created_at: datetime = field(default_factory=_utcnow)
+
+
+@dataclass
+class DocumentStoreLink:
+    """A live record of a document's presence in a single store.
+
+    The link carries the per-pair state (Ingested / Stale / Failed) plus
+    metadata used by the auto-stale detection (#204) and the chunks
+    editor (#205). One row per (document, store) pair — enforced by a
+    UNIQUE constraint at the persistence layer.
+    """
+
+    id: str = field(default_factory=_new_id)
+    document_id: str = ""
+    store_id: str = ""
+    state: DocumentStoreLinkState = DocumentStoreLinkState.INGESTED
+    chunkset_hash: str | None = None
+    last_push_at: datetime | None = None
+    last_run_id: str | None = None
+    error_message: str | None = None
+
+    def mark_ingested(
+        self,
+        *,
+        hash_: str,
+        at: datetime,
+        run_id: str | None = None,
+    ) -> None:
+        """Record a successful push: chunkset hash + timestamp + run id."""
+        self.state = DocumentStoreLinkState.INGESTED
+        self.chunkset_hash = hash_
+        self.last_push_at = at
+        self.last_run_id = run_id
+        self.error_message = None
+
+    def mark_stale(self) -> None:
+        """Mark the link as stale (source chunkset drifted from pushed)."""
+        self.state = DocumentStoreLinkState.STALE
+        self.error_message = None
+
+    def mark_failed(self, *, error: str) -> None:
+        """Record a failed push attempt."""
+        self.state = DocumentStoreLinkState.FAILED
+        self.error_message = error

document-parser/domain/ports.py

@@ -9,12 +9,15 @@ from __future__ import annotations
 from typing import TYPE_CHECKING, Protocol, runtime_checkable
 
 if TYPE_CHECKING:
-    from domain.models import AnalysisJob, Document
+    from datetime import datetime
+
+    from domain.models import AnalysisJob, Document, DocumentStoreLink, Store
     from domain.value_objects import (
         ChunkingOptions,
         ChunkResult,
         ConversionOptions,
         ConversionResult,
+        DocumentLifecycleState,
         LLMProviderType,
         ReasoningResult,
     )
@@ -85,9 +88,46 @@ class DocumentRepository(Protocol):
 
     async def update_page_count(self, doc_id: str, page_count: int) -> None: ...
 
+    async def update_lifecycle(
+        self,
+        doc_id: str,
+        state: DocumentLifecycleState,
+        at: datetime,
+    ) -> None: ...
+
     async def delete(self, doc_id: str) -> bool: ...
 
 
+class StoreRepository(Protocol):
+    """Port for `Store` persistence (introduced by #203)."""
+
+    async def insert(self, store: Store) -> None: ...
+
+    async def find_all(self) -> list[Store]: ...
+
+    async def find_by_slug(self, slug: str) -> Store | None: ...
+
+    async def find_by_id(self, store_id: str) -> Store | None: ...
+
+    async def get_default(self) -> Store | None: ...
+
+
+class DocumentStoreLinkRepository(Protocol):
+    """Port for `DocumentStoreLink` persistence (introduced by #203)."""
+
+    async def upsert(self, link: DocumentStoreLink) -> None:
+        """Insert or update by (document_id, store_id)."""
+        ...
+
+    async def find_for_document(self, document_id: str) -> list[DocumentStoreLink]: ...
+
+    async def find_for_store(self, store_id: str) -> list[DocumentStoreLink]: ...
+
+    async def find_one(self, document_id: str, store_id: str) -> DocumentStoreLink | None: ...
+
+    async def delete(self, document_id: str, store_id: str) -> bool: ...
+
+
 class AnalysisRepository(Protocol):
     """Port for analysis job persistence."""
 

document-parser/domain/value_objects.py

@@ -14,6 +14,53 @@ DEFAULT_PAGE_WIDTH: float = 612.0
 DEFAULT_PAGE_HEIGHT: float = 792.0
 
 
+class DocumentLifecycleState(StrEnum):
+    """Canonical lifecycle of a Document in Docling Studio.
+
+    Distinct from `AnalysisStatus` (which describes a single conversion
+    attempt). The lifecycle describes the document as a whole:
+
+      Uploaded   raw file persisted, no parse yet
+      Parsed     conversion produced a document tree
+      Chunked    chunker produced a draft chunkset (pre-store)
+      Ingested   chunkset has been embedded into at least one store
+      Stale      a chunkset was edited after a successful push and the
+                 corresponding store no longer matches (#204)
+      Failed     a pipeline step failed; recoverable by retry
+
+    Allowed transitions live in `domain.lifecycle._TRANSITIONS`.
+    """
+
+    UPLOADED = "Uploaded"
+    PARSED = "Parsed"
+    CHUNKED = "Chunked"
+    INGESTED = "Ingested"
+    STALE = "Stale"
+    FAILED = "Failed"
+
+
+class StoreKind(StrEnum):
+    """Backing technology of a Store. Today only OpenSearch is implemented;
+    the enum is here so future backends (Pinecone, Qdrant, pgvector) can be
+    added without touching the persistence schema."""
+
+    OPENSEARCH = "opensearch"
+
+
+class DocumentStoreLinkState(StrEnum):
+    """State of a (document, store) ingestion link.
+
+    Distinct from `DocumentLifecycleState` — the document lifecycle is the
+    aggregate over all per-store links. A link is `Ingested` when its
+    chunkset hash matches the source; `Stale` when the source has drifted
+    after the last push; `Failed` when the last push attempt errored.
+    """
+
+    INGESTED = "Ingested"
+    STALE = "Stale"
+    FAILED = "Failed"
+
+
 @dataclass(frozen=True)
 class PageElement:
     type: str

document-parser/persistence/database.py

@@ -42,25 +42,90 @@ CREATE TABLE IF NOT EXISTS analysis_jobs (
 CREATE INDEX IF NOT EXISTS idx_analysis_jobs_status ON analysis_jobs(status);
 CREATE INDEX IF NOT EXISTS idx_analysis_jobs_created_at ON analysis_jobs(created_at);
 CREATE INDEX IF NOT EXISTS idx_documents_created_at ON documents(created_at);
+
+-- 0.6.0 — Per (document, store) ingestion state (#203).
+CREATE TABLE IF NOT EXISTS stores (
+    id          TEXT PRIMARY KEY,
+    name        TEXT NOT NULL UNIQUE,
+    slug        TEXT NOT NULL UNIQUE,
+    kind        TEXT NOT NULL,
+    embedder    TEXT NOT NULL,
+    config      TEXT NOT NULL DEFAULT '{}',
+    is_default  INTEGER NOT NULL DEFAULT 0,
+    created_at  TEXT NOT NULL DEFAULT (datetime('now'))
+);
+
+CREATE TABLE IF NOT EXISTS document_store_links (
+    id              TEXT PRIMARY KEY,
+    document_id     TEXT NOT NULL REFERENCES documents(id) ON DELETE CASCADE,
+    store_id        TEXT NOT NULL REFERENCES stores(id)    ON DELETE CASCADE,
+    state           TEXT NOT NULL,
+    chunkset_hash   TEXT,
+    last_push_at    TEXT,
+    last_run_id     TEXT,
+    error_message   TEXT,
+    UNIQUE (document_id, store_id)
+);
+
+CREATE INDEX IF NOT EXISTS idx_dsl_doc   ON document_store_links(document_id);
+CREATE INDEX IF NOT EXISTS idx_dsl_store ON document_store_links(store_id);
+CREATE INDEX IF NOT EXISTS idx_dsl_state ON document_store_links(state);
 """
 
 
-_MIGRATIONS = [
-    ("document_json", "ALTER TABLE analysis_jobs ADD COLUMN document_json TEXT"),
-    ("chunks_json", "ALTER TABLE analysis_jobs ADD COLUMN chunks_json TEXT"),
-    ("progress_current", "ALTER TABLE analysis_jobs ADD COLUMN progress_current INTEGER"),
-    ("progress_total", "ALTER TABLE analysis_jobs ADD COLUMN progress_total INTEGER"),
+# Column migrations: (table, column_name, ddl). Idempotent — applied only
+# when the column is missing from the live schema. Order matters when a
+# later migration depends on an earlier one (none today).
+_COLUMN_MIGRATIONS: list[tuple[str, str, str]] = [
+    ("analysis_jobs", "document_json", "ALTER TABLE analysis_jobs ADD COLUMN document_json TEXT"),
+    ("analysis_jobs", "chunks_json", "ALTER TABLE analysis_jobs ADD COLUMN chunks_json TEXT"),
+    (
+        "analysis_jobs",
+        "progress_current",
+        "ALTER TABLE analysis_jobs ADD COLUMN progress_current INTEGER",
+    ),
+    (
+        "analysis_jobs",
+        "progress_total",
+        "ALTER TABLE analysis_jobs ADD COLUMN progress_total INTEGER",
+    ),
+    # 0.6.0 — Document lifecycle state machine (#202).
+    (
+        "documents",
+        "lifecycle_state",
+        "ALTER TABLE documents ADD COLUMN lifecycle_state TEXT NOT NULL DEFAULT 'Uploaded'",
+    ),
+    (
+        "documents",
+        "lifecycle_state_at",
+        "ALTER TABLE documents ADD COLUMN lifecycle_state_at TEXT",
+    ),
+]
+
+# DDL statements run after column migrations — typically CREATE INDEX
+# IF NOT EXISTS for indexes on freshly-added columns.
+_POST_MIGRATION_DDL: list[str] = [
+    "CREATE INDEX IF NOT EXISTS idx_documents_lifecycle_state ON documents(lifecycle_state)",
 ]
 
 
 async def _run_migrations(db: aiosqlite.Connection) -> None:
-    """Add columns that may be missing in older databases."""
-    cursor = await db.execute("PRAGMA table_info(analysis_jobs)")
-    existing = {row[1] for row in await cursor.fetchall()}
-    for col_name, ddl in _MIGRATIONS:
-        if col_name not in existing:
+    """Apply additive column migrations, then any post-migration DDL.
+
+    Existing columns are detected via PRAGMA `table_info`, so re-running
+    the migration on an already-up-to-date DB is a no-op.
+    """
+    columns_by_table: dict[str, set[str]] = {}
+    for table, col_name, ddl in _COLUMN_MIGRATIONS:
+        if table not in columns_by_table:
+            cursor = await db.execute(f"PRAGMA table_info({table})")
+            columns_by_table[table] = {row[1] for row in await cursor.fetchall()}
+        if col_name not in columns_by_table[table]:
             await db.execute(ddl)
-            logger.info("Migration: added column %s to analysis_jobs", col_name)
+            columns_by_table[table].add(col_name)
+            logger.info("Migration: added column %s to %s", col_name, table)
+    for ddl in _POST_MIGRATION_DDL:
+        await db.execute(ddl)
     await db.commit()
 
 
@@ -70,10 +135,27 @@ async def init_db() -> None:
     async with aiosqlite.connect(DB_PATH) as db:
         await db.executescript(_SCHEMA)
         await _run_migrations(db)
+        await _seed_default_store(db)
         await db.commit()
     logger.info("Database initialized at %s", DB_PATH)
 
 
+async def _seed_default_store(db: aiosqlite.Connection) -> None:
+    """Insert the canonical `default` store on first boot.
+
+    Idempotent — uses INSERT OR IGNORE keyed on the unique slug. The
+    embedder is read from the DEFAULT_EMBEDDER env var with a sensible
+    fallback so existing single-index deployments keep working.
+    """
+    embedder = os.environ.get("DEFAULT_EMBEDDER", "bge-m3")
+    await db.execute(
+        """INSERT OR IGNORE INTO stores
+           (id, name, slug, kind, embedder, config, is_default, created_at)
+           VALUES (?, ?, ?, ?, ?, ?, ?, datetime('now'))""",
+        ("default", "default", "default", "opensearch", embedder, "{}", 1),
+    )
+
+
 async def get_db() -> aiosqlite.Connection:
     """Open a new database connection with row factory and FK enforcement."""
     db = await aiosqlite.connect(DB_PATH)

document-parser/persistence/document_repo.py

@@ -5,15 +5,34 @@ from __future__ import annotations
 from datetime import UTC, datetime
 
 from domain.models import Document
+from domain.value_objects import DocumentLifecycleState
 from persistence.database import get_connection
 
 
+def _parse_iso(value: str | None) -> datetime | None:
+    if value is None or value == "":
+        return None
+    parsed = datetime.fromisoformat(value)
+    if parsed.tzinfo is None:
+        parsed = parsed.replace(tzinfo=UTC)
+    return parsed
+
+
 def _row_to_document(row) -> Document:
     created = row["created_at"]
     if isinstance(created, str):
         created = datetime.fromisoformat(created)
     if created.tzinfo is None:
         created = created.replace(tzinfo=UTC)
+    # `_run_migrations` guarantees both lifecycle columns exist by the time
+    # any read happens, so direct access is safe.
+    lifecycle_value = row["lifecycle_state"]
+    lifecycle_state = (
+        DocumentLifecycleState(lifecycle_value)
+        if lifecycle_value
+        else DocumentLifecycleState.UPLOADED
+    )
+    lifecycle_state_at = _parse_iso(row["lifecycle_state_at"])
     return Document(
         id=row["id"],
         filename=row["filename"],
@@ -22,6 +41,8 @@ def _row_to_document(row) -> Document:
         page_count=row["page_count"],
         storage_path=row["storage_path"],
         created_at=created,
+        lifecycle_state=lifecycle_state,
+        lifecycle_state_at=lifecycle_state_at,
     )
 
 
@@ -32,8 +53,10 @@ class SqliteDocumentRepository:
         """Persist a new document record."""
         async with get_connection() as db:
             await db.execute(
-                """INSERT INTO documents (id, filename, content_type, file_size, page_count, storage_path, created_at)
-                   VALUES (?, ?, ?, ?, ?, ?, ?)""",
+                """INSERT INTO documents (
+                       id, filename, content_type, file_size, page_count,
+                       storage_path, created_at, lifecycle_state, lifecycle_state_at
+                   ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)""",
                 (
                     doc.id,
                     doc.filename,
@@ -42,6 +65,8 @@ class SqliteDocumentRepository:
                     doc.page_count,
                     doc.storage_path,
                     str(doc.created_at),
+                    doc.lifecycle_state.value,
+                    str(doc.lifecycle_state_at) if doc.lifecycle_state_at else None,
                 ),
             )
             await db.commit()
@@ -72,6 +97,25 @@ class SqliteDocumentRepository:
             )
             await db.commit()
 
+    async def update_lifecycle(
+        self,
+        doc_id: str,
+        state: DocumentLifecycleState,
+        at: datetime,
+    ) -> None:
+        """Persist a lifecycle state transition for a document.
+
+        Callers must have already validated the transition via
+        `Document.transition_to()` — this method does not check the
+        transition graph; it just writes.
+        """
+        async with get_connection() as db:
+            await db.execute(
+                "UPDATE documents SET lifecycle_state = ?, lifecycle_state_at = ? WHERE id = ?",
+                (state.value, str(at), doc_id),
+            )
+            await db.commit()
+
     async def delete(self, doc_id: str) -> bool:
         """Delete a document by ID. Returns True if a row was removed."""
         async with get_connection() as db:

document-parser/persistence/document_store_link_repo.py

@@ -0,0 +1,98 @@
+"""Document-Store link repository — SQLite CRUD on `document_store_links`."""
+
+from __future__ import annotations
+
+from datetime import UTC, datetime
+
+from domain.models import DocumentStoreLink
+from domain.value_objects import DocumentStoreLinkState
+from persistence.database import get_connection
+
+
+def _parse_iso(value: str | None) -> datetime | None:
+    if value is None or value == "":
+        return None
+    parsed = datetime.fromisoformat(value)
+    if parsed.tzinfo is None:
+        parsed = parsed.replace(tzinfo=UTC)
+    return parsed
+
+
+def _row_to_link(row) -> DocumentStoreLink:
+    return DocumentStoreLink(
+        id=row["id"],
+        document_id=row["document_id"],
+        store_id=row["store_id"],
+        state=DocumentStoreLinkState(row["state"]),
+        chunkset_hash=row["chunkset_hash"],
+        last_push_at=_parse_iso(row["last_push_at"]),
+        last_run_id=row["last_run_id"],
+        error_message=row["error_message"],
+    )
+
+
+class SqliteDocumentStoreLinkRepository:
+    """SQLite implementation of the DocumentStoreLinkRepository port."""
+
+    async def upsert(self, link: DocumentStoreLink) -> None:
+        """Insert a new link or update the existing (document_id, store_id) row."""
+        async with get_connection() as db:
+            await db.execute(
+                """INSERT INTO document_store_links
+                   (id, document_id, store_id, state, chunkset_hash,
+                    last_push_at, last_run_id, error_message)
+                   VALUES (?, ?, ?, ?, ?, ?, ?, ?)
+                   ON CONFLICT(document_id, store_id) DO UPDATE SET
+                     state         = excluded.state,
+                     chunkset_hash = excluded.chunkset_hash,
+                     last_push_at  = excluded.last_push_at,
+                     last_run_id   = excluded.last_run_id,
+                     error_message = excluded.error_message""",
+                (
+                    link.id,
+                    link.document_id,
+                    link.store_id,
+                    link.state.value,
+                    link.chunkset_hash,
+                    str(link.last_push_at) if link.last_push_at else None,
+                    link.last_run_id,
+                    link.error_message,
+                ),
+            )
+            await db.commit()
+
+    async def find_for_document(self, document_id: str) -> list[DocumentStoreLink]:
+        async with get_connection() as db:
+            cursor = await db.execute(
+                "SELECT * FROM document_store_links WHERE document_id = ?",
+                (document_id,),
+            )
+            rows = await cursor.fetchall()
+            return [_row_to_link(r) for r in rows]
+
+    async def find_for_store(self, store_id: str) -> list[DocumentStoreLink]:
+        async with get_connection() as db:
+            cursor = await db.execute(
+                "SELECT * FROM document_store_links WHERE store_id = ?",
+                (store_id,),
+            )
+            rows = await cursor.fetchall()
+            return [_row_to_link(r) for r in rows]
+
+    async def find_one(self, document_id: str, store_id: str) -> DocumentStoreLink | None:
+        async with get_connection() as db:
+            cursor = await db.execute(
+                "SELECT * FROM document_store_links WHERE document_id = ? AND store_id = ?",
+                (document_id, store_id),
+            )
+            row = await cursor.fetchone()
+            return _row_to_link(row) if row else None
+
+    async def delete(self, document_id: str, store_id: str) -> bool:
+        async with get_connection() as db:
+            cursor = await db.execute(
+                "DELETE FROM document_store_links WHERE document_id = ? AND store_id = ?",
+                (document_id, store_id),
+            )
+            await db.commit()
+            return cursor.rowcount > 0

document-parser/persistence/store_repo.py

@@ -0,0 +1,83 @@
+"""Store repository — SQLite CRUD for the `stores` table."""
+
+from __future__ import annotations
+
+import json
+from datetime import UTC, datetime
+
+from domain.models import Store
+from domain.value_objects import StoreKind
+from persistence.database import get_connection
+
+
+def _row_to_store(row) -> Store:
+    created = row["created_at"]
+    if isinstance(created, str):
+        created = datetime.fromisoformat(created)
+    if created.tzinfo is None:
+        created = created.replace(tzinfo=UTC)
+    config_raw = row["config"] or "{}"
+    try:
+        config = json.loads(config_raw)
+    except (TypeError, ValueError):
+        config = {}
+    return Store(
+        id=row["id"],
+        name=row["name"],
+        slug=row["slug"],
+        kind=StoreKind(row["kind"]),
+        embedder=row["embedder"],
+        config=config,
+        is_default=bool(row["is_default"]),
+        created_at=created,
+    )
+
+
+class SqliteStoreRepository:
+    """SQLite implementation of the StoreRepository port."""
+
+    async def insert(self, store: Store) -> None:
+        async with get_connection() as db:
+            await db.execute(
+                """INSERT INTO stores
+                   (id, name, slug, kind, embedder, config, is_default, created_at)
+                   VALUES (?, ?, ?, ?, ?, ?, ?, ?)""",
+                (
+                    store.id,
+                    store.name,
+                    store.slug,
+                    store.kind.value,
+                    store.embedder,
+                    json.dumps(store.config),
+                    1 if store.is_default else 0,
+                    str(store.created_at),
+                ),
+            )
+            await db.commit()
+
+    async def find_all(self) -> list[Store]:
+        async with get_connection() as db:
+            cursor = await db.execute("SELECT * FROM stores ORDER BY is_default DESC, name ASC")
+            rows = await cursor.fetchall()
+            return [_row_to_store(r) for r in rows]
+
+    async def find_by_slug(self, slug: str) -> Store | None:
+        async with get_connection() as db:
+            cursor = await db.execute("SELECT * FROM stores WHERE slug = ?", (slug,))
+            row = await cursor.fetchone()
+            return _row_to_store(row) if row else None
+
+    async def find_by_id(self, store_id: str) -> Store | None:
+        async with get_connection() as db:
+            cursor = await db.execute("SELECT * FROM stores WHERE id = ?", (store_id,))
+            row = await cursor.fetchone()
+            return _row_to_store(row) if row else None
+
+    async def get_default(self) -> Store | None:
+        """Return the seeded `default` store, if any."""
+        async with get_connection() as db:
+            cursor = await db.execute(
+                "SELECT * FROM stores WHERE is_default = 1 ORDER BY created_at ASC LIMIT 1"
+            )
+            row = await cursor.fetchone()
+            return _row_to_store(row) if row else None

document-parser/services/analysis_service.py

@@ -16,6 +16,7 @@ from typing import TYPE_CHECKING
 
 import pypdfium2 as pdfium
 
+from domain.exceptions import InvalidLifecycleTransitionError
 from domain.models import AnalysisJob, AnalysisStatus
 from domain.services import classify_error, merge_results
 from domain.value_objects import (
@@ -23,6 +24,7 @@ from domain.value_objects import (
     ChunkResult,
     ConversionOptions,
     ConversionResult,
+    DocumentLifecycleState,
 )
 
 if TYPE_CHECKING:
@@ -162,6 +164,10 @@ class AnalysisService:
         chunks_json = json.dumps([_chunk_to_dict(c) for c in chunks])
         await self._analysis_repo.update_chunks(job_id, chunks_json)
 
+        # Re-chunk drives the document into Chunked (idempotent if already
+        # Chunked; #204 will mark per-store links Stale separately).
+        await self._transition_document(job.document_id, DocumentLifecycleState.CHUNKED)
+
         return chunks
 
     async def update_chunk_text(self, job_id: str, chunk_index: int, text: str) -> list[dict]:
@@ -292,11 +298,47 @@ class AnalysisService:
             if job:
                 job.mark_failed(error)
                 await self._analysis_repo.update_status(job)
+                await self._transition_document(job.document_id, DocumentLifecycleState.FAILED)
         except OSError:
             logger.exception("Database I/O error marking job %s as failed", job_id)
         except Exception:
             logger.exception("Unexpected error marking job %s as failed", job_id)
 
+    async def _transition_document(
+        self,
+        document_id: str,
+        target: DocumentLifecycleState,
+    ) -> None:
+        """Drive a Document lifecycle transition (#202).
+
+        Idempotent on the target — if the document is already in the
+        requested state, no write happens. Invalid transitions are
+        logged at WARNING and swallowed so a lifecycle hiccup does not
+        crash an otherwise-successful pipeline run.
+        """
+        doc = await self._document_repo.find_by_id(document_id)
+        if doc is None:
+            return
+        if doc.lifecycle_state == target:
+            return
+        try:
+            event = doc.transition_to(target)
+        except InvalidLifecycleTransitionError:
+            logger.warning(
+                "Skipped invalid lifecycle transition for doc %s: %s -> %s",
+                document_id,
+                doc.lifecycle_state.value,
+                target.value,
+            )
+            return
+        await self._document_repo.update_lifecycle(document_id, event.current, event.at)
+        logger.info(
+            "lifecycle_changed doc_id=%s from=%s to=%s",
+            document_id,
+            event.previous.value,
+            event.current.value,
+        )
+
     async def _run_analysis(
         self,
         job_id: str,
@@ -379,6 +421,15 @@ class AnalysisService:
         if result.page_count:
             await self._document_repo.update_page_count(job.document_id, result.page_count)
 
+        # Drive the document lifecycle (#202): chunks present → Chunked,
+        # otherwise → Parsed.
+        target_state = (
+            DocumentLifecycleState.CHUNKED
+            if chunks_json is not None
+            else DocumentLifecycleState.PARSED
+        )
+        await self._transition_document(job.document_id, target_state)
+
         await self._write_tree_to_neo4j(job, result.document_json)
 
         logger.info("Analysis completed: %s (%d pages)", job_id, result.page_count)

document-parser/tests/test_chunking.py

@@ -10,7 +10,7 @@ import pytest
 from fastapi.testclient import TestClient
 
 from api.schemas import ChunkBboxResponse, ChunkingOptionsRequest, ChunkResponse, RechunkRequest
-from domain.models import AnalysisJob, AnalysisStatus
+from domain.models import AnalysisJob, AnalysisStatus, Document
 from domain.value_objects import ChunkBbox, ChunkingOptions, ChunkResult
 from main import app
 
@@ -529,6 +529,13 @@ class TestRemoteChunkingPath:
         )
         analysis_repo.find_by_id = AsyncMock(return_value=job)
         analysis_repo.update_chunks = AsyncMock(return_value=True)
+        # rechunk() now drives a Document lifecycle transition (#202), so
+        # the document_repo must return a real Document and accept the
+        # update_lifecycle write.
+        document_repo.find_by_id = AsyncMock(
+            return_value=Document(id="d1", filename="test.pdf", storage_path="/tmp/test.pdf")
+        )
+        document_repo.update_lifecycle = AsyncMock()
 
         chunks = await service.rechunk(
             "j-remote",

document-parser/tests/test_lifecycle.py

@@ -0,0 +1,129 @@
+"""Tests for the Document lifecycle state machine (#202)."""
+
+from __future__ import annotations
+
+from datetime import UTC, datetime
+
+import pytest
+
+from domain.events import DocumentLifecycleChanged
+from domain.exceptions import InvalidLifecycleTransitionError
+from domain.lifecycle import assert_transition, is_allowed_transition
+from domain.models import Document
+from domain.value_objects import DocumentLifecycleState
+
+ALLOWED_TRANSITIONS = [
+    # Uploaded
+    (DocumentLifecycleState.UPLOADED, DocumentLifecycleState.PARSED),
+    (DocumentLifecycleState.UPLOADED, DocumentLifecycleState.CHUNKED),
+    (DocumentLifecycleState.UPLOADED, DocumentLifecycleState.FAILED),
+    # Parsed
+    (DocumentLifecycleState.PARSED, DocumentLifecycleState.PARSED),
+    (DocumentLifecycleState.PARSED, DocumentLifecycleState.CHUNKED),
+    (DocumentLifecycleState.PARSED, DocumentLifecycleState.FAILED),
+    # Chunked
+    (DocumentLifecycleState.CHUNKED, DocumentLifecycleState.CHUNKED),
+    (DocumentLifecycleState.CHUNKED, DocumentLifecycleState.INGESTED),
+    (DocumentLifecycleState.CHUNKED, DocumentLifecycleState.FAILED),
+    # Ingested
+    (DocumentLifecycleState.INGESTED, DocumentLifecycleState.STALE),
+    (DocumentLifecycleState.INGESTED, DocumentLifecycleState.CHUNKED),
+    (DocumentLifecycleState.INGESTED, DocumentLifecycleState.INGESTED),
+    (DocumentLifecycleState.INGESTED, DocumentLifecycleState.FAILED),
+    # Stale
+    (DocumentLifecycleState.STALE, DocumentLifecycleState.INGESTED),
+    (DocumentLifecycleState.STALE, DocumentLifecycleState.CHUNKED),
+    (DocumentLifecycleState.STALE, DocumentLifecycleState.FAILED),
+    # Failed (recoverable)
+    (DocumentLifecycleState.FAILED, DocumentLifecycleState.UPLOADED),
+    (DocumentLifecycleState.FAILED, DocumentLifecycleState.PARSED),
+    (DocumentLifecycleState.FAILED, DocumentLifecycleState.CHUNKED),
+]
+
+
+@pytest.mark.parametrize(("source", "target"), ALLOWED_TRANSITIONS)
+def test_allowed_transitions_pass(
+    source: DocumentLifecycleState, target: DocumentLifecycleState
+) -> None:
+    assert is_allowed_transition(source, target)
+    # assert_transition does not raise.
+    assert_transition(source, target)
+
+
+def test_disallowed_transitions_are_rejected() -> None:
+    """Spot-check the most surprising disallowed pairs.
+
+    Exhaustive enumeration of every disallowed pair would just mirror the
+    transition table; this list captures the cases a reader is most
+    likely to argue about.
+    """
+    forbidden = [
+        # Uploaded cannot skip directly to Ingested or Stale.
+        (DocumentLifecycleState.UPLOADED, DocumentLifecycleState.INGESTED),
+        (DocumentLifecycleState.UPLOADED, DocumentLifecycleState.STALE),
+        # Parsed cannot become Ingested without going through Chunked.
+        (DocumentLifecycleState.PARSED, DocumentLifecycleState.INGESTED),
+        # Stale is not directly reachable from Parsed (no per-store yet).
+        (DocumentLifecycleState.PARSED, DocumentLifecycleState.STALE),
+        # Failed cannot be reached as a "self-loop" — it always reflects a
+        # new failure, never an idempotent re-mark.
+        (DocumentLifecycleState.FAILED, DocumentLifecycleState.FAILED),
+        # Failed cannot jump directly to Ingested or Stale — must re-do
+        # the relevant pipeline step first.
+        (DocumentLifecycleState.FAILED, DocumentLifecycleState.INGESTED),
+        (DocumentLifecycleState.FAILED, DocumentLifecycleState.STALE),
+    ]
+    for source, target in forbidden:
+        assert not is_allowed_transition(source, target)
+        with pytest.raises(InvalidLifecycleTransitionError) as excinfo:
+            assert_transition(source, target)
+        assert excinfo.value.source == source
+        assert excinfo.value.target == target
+
+
+def test_document_default_state_is_uploaded() -> None:
+    doc = Document(filename="test.pdf", storage_path="/tmp/test.pdf")
+    assert doc.lifecycle_state == DocumentLifecycleState.UPLOADED
+    assert doc.lifecycle_state_at is None
+
+
+def test_transition_returns_event_and_mutates_state() -> None:
+    doc = Document(id="doc-1", filename="t.pdf", storage_path="/tmp/t.pdf")
+    before = datetime(2026, 4, 29, 10, tzinfo=UTC)
+
+    event = doc.transition_to(DocumentLifecycleState.PARSED, now=before)
+
+    assert isinstance(event, DocumentLifecycleChanged)
+    assert event.document_id == "doc-1"
+    assert event.previous == DocumentLifecycleState.UPLOADED
+    assert event.current == DocumentLifecycleState.PARSED
+    assert event.at == before
+    # State mutated on the dataclass.
+    assert doc.lifecycle_state == DocumentLifecycleState.PARSED
+    assert doc.lifecycle_state_at == before
+
+
+def test_invalid_transition_does_not_mutate_state() -> None:
+    doc = Document(id="doc-1", filename="t.pdf", storage_path="/tmp/t.pdf")
+    assert doc.lifecycle_state == DocumentLifecycleState.UPLOADED
+
+    with pytest.raises(InvalidLifecycleTransitionError):
+        doc.transition_to(DocumentLifecycleState.STALE)
+
+    # State is untouched.
+    assert doc.lifecycle_state == DocumentLifecycleState.UPLOADED
+    assert doc.lifecycle_state_at is None
+
+
+def test_idempotent_self_transitions_emit_event() -> None:
+    """Self-loops (re-parse, re-chunk, re-push) are explicitly allowed
+    so the pipeline can drive transitions without checking the source
+    state first. They still emit an event for observability."""
+    doc = Document(id="doc-1", filename="t.pdf", storage_path="/tmp/t.pdf")
+    doc.transition_to(DocumentLifecycleState.CHUNKED)
+    assert doc.lifecycle_state == DocumentLifecycleState.CHUNKED
+
+    event = doc.transition_to(DocumentLifecycleState.CHUNKED)
+
+    assert event.previous == DocumentLifecycleState.CHUNKED
+    assert event.current == DocumentLifecycleState.CHUNKED

document-parser/tests/test_lifecycle_aggregation.py

@@ -0,0 +1,72 @@
+"""Tests for the document lifecycle aggregation rule (#203)."""
+
+from __future__ import annotations
+
+from domain.lifecycle_aggregation import aggregate_lifecycle
+from domain.models import DocumentStoreLink
+from domain.value_objects import DocumentLifecycleState, DocumentStoreLinkState
+
+
+def _link(state: DocumentStoreLinkState) -> DocumentStoreLink:
+    return DocumentStoreLink(
+        id=f"link-{state.value}",
+        document_id="doc-1",
+        store_id=f"store-{state.value}",
+        state=state,
+    )
+
+
+def test_no_links_returns_fallback() -> None:
+    assert (
+        aggregate_lifecycle([], fallback=DocumentLifecycleState.CHUNKED)
+        == DocumentLifecycleState.CHUNKED
+    )
+
+
+def test_single_ingested_link_makes_doc_ingested() -> None:
+    assert (
+        aggregate_lifecycle(
+            [_link(DocumentStoreLinkState.INGESTED)],
+            fallback=DocumentLifecycleState.CHUNKED,
+        )
+        == DocumentLifecycleState.INGESTED
+    )
+
+
+def test_any_stale_link_makes_doc_stale() -> None:
+    """Stale outranks Ingested — a doc with one stale store is considered stale."""
+    assert (
+        aggregate_lifecycle(
+            [
+                _link(DocumentStoreLinkState.INGESTED),
+                _link(DocumentStoreLinkState.STALE),
+            ],
+            fallback=DocumentLifecycleState.CHUNKED,
+        )
+        == DocumentLifecycleState.STALE
+    )
+
+
+def test_any_failed_link_makes_doc_failed() -> None:
+    """Failed outranks every other link state."""
+    assert (
+        aggregate_lifecycle(
+            [
+                _link(DocumentStoreLinkState.INGESTED),
+                _link(DocumentStoreLinkState.STALE),
+                _link(DocumentStoreLinkState.FAILED),
+            ],
+            fallback=DocumentLifecycleState.CHUNKED,
+        )
+        == DocumentLifecycleState.FAILED
+    )
+
+
+def test_only_failed_link_makes_doc_failed() -> None:
+    assert (
+        aggregate_lifecycle(
+            [_link(DocumentStoreLinkState.FAILED)],
+            fallback=DocumentLifecycleState.CHUNKED,
+        )
+        == DocumentLifecycleState.FAILED
+    )

document-parser/tests/test_repos.py

@@ -1,10 +1,11 @@
 """Tests for persistence repositories using a temporary SQLite database."""
 
-from datetime import datetime
+from datetime import UTC, datetime
 
 import pytest
 
 from domain.models import AnalysisJob, AnalysisStatus, Document
+from domain.value_objects import DocumentLifecycleState
 from persistence.analysis_repo import SqliteAnalysisRepository
 from persistence.database import init_db
 from persistence.document_repo import SqliteDocumentRepository
@@ -81,6 +82,46 @@ class TestDocumentRepo:
         deleted = await document_repo.delete("nonexistent")
         assert deleted is False
 
+    async def test_default_lifecycle_state_is_uploaded(self, document_repo):
+        """Fresh document round-trip preserves the default Uploaded state."""
+        doc = Document(id="doc-1", filename="t.pdf", storage_path="/tmp/t.pdf")
+        await document_repo.insert(doc)
+
+        found = await document_repo.find_by_id("doc-1")
+        assert found is not None
+        assert found.lifecycle_state == DocumentLifecycleState.UPLOADED
+        assert found.lifecycle_state_at is None
+
+    async def test_update_lifecycle_persists_state_and_timestamp(self, document_repo):
+        doc = Document(id="doc-1", filename="t.pdf", storage_path="/tmp/t.pdf")
+        await document_repo.insert(doc)
+
+        when = datetime(2026, 4, 29, 12, 0, tzinfo=UTC)
+        await document_repo.update_lifecycle("doc-1", DocumentLifecycleState.PARSED, when)
+
+        found = await document_repo.find_by_id("doc-1")
+        assert found is not None
+        assert found.lifecycle_state == DocumentLifecycleState.PARSED
+        assert found.lifecycle_state_at is not None
+        assert found.lifecycle_state_at == when
+
+    async def test_lifecycle_state_round_trips_for_each_value(self, document_repo):
+        """Every enum value must serialize cleanly into and out of SQLite."""
+        when = datetime(2026, 4, 29, 12, 0, tzinfo=UTC)
+        for value in DocumentLifecycleState:
+            doc = Document(
+                id=f"doc-{value.value}",
+                filename="t.pdf",
+                storage_path="/tmp/t.pdf",
+                lifecycle_state=value,
+                lifecycle_state_at=when,
+            )
+            await document_repo.insert(doc)
+
+            found = await document_repo.find_by_id(f"doc-{value.value}")
+            assert found is not None
+            assert found.lifecycle_state == value
+
 
 class TestAnalysisRepo:
     async def _insert_doc(self, document_repo):

document-parser/tests/test_store_repo.py

@@ -0,0 +1,190 @@
+"""Tests for the Store and DocumentStoreLink repositories (#203)."""
+
+from __future__ import annotations
+
+from datetime import UTC, datetime
+
+import pytest
+
+from domain.models import Document, DocumentStoreLink, Store
+from domain.value_objects import DocumentStoreLinkState, StoreKind
+from persistence.database import init_db
+from persistence.document_repo import SqliteDocumentRepository
+from persistence.document_store_link_repo import SqliteDocumentStoreLinkRepository
+from persistence.store_repo import SqliteStoreRepository
+
+
+@pytest.fixture(autouse=True)
+async def setup_db(monkeypatch, tmp_path):
+    db_path = str(tmp_path / "test.db")
+    monkeypatch.setattr("persistence.database.DB_PATH", db_path)
+    await init_db()
+    yield
+
+
+@pytest.fixture
+def store_repo():
+    return SqliteStoreRepository()
+
+
+@pytest.fixture
+def link_repo():
+    return SqliteDocumentStoreLinkRepository()
+
+
+@pytest.fixture
+def document_repo():
+    return SqliteDocumentRepository()
+
+
+class TestStoreRepo:
+    async def test_default_store_seeded_on_init(self, store_repo):
+        """init_db() must seed exactly one `default` store on a fresh DB."""
+        default = await store_repo.get_default()
+        assert default is not None
+        assert default.slug == "default"
+        assert default.is_default is True
+        assert default.kind == StoreKind.OPENSEARCH
+
+    async def test_seed_is_idempotent(self, store_repo):
+        """Re-running init_db() must not create a second default store."""
+        await init_db()
+        await init_db()
+        all_stores = await store_repo.find_all()
+        slugs = [s.slug for s in all_stores]
+        assert slugs.count("default") == 1
+
+    async def test_insert_and_find_by_slug(self, store_repo):
+        store = Store(
+            id="s-rh",
+            name="rh-corpus-v3",
+            slug="rh-corpus-v3",
+            kind=StoreKind.OPENSEARCH,
+            embedder="bge-m3",
+            config={"index_name": "rh-corpus-v3"},
+        )
+        await store_repo.insert(store)
+
+        found = await store_repo.find_by_slug("rh-corpus-v3")
+        assert found is not None
+        assert found.embedder == "bge-m3"
+        assert found.config == {"index_name": "rh-corpus-v3"}
+
+    async def test_find_all_orders_default_first(self, store_repo):
+        await store_repo.insert(
+            Store(
+                id="s-rh",
+                name="rh",
+                slug="rh",
+                kind=StoreKind.OPENSEARCH,
+                embedder="bge-m3",
+            )
+        )
+        await store_repo.insert(
+            Store(
+                id="s-legal",
+                name="legal",
+                slug="legal",
+                kind=StoreKind.OPENSEARCH,
+                embedder="bge-m3",
+            )
+        )
+        all_stores = await store_repo.find_all()
+        assert all_stores[0].slug == "default"  # seeded default comes first
+
+
+class TestDocumentStoreLinkRepo:
+    async def _seed_doc(self, document_repo, doc_id: str = "doc-1") -> Document:
+        doc = Document(id=doc_id, filename="t.pdf", storage_path="/tmp/t.pdf")
+        await document_repo.insert(doc)
+        return doc
+
+    async def test_upsert_creates_then_updates(self, link_repo, document_repo):
+        await self._seed_doc(document_repo)
+        link = DocumentStoreLink(
+            id="l-1",
+            document_id="doc-1",
+            store_id="default",
+            state=DocumentStoreLinkState.INGESTED,
+        )
+        await link_repo.upsert(link)
+
+        # Update same (doc, store) — no second row.
+        link.mark_ingested(
+            hash_="abc123",
+            at=datetime(2026, 4, 29, 12, tzinfo=UTC),
+            run_id="run-1",
+        )
+        await link_repo.upsert(link)
+
+        all_for_doc = await link_repo.find_for_document("doc-1")
+        assert len(all_for_doc) == 1
+        assert all_for_doc[0].chunkset_hash == "abc123"
+        assert all_for_doc[0].last_run_id == "run-1"
+
+    async def test_unique_constraint_on_doc_store_pair(self, link_repo, document_repo):
+        """Two links with the same (doc, store) collapse to one via upsert."""
+        await self._seed_doc(document_repo)
+        await link_repo.upsert(
+            DocumentStoreLink(
+                id="l-1",
+                document_id="doc-1",
+                store_id="default",
+                state=DocumentStoreLinkState.INGESTED,
+            )
+        )
+        await link_repo.upsert(
+            DocumentStoreLink(
+                id="l-2",
+                document_id="doc-1",
+                store_id="default",
+                state=DocumentStoreLinkState.STALE,
+            )
+        )
+        rows = await link_repo.find_for_document("doc-1")
+        assert len(rows) == 1
+        assert rows[0].state == DocumentStoreLinkState.STALE
+
+    async def test_find_one_returns_none_when_absent(self, link_repo, document_repo):
+        await self._seed_doc(document_repo)
+        assert await link_repo.find_one("doc-1", "default") is None
+
+    async def test_cascade_delete_when_doc_removed(self, link_repo, document_repo):
+        await self._seed_doc(document_repo)
+        await link_repo.upsert(
+            DocumentStoreLink(
+                id="l-1",
+                document_id="doc-1",
+                store_id="default",
+                state=DocumentStoreLinkState.INGESTED,
+            )
+        )
+        await document_repo.delete("doc-1")
+        rows = await link_repo.find_for_document("doc-1")
+        assert rows == []
+
+    async def test_state_round_trips(self, link_repo, document_repo):
+        await self._seed_doc(document_repo)
+        for state in DocumentStoreLinkState:
+            link = DocumentStoreLink(
+                id=f"l-{state.value}",
+                document_id="doc-1",
+                store_id=f"store-{state.value}",
+                state=state,
+            )
+            # Need a store row for FK; seed minimal stores.
+            from persistence.store_repo import SqliteStoreRepository
+
+            await SqliteStoreRepository().insert(
+                Store(
+                    id=f"store-{state.value}",
+                    name=f"s-{state.value}",
+                    slug=f"s-{state.value}",
+                    kind=StoreKind.OPENSEARCH,
+                    embedder="bge-m3",
+                )
+            )
+            await link_repo.upsert(link)
+            found = await link_repo.find_one("doc-1", f"store-{state.value}")
+            assert found is not None
+            assert found.state == state

frontend/Dockerfile

@@ -9,8 +9,6 @@ RUN npm run build
 FROM nginx:alpine
 
 COPY --from=build /app/dist /usr/share/nginx/html
-COPY nginx.conf.template /etc/nginx/templates/default.conf.template
-
-ENV NGINX_MAX_BODY_SIZE=200M
+COPY nginx.conf /etc/nginx/conf.d/default.conf
 
 EXPOSE 80

frontend/nginx.conf

@@ -20,6 +20,6 @@ server {
         proxy_set_header X-Real-IP $remote_addr;
         proxy_read_timeout 900s;
         proxy_send_timeout 900s;
-        client_max_body_size ${NGINX_MAX_BODY_SIZE};
+        client_max_body_size 5M;
     }
 }

frontend/src/shared/types.ts

@@ -1,3 +1,22 @@
+/**
+ * Canonical document lifecycle state — mirrors the backend enum
+ * `DocumentLifecycleState` (see `domain/value_objects.py`).
+ *
+ * - `Uploaded` raw file persisted, no parse yet
+ * - `Parsed`   conversion produced a document tree
+ * - `Chunked`  chunker produced a draft chunkset
+ * - `Ingested` chunkset has been embedded into at least one store
+ * - `Stale`    chunkset edited after a successful push (per-store concept)
+ * - `Failed`   a pipeline step failed; recoverable by retry
+ */
+export type DocumentLifecycleState =
+  | 'Uploaded'
+  | 'Parsed'
+  | 'Chunked'
+  | 'Ingested'
+  | 'Stale'
+  | 'Failed'
+
 export interface Document {
   id: string
   filename: string
@@ -5,6 +24,10 @@ export interface Document {
   fileSize: number | null
   pageCount: number | null
   createdAt: string
+  /** Canonical lifecycle state. Drives the status badge in `/docs`. */
+  lifecycleState: DocumentLifecycleState
+  /** ISO timestamp of the last lifecycle transition (UTC). */
+  lifecycleStateAt: string | null
 }
 
 export interface PipelineOptions {

nginx.conf

@@ -20,6 +20,6 @@ server {
         proxy_set_header X-Real-IP $remote_addr;
         proxy_read_timeout 900s;
         proxy_send_timeout 900s;
-        client_max_body_size ${NGINX_MAX_BODY_SIZE};
+        client_max_body_size 5M;
     }
 }