Commit graph

23 commits

Author SHA1 Message Date
Pier-Jean Malandrino
bef7ec4686 feat(reasoning): live docling-agent runner + UX polish
Backend — live runner
- New `POST /api/documents/:id/rag` endpoint. Loads `document_json` from
  SQLite, reconstructs the DoclingDocument, wraps the model id in
  `ModelIdentifier(ollama_name=...)`, and calls `agent._rag_loop`
  off-thread (blocking sync call). Returns a `RAGResult` in the shape
  the existing v1 import path already consumes, so the frontend overlay
  is fully reused.
- `_rag_loop` is private upstream; we call it because `run()` wraps the
  answer in a synthetic DoclingDocument and drops the iteration trace.
- Settings: `RAG_ENABLED`, `OLLAMA_HOST`, `RAG_MODEL_ID`. Router mounts
  unconditionally; handler 503s when the flag is off or deps aren't
  installed. `rag_available` surfaced in `/api/health`.
- Maps known docling-agent bugs to readable HTTP errors: 502 with
  "the model couldn't produce a parseable answer" when `_rag_loop`
  raises `IndexError` from `find_json_dicts([])[0]` after 3 + 3
  rejection-sampling retries (model-dependent).
- Tests: 11 cases (flag off, query empty, no analysis, happy path,
  model_id wrap, Ollama env, IndexError → 502, other errors → 500,
  deps missing → 503).

Backend — bug fix
- Default `BATCH_PAGE_SIZE` flipped from `10` to `0` to match the
  dataclass default. The old default silently dropped `document_json`
  (see `domain/services.merge_results`) for any doc > 10 pages, which
  broke the reasoning tunnel. Set `BATCH_PAGE_SIZE>0` explicitly on
  memory-constrained deploys if batching is wanted.

Frontend — runner UX
- `features/reasoning/api.ts:runReasoning()` — POST wrapper.
- `RunReasoningDialog.vue` — query textarea + optional model_id
  override. Blocks close while running, 20-40s loading state,
  synthesises a sidecar-shaped envelope so the panel surfaces query +
  model the same way an imported trace would.
- `ReasoningWorkspace.vue` — primary "Run reasoning" button; "Import
  trace" relegated to ghost secondary.
- Store: `runDialogOpen`, `running`, `setRunning`.

Frontend — answer polish
- Answer rendered through `marked` + DOMPurify (models emit markdown
  lists; `pre-wrap` rendered them as plain "1. …" strings).
- Dedicated answer block with orange border, "ANSWER" label, "Copy"
  button (clipboard + "Copied ✓" feedback).
- IterationCard: drop the duplicate `response` block (the main answer
  is authoritative); style reasons equal to `"fallback"` (docling-agent
  `select_from_failure` placeholder) as italic muted "— no structured
  rationale".

Frontend — node details contents
- Clicking a SectionHeader (or any node with compound children) lists
  its contained elements in `NodeDetailsPanel` under a new "Contents"
  block. Children come from the same `parentMap` used for Cytoscape
  compound parenting (explicit PARENT_OF + synthetic section scope),
  inverted once and cached as a computed.
- Click a child row → pan the viewport to it + swap the selection.

Housekeeping
- `cytoscape-navigator` removed from `package-lock.json` (follow-up
  from the minimap removal in the previous commit).
2026-04-21 17:11:54 +02:00
Pier-Jean Malandrino
dfbca40730 feat(neo4j): Day 1 — compose service, driver, schema bootstrap
Add Neo4j as an optional graph-native storage layer (ingestion profile).
Introduces infra/neo4j with a singleton async driver wrapper and an
idempotent bootstrap of constraints + indexes, wired into the FastAPI
lifespan. Integration tests skip when no live Neo4j is reachable.

Refs #186
2026-04-20 10:13:18 +02:00
Pier-Jean Malandrino
f2436290c5 refactor: centralize magic numbers for page dimensions, limits, and timeout (#168)
- Move DEFAULT_PAGE_WIDTH/HEIGHT to domain/value_objects.py and import in both converters
- Add opensearch_default_limit to Settings (configurable via OPENSEARCH_DEFAULT_LIMIT env var)
- Pass settings.conversion_timeout to ServeConverter, removing independent _DEFAULT_TIMEOUT
- Update OpenSearchStore to accept default_limit from Settings via constructor
2026-04-16 08:32:07 +00:00
Pier-Jean Malandrino
845425af62 chore: add Coming soon to batch chunking notice, set BATCH_PAGE_SIZE default to 10 2026-04-13 13:23:27 +02:00
Pier-Jean Malandrino
9602ae6d94 refactor: move BATCH_PAGE_SIZE default from Dockerfile to settings.py
Default value of 5 is now in the application code (settings.py) instead
of only in the Docker image ENV. Consistent across all deployment modes
(dev local, Docker, tests). Aligned docker-compose files and docs.
2026-04-13 11:32:33 +02:00
Pier-Jean Malandrino
a21daa24da feat: add embedding microservice and EmbeddingService port
Closes #71
2026-04-10 20:53:24 +02:00
Pier-Jean Malandrino
b968ea230e feat(architecture): define vector index metadata schema
Closes #68
2026-04-10 20:35:03 +02:00
Pier-Jean Malandrino
cfc5bb5c35 feat: add E2E API tests with Karate V2
Set up a full E2E test suite (39 scenarios) using Karate against
the real API stack. Hybrid architecture: domain-based features +
cross-domain workflows, with data-driven testing and callable helpers.

Structure:
- e2e/pom.xml: Maven + karate-core 1.5
- 3 helpers (upload, analyze+poll, cleanup)
- 3 JSON schemas (health, document, analysis)
- 12 feature files across health, documents, analyses, workflows
- Tags: @smoke (2), @regression (35), @e2e (2)
- generate-test-data.py: fpdf2-based PDF generation (no binaries)

Also adds:
- RATE_LIMIT_RPM env var to make rate limiter configurable (0=disabled)
- CI job e2e with needs: [backend, frontend]
- e2e/ in .dockerignore

Closes #119
2026-04-08 13:47:03 +02:00
Pier-Jean Malandrino
704ba550d4 feat: make document max size configurable via MAX_FILE_SIZE_MB env var
Replace hardcoded 5 MB upload limit with a configurable setting.
Backend exposes the value via /api/health, frontend reads it
dynamically for validation and UI messages.

Closes #48
2026-04-08 10:27:38 +02:00
Pier-Jean Malandrino
fc866ce229 feat: batch large documents with page_range and progress reporting
Use Docling's native page_range parameter to split large PDFs into
sequential batches, preventing memory exhaustion and timeouts.
Progress is reported via existing polling mechanism.

Closes #56
2026-04-07 17:54:40 +02:00
Pier-Jean Malandrino
8ea0cebc16 fix: validate timeout cascade ordering in Settings (#62)
Enforce document_timeout < lock_timeout < conversion_timeout at startup.
Prevents inverted timeout configurations that cause unpredictable behavior.
2026-04-07 17:04:09 +02:00
Pier-Jean Malandrino
1657bce1f0 fix: make converter lock timeout configurable via LOCK_TIMEOUT env var (#61)
Replace hardcoded _LOCK_TIMEOUT=300 with settings.lock_timeout,
readable from LOCK_TIMEOUT environment variable.
2026-04-07 17:01:10 +02:00
Pier-Jean Malandrino
2c254382c8 fix: add __post_init__ validation to Settings dataclass (#65)
Reject invalid configuration at startup: negative timeouts, zero
concurrency, bad table mode. Reports all errors at once.
2026-04-07 16:59:37 +02:00
Pier-Jean Malandrino
f58b563a13 fix: make default table_mode configurable via DEFAULT_TABLE_MODE (H1)
TableFormerMode.ACCURATE is very expensive on CPU (~3-5x slower).
The default can now be set to "fast" on resource-constrained
environments (HF Spaces) via the DEFAULT_TABLE_MODE env var.

User-specified table_mode in the request still takes precedence.

Ref #57 (H1)
2026-04-07 15:32:38 +02:00
Pier-Jean Malandrino
6327b13614 fix: pass max_num_pages and max_file_size to Docling convert (C3)
Defense-in-depth: even if upload validation passes, Docling itself
now enforces page count and file size limits. Configurable via
MAX_PAGE_COUNT and MAX_FILE_SIZE env vars (0 = unlimited).

Ref #57 (C3)
2026-04-07 15:32:38 +02:00
Pier-Jean Malandrino
4c76101142 fix: add document_timeout to PdfPipelineOptions (C1)
Docling's native document_timeout is the only mechanism that can
interrupt processing inside a blocked thread (OCR, table extraction).
Without it, asyncio.wait_for cannot stop a frozen conversion.

Configurable via DOCUMENT_TIMEOUT env var (default: 120s).

Closes #57 (C1)
2026-04-07 15:32:38 +02:00
Pier-Jean Malandrino
09145206d2 fix: limit upload to 5 MB / 20 pages max and increase conversion timeout
Prevents PyTorch/Docling pipeline crashes on HF Spaces CPU by:
- Reducing max file size from 50 MB to 5 MB
- Adding configurable MAX_PAGE_COUNT setting (env var, default unlimited)
- Increasing conversion timeout from 600s to 900s
- Adding frontend upload validation with explicit error messages
- Exposing maxPageCount via /api/health for dynamic UI hints
2026-04-07 10:56:16 +02:00
Pier-Jean Malandrino
ee57b04f84 Add disclaimer banner for shared deployments (HuggingFace)
Feature-flagged via DEPLOYMENT_MODE env var and /api/health endpoint.
Disabled by default (self-hosted), enabled when deploymentMode=huggingface.
2026-04-04 21:06:38 +02:00
Pier-Jean Malandrino
c2e91262c6 Limit concurrent analyses with asyncio.Semaphore
Unbounded asyncio.create_task calls could exhaust CPU and memory on
modest hardware. Add a configurable semaphore (MAX_CONCURRENT_ANALYSES,
default 3) so excess jobs queue instead of running all at once.
2026-04-03 13:51:53 +02:00
Pier-Jean Malandrino
c50106c185 Centralize config through Settings singleton
UPLOAD_DIR and DB_PATH were read directly from os.environ, bypassing
the Settings dataclass. This caused an inconsistency where overriding
Settings had no effect on these values. Now all modules import from
infra.settings.settings.
2026-04-03 13:47:53 +02:00
Pier-Jean Malandrino
1ff8c5108f Add release process, dynamic versioning, and changelog catch-up
Replace hardcoded version strings with build-time injection:
- Frontend: Vite __APP_VERSION__ from env or package.json
- Backend: APP_VERSION env var exposed via /health endpoint
- Docker: build arg propagated through both stages
- CI: release workflow extracts version from git tag

Document branching strategy and release process in CONTRIBUTING.md.
Catch up CHANGELOG with v0.2.0 and Unreleased sections.
Sync package.json version to 0.3.0.
2026-04-02 16:08:37 +02:00
Pier-Jean Malandrino
d42c97160d Format backend codebase with ruff 2026-04-02 12:33:07 +02:00
Pier-Jean Malandrino
3743ed4ca8 Refactor backend to hexagonal architecture for converter extensibility
Extract domain value objects and ports from parsing.py, move Docling-specific
code to infra/local_converter.py, and convert analysis_service to a class
with injected DocumentConverter. This prepares the codebase for plugging in
alternative conversion backends (e.g. Docling Serve) via the Protocol pattern.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-03-31 10:34:07 +02:00